BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0017.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776488.1| chemotaxis CheA protein [Herbaspirillum sero...   168   3e-40
ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium s...   149   9e-35
ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimo...   146   8e-34
ref|ZP_08276039.1| Signal transduction histidine kinase CheA [Ox...   145   3e-33
ref|YP_527633.1| putative CheA signal transduction histidine kin...   103   8e-21

>ref|YP_003776488.1| chemotaxis CheA protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64580.1| chemotaxis CheA protein [Herbaspirillum seropedicae SmR1]
          Length = 638

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/83 (96%), Positives = 82/83 (98%)

Query: 1  MDDEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60
          MDDEMLKDFVVEAL+LAT+VEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV
Sbjct: 1  MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60

Query: 61 SACHLTENLFDALRTGKASVTPL 83
          SACHLTENLFDALRTGKA VTPL
Sbjct: 61 SACHLTENLFDALRTGKAPVTPL 83


>ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille]
 gb|ABR88685.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 615

 Score =  149 bits (377), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 76/81 (93%)

Query: 3  DEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62
          D+MLKDFVVEALDLAT+VEEHLLTLER+P DL  LNAVFR+FHTIKGGAGF+NLPAMVSA
Sbjct: 2  DDMLKDFVVEALDLATNVEEHLLTLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSA 61

Query: 63 CHLTENLFDALRTGKASVTPL 83
          CHLTENLFDALRTG+  VTP+
Sbjct: 62 CHLTENLFDALRTGQVPVTPI 82


>ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans]
 emb|CAL61135.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans]
          Length = 609

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 76/81 (93%)

Query: 3  DEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62
          D+MLKDFVVEAL+LAT+VEEHLL+LER+P DL  LNAVFR+FHTIKGGAGF+NLPAMVSA
Sbjct: 2  DDMLKDFVVEALELATNVEEHLLSLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSA 61

Query: 63 CHLTENLFDALRTGKASVTPL 83
          CHLTENLFDALRTG+  VTP+
Sbjct: 62 CHLTENLFDALRTGQVPVTPI 82


>ref|ZP_08276039.1| Signal transduction histidine kinase CheA [Oxalobacteraceae
          bacterium IMCC9480]
 gb|EGF30489.1| Signal transduction histidine kinase CheA [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 605

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 76/81 (93%)

Query: 3  DEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62
          ++MLKDFV+EAL+LAT+VEEHLLTLER P+D E LNAVFR+FHTIKGGAGF++LPAMVSA
Sbjct: 2  EDMLKDFVIEALELATNVEEHLLTLERRPNDKETLNAVFRSFHTIKGGAGFMSLPAMVSA 61

Query: 63 CHLTENLFDALRTGKASVTPL 83
          CHLTENLFDALRTG A VTPL
Sbjct: 62 CHLTENLFDALRTGAAPVTPL 82


>ref|YP_527633.1| putative CheA signal transduction histidine kinases
          [Saccharophagus degradans 2-40]
 gb|ABD81421.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
          2-40]
          Length = 767

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query: 2  DDEMLKDFVVEALDLATSVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVS 61
          D+E+L+DF+VEA ++   + E L+ LE+ PDD E+LNA+FR FHT+KGGAGF+ L AMV 
Sbjct: 6  DEEILQDFLVEAGEILEQLSEQLVDLEQRPDDKELLNAIFRGFHTVKGGAGFLQLNAMVD 65

Query: 62 ACHLTENLFDALRTGKASVT 81
           CH TENLFD LR GK  V+
Sbjct: 66 CCHATENLFDMLRNGKRVVS 85