BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0099.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seroped... 538 e-151 ref|ZP_08873431.1| diguanylate cyclase [Verminephrobacter sp. At4] 390 e-106 ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacte... 387 e-105 ref|XP_002535949.1| conserved hypothetical protein [Ricinus comm... 386 e-105 ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp... 385 e-105 >ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62961.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/352 (73%), Positives = 300/352 (85%), Gaps = 6/352 (1%) Query: 1 MMKQLLKNLVDITAQRENSRLAGAVITGLYELTKVKQIRVLDIFSLREEMFVQEKMYLNE 60 M K LLK+LV+ITA RE+SRLA +V++ LY+LT VK IR++DIF++R+E +VQEKM + + Sbjct: 1 MKKPLLKHLVEITAHREHSRLAISVVSALYQLTDVKTIRMMDIFTMRDEHYVQEKMVIRD 60 Query: 61 GHLSTIAEHTEDDPKEPLSHYSAIVECIRHHKNEHYEIAADGWHVLWLPVWLHGKVNTCL 120 G L TI EHT DDPKE LS Y A+V CIR+H NE+ E DG HVLWLPVWLHGK+N+CL Sbjct: 61 GTLHTIDEHTADDPKELLSAYPAMVACIRNHLNEYLEATPDGLHVLWLPVWLHGKMNSCL 120 Query: 121 EIRNPHAYDTTALELIDGIFGIYCNYQSLLDYSERDALTGLFNRKTFDEQFSRHAFALAP 180 EIR+ + +++I GIF ++CNYQSLLDYSERDALTGLFNRKTFDEQF+R+AFA+AP Sbjct: 121 EIRSQQPFAPQMMDVIHGIFHVFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAP 180 Query: 181 HEAHSLDNNERRNGG------ETKAHWLAVVDIDHFKQVNDQFGHLYGDEVLILVANILR 234 HEAHS++ +ERR+ E K HWLAVVDIDHFKQVND++GHLYGDEVLILVANILR Sbjct: 181 HEAHSMEQDERRHDSAEAQDDEPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILR 240 Query: 235 TSFRAHDRIFRFGGEEFVILLRSTTLADASKIFDRFRQHVQEYDFPQVGKVTVSLGFVGI 294 SFR+HDRIFRFGGEEFVILLRSTTL+DA KIFDRFRQ+VQEYDFPQVGKVTVSLGFVGI Sbjct: 241 ASFRSHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGI 300 Query: 295 SQETPVVILGHADQALYHAKKNGRNRICYYDELVTSGVLSNEISTNDIVEFF 346 ++ETPVVILGHADQALYHAKK GRNRICYY ELV SGVL + I+TND VEFF Sbjct: 301 ARETPVVILGHADQALYHAKKTGRNRICYYQELVNSGVLRSGIATNDTVEFF 352 >ref|ZP_08873431.1| diguanylate cyclase [Verminephrobacter sp. At4] Length = 347 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/348 (55%), Positives = 246/348 (70%), Gaps = 4/348 (1%) Query: 2 MKQLLKNLVDITAQRENSRLAGAVITGLYELTKVKQIRVLDIFSLREEMFVQEKMYLNEG 61 MK +L+NLV++T R++ RL +V++ L +L+ V ++R L++F+ V+ + ++ +G Sbjct: 1 MKPILRNLVEMTGHRDHLRLEVSVLSTLQQLSGVVEVRALELFTTAGTPHVRPRTWVEQG 60 Query: 62 HL-STIAEHTEDDPKEPLSHYSAIVECIRHHKNEHYEIAADGWHVLWLPVWLHGKVNTCL 120 L ST +E D +E L HY A+ C+ + G H LWLPVW +VNTCL Sbjct: 61 RLVSTDSEAAADPRREALVHYPALRACVANRGTSALAAVRKGGHTLWLPVWTQDQVNTCL 120 Query: 121 EIRNPHAYDTTALELIDGIFGIYCNYQSLLDYSERDALTGLFNRKTFDEQFSRHAFALAP 180 EI + L +I+G+F +Y NYQSLLDYSERDALTGLFNRKTFDEQFSRHA Sbjct: 121 EITQSQPFSAHKLNVIEGVFQVYQNYQSLLDYSERDALTGLFNRKTFDEQFSRHAVPRLS 180 Query: 181 HE--AHSLDNNERRNGGETKAHWLAVVDIDHFKQVNDQFGHLYGDEVLILVANILRTSFR 238 A L +E GE WLAVVDID+FKQVND FGHLYGDEVLIL+ANILR++FR Sbjct: 181 CRTIAQPLAADEEPAAGEPVQQWLAVVDIDNFKQVNDHFGHLYGDEVLILIANILRSAFR 240 Query: 239 AHDRIFRFGGEEFVILLRSTTLADASKIFDRFRQHVQEYDFPQVGKVTVSLGFVGISQET 298 +HDRIFRFGGEEFV+LLRSTTL A K+F+R R VQEY FPQVG+VTVSLGFVG + + Sbjct: 241 SHDRIFRFGGEEFVVLLRSTTLNTAHKVFNRLRTSVQEYPFPQVGRVTVSLGFVGTVKGS 300 Query: 299 PVVILGHADQALYHAKKNGRNRICYYDELVTSGVLSNEISTNDIVEFF 346 PV ILG ADQALYHAKK+GRNR+C+YD+LV SG L+ +++ ND VE F Sbjct: 301 PVEILGQADQALYHAKKHGRNRVCFYDDLVASGELAAKVA-NDDVELF 347 >ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille] gb|ABR91117.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/351 (53%), Positives = 255/351 (72%), Gaps = 7/351 (1%) Query: 1 MMKQLLKNLVDITAQRENSRLAGAVITGLYELTKVKQIRVLDIFSLREEMFVQEKMYLNE 60 MM LL +LV+IT R++ L +V+T L + V + RV+++F R E+FV+ +++++ Sbjct: 1 MMGSLLDHLVEITGHRDHDLLDISVMTALLNMVGVAEARVMELFQSRGELFVRPRVWISG 60 Query: 61 GHLSTIAEH--TEDDPKEPLSHYSAIVECIRHHKNEHYEIAADGWHVLWLPVWLHGKVNT 118 G + T+ E + + EP+ + +V CI KN E +G HVLW+P+W + KV+T Sbjct: 61 GAVQTVDEEYTSSEQAGEPIVSFPGLVACIAQRKNRLEESTENGRHVLWIPIWQNDKVST 120 Query: 119 CLEIRNPHAYDTTALELIDGIFGIYCNYQSLLDYSERDALTGLFNRKTFDEQFSRHAFAL 178 CLEI + + L++++GI +Y NYQSLLDYSERD+LTGL NRKTFDE+F+R A Sbjct: 121 CLEIAHTQPFTPQMLQVMEGILSVYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNA- 179 Query: 179 APHEAHSLDNN---ERRNGGETKAHWLAVVDIDHFKQVNDQFGHLYGDEVLILVANILRT 235 P E+ + D+ ERR+ + K+ WLAV+DIDHFK+VNDQFGHLYGDEVLILVAN+LRT Sbjct: 180 KPSESVARDDEGREERRHHADVKSQWLAVIDIDHFKRVNDQFGHLYGDEVLILVANVLRT 239 Query: 236 SFRAHDRIFRFGGEEFVILLRSTTLADASKIFDRFRQHVQEYDFPQVGKVTVSLGFVGIS 295 SFRA DR+FRFGGEEFV+LLRS TLADA +F+RFR ++++ FPQ+G++TVS+GF IS Sbjct: 240 SFRAQDRVFRFGGEEFVVLLRSATLADAQMVFERFRTSIEQHSFPQIGQITVSIGFASIS 299 Query: 296 QETPVVILGHADQALYHAKKNGRNRICYYDELVTSGVLSNEISTNDIVEFF 346 QETPVVILGHADQALY+AK +GRN++CYYDEL+ G+L + VEFF Sbjct: 300 QETPVVILGHADQALYYAKDHGRNQVCYYDELLDQGLLQVG-KKAESVEFF 349 >ref|XP_002535949.1| conserved hypothetical protein [Ricinus communis] gb|EEF26433.1| conserved hypothetical protein [Ricinus communis] Length = 237 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/237 (77%), Positives = 209/237 (88%), Gaps = 6/237 (2%) Query: 116 VNTCLEIRNPHAYDTTALELIDGIFGIYCNYQSLLDYSERDALTGLFNRKTFDEQFSRHA 175 +N+CLEIR+ + +++I GIF ++CNYQSLLDYSERDALTGLFNRKTFDEQF+R+A Sbjct: 1 MNSCLEIRSQQPFAPQMMDVIHGIFHVFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYA 60 Query: 176 FALAPHEAHSLDNNERRNGG------ETKAHWLAVVDIDHFKQVNDQFGHLYGDEVLILV 229 FA+APHEAHS++ +ERR+ E K HWLAVVDIDHFKQVND++GHLYGDEVLILV Sbjct: 61 FAIAPHEAHSMEQDERRHDSAEAQDDEPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILV 120 Query: 230 ANILRTSFRAHDRIFRFGGEEFVILLRSTTLADASKIFDRFRQHVQEYDFPQVGKVTVSL 289 ANILR SFR+HDRIFRFGGEEFVILLRSTTL+DA KIFDRFRQ+VQEYDFPQVGKVTVSL Sbjct: 121 ANILRASFRSHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSL 180 Query: 290 GFVGISQETPVVILGHADQALYHAKKNGRNRICYYDELVTSGVLSNEISTNDIVEFF 346 GFVGI++ETPVVILGHADQALYHAKK GRNRICYY ELV SGVL + I+TND VEFF Sbjct: 181 GFVGIARETPVVILGHADQALYHAKKTGRNRICYYQELVNSGVLRSGIATNDTVEFF 237 >ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46161.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 347 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/348 (55%), Positives = 247/348 (70%), Gaps = 4/348 (1%) Query: 2 MKQLLKNLVDITAQRENSRLAGAVITGLYELTKVKQIRVLDIFSLREEMFVQEKMYLNEG 61 MK +L NLV++T R++ RL +V++ L++L +K +R L+IF E +V+ + + +G Sbjct: 1 MKPILDNLVEMTGHRDHLRLEVSVLSTLHKLPSIKAVRALEIFQSGSEAYVRPRTWHKDG 60 Query: 62 HLSTIAEHTEDDPK-EPLSHYSAIVECIRHHKNEHYEIAADGWHVLWLPVWLHGKVNTCL 120 + T DP+ EPLS + A+ ECI + + A G H+LWLPVWLH KV+ C+ Sbjct: 61 QMVTSDWEAPVDPRREPLSAFPALHECIAQRRPHVLQSARRGEHMLWLPVWLHDKVHACI 120 Query: 121 EIRNPHAYDTTALELIDGIFGIYCNYQSLLDYSERDALTGLFNRKTFDEQFSRHA--FAL 178 E+ + L++I +F +Y NYQSLLDYSERDALTGLFNRKTFDEQF+R A + Sbjct: 121 EVTQSRPFSAHKLDVIQSVFFVYQNYQSLLDYSERDALTGLFNRKTFDEQFARRAGMSSN 180 Query: 179 APHEAHSLDNNERRNGGETKAHWLAVVDIDHFKQVNDQFGHLYGDEVLILVANILRTSFR 238 A E + ++ + GE HWLAVVDIDHFKQVND+FGHLYGDEVLIL+ANILR SFR Sbjct: 181 AATEVSAEPDDASQPRGEPLQHWLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRNSFR 240 Query: 239 AHDRIFRFGGEEFVILLRSTTLADASKIFDRFRQHVQEYDFPQVGKVTVSLGFVGISQET 298 HDRIFRFGGEEFV+LLRSTTLA A K F+RFR VQEYDFPQVG+VTVSLGF + Sbjct: 241 GHDRIFRFGGEEFVVLLRSTTLATAHKAFNRFRTAVQEYDFPQVGRVTVSLGFASTERGA 300 Query: 299 PVVILGHADQALYHAKKNGRNRICYYDELVTSGVLSNEISTNDIVEFF 346 PV ILG ADQALY+AK++GRNR+CYYD+LV G L +++ ND VE F Sbjct: 301 PVEILGQADQALYYAKEHGRNRVCYYDDLVRDGHLHAKVA-NDNVELF 347