BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0097.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774871.1| D-amino acid dehydrogenase small subunit [He... 759 0.0 ref|YP_004751559.1| D-amino acid dehydrogenase small subunit [Co... 756 0.0 ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [He... 744 0.0 ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [J... 738 0.0 ref|YP_001098713.1| putative D-amino acid dehydrogenase [Hermini... 665 0.0 >ref|YP_003774871.1| D-amino acid dehydrogenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62963.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/424 (84%), Positives = 396/424 (93%), Gaps = 9/424 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKREGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPSA 60 MKVIVLGAGIIGTASAWFLK++G+DVTVIDRQPGAAQETSFANGCQISVSHAEPWANP+A Sbjct: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 61 PLKVLKWLGKEDAPLLYRFRPEWLQWKWAVSFLRECTPARTDANIRQIVALCEYSRQTLV 120 P+KVLKWLGKEDAPLLYRFRPEWLQWKWAV+FLRECT ARTD NIR IVALCEYSRQTL Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 Query: 121 ALRAETGIQYDHLNKGILHFYTEEKEFELSLPAAKLMRDLGCQRDSISADEVIKIEPALA 180 A+RAETGIQYDHL +GILHFYTEEKEF+ SLPAAKLMRDLGC R+SI ADEV++IEPALA Sbjct: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 Query: 181 SIRDKIVGGDFTASDESGDVYKLTTGLAQKAENAGVDFQFNTTITRLLTEGA-------- 232 SIR+KIVGGDFTA+DESGDV+KLTTGLA+K+ AGV+F+++TTITRL+TEGA Sbjct: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 Query: 233 -EXIDGAGRHKVLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTV 291 E I+ GRH+VL+AD FVVAMGSFS+ L++PLGI+LLLYPGKGYSATY++TNPDAAPTV Sbjct: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 Query: 292 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCDAITRRTRELFPDGCDYDNPVY 351 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRC+AITRRTRELFPDGCDY+NP Y Sbjct: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 Query: 352 WTGLRPLTPSNIPYVGKTRFSNLYLNTGHGTLGWTMGCGSGRAIAEIIAGRQPEIDFGFT 411 WTGLRPLTPSN+PYVGKT+F+NLYLNTGHGTLGWTMGCGSGRAIAEI+AG PEIDF FT Sbjct: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 Query: 412 GLPR 415 GLPR Sbjct: 421 GLPR 424 >ref|YP_004751559.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK60736.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 444 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/430 (81%), Positives = 397/430 (92%), Gaps = 9/430 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKREGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPSA 60 MKVIVLGAG+IGT+SAWFL +EGHDVTVI+RQPGAAQETSFANGCQISVSHAEPWANP A Sbjct: 7 MKVIVLGAGVIGTSSAWFLNKEGHDVTVIERQPGAAQETSFANGCQISVSHAEPWANPQA 66 Query: 61 PLKVLKWLGKEDAPLLYRFRPEWLQWKWAVSFLRECTPARTDANIRQIVALCEYSRQTLV 120 PLKVLKWLG+EDAPLLYRFRPEWLQWKWA++FLRECTPART+ NIRQIVA+CEYSRQTL Sbjct: 67 PLKVLKWLGQEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQ 126 Query: 121 ALRAETGIQYDHLNKGILHFYTEEKEFELSLPAAKLMRDLGCQRDSISADEVIKIEPALA 180 A+RAETG+ YD L +GILHFYTE+KEF++SLPAA+LMRDLGC RDSISADEV++IEPALA Sbjct: 127 AVRAETGVDYDCLTRGILHFYTEQKEFDISLPAAQLMRDLGCPRDSISADEVVRIEPALA 186 Query: 181 SIRDKIVGGDFTASDESGDVYKLTTGLAQKAENAGVDFQFNTTITRLLTEGA-------- 232 IRDKIVGGDFTA+DESGDVYK T+GLA KA AGV FQ+NT++TRL+TEG+ Sbjct: 187 RIRDKIVGGDFTATDESGDVYKFTSGLADKAAEAGVKFQYNTSVTRLITEGSGAGAKITG 246 Query: 233 -EXIDGAGRHKVLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTV 291 E I+ GRH+VL ADAFVVAMGSFS PLL+PLGI L++YPGKGYSATY++TNP+AAP+V Sbjct: 247 VEVINADGRHEVLHADAFVVAMGSFSTPLLKPLGIELMIYPGKGYSATYRITNPEAAPSV 306 Query: 292 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCDAITRRTRELFPDGCDYDNPVY 351 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRC+AITRRTRELFPDGCDYD+PVY Sbjct: 307 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYDDPVY 366 Query: 352 WTGLRPLTPSNIPYVGKTRFSNLYLNTGHGTLGWTMGCGSGRAIAEIIAGRQPEIDFGFT 411 WTGLRP+TPSN+PY+GKTR SNL+LNTGHGTLGWTMGCGSGRAIAEII+GR+PE+DF FT Sbjct: 367 WTGLRPMTPSNVPYIGKTRISNLFLNTGHGTLGWTMGCGSGRAIAEIISGRRPEVDFAFT 426 Query: 412 GLPRKAPGKL 421 G+PR+AP L Sbjct: 427 GMPRQAPQPL 436 >ref|YP_001099061.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] emb|CAL60934.1| D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] Length = 443 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/432 (80%), Positives = 394/432 (91%), Gaps = 9/432 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKREGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPSA 60 MKVIVLG+GIIGTASAWFL + GHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANP+A Sbjct: 6 MKVIVLGSGIIGTASAWFLNKAGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 65 Query: 61 PLKVLKWLGKEDAPLLYRFRPEWLQWKWAVSFLRECTPARTDANIRQIVALCEYSRQTLV 120 P+KVLKWLGKEDAPLLYRFRPEWLQWKWA++FLRECTPART+ NIRQIVA+CEYSRQTLV Sbjct: 66 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNENIRQIVAICEYSRQTLV 125 Query: 121 ALRAETGIQYDHLNKGILHFYTEEKEFELSLPAAKLMRDLGCQRDSISADEVIKIEPALA 180 LRAETGI+YD+LN+GILHFYTE+KEF+ SLPAAKLMRDLGC RDSIS DEVI+IEPALA Sbjct: 126 GLRAETGIEYDNLNRGILHFYTEQKEFDDSLPAAKLMRDLGCPRDSISTDEVIRIEPALA 185 Query: 181 SIRDKIVGGDFTASDESGDVYKLTTGLAQKAENAGVDFQFNTTITRLLTEGA-------- 232 IRDKIVGGDFTA+DESGDVYK T+GLA+K+ AGV+FQFNTT+TRL+TEGA Sbjct: 186 RIRDKIVGGDFTANDESGDVYKFTSGLAKKSAEAGVNFQFNTTVTRLITEGAGASAKITG 245 Query: 233 -EXIDGAGRHKVLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTV 291 E I GRH+VL ADAFV+AMGSFS L +PLGI+L++YPGKGYSATY VT+P AAP+V Sbjct: 246 VEIITPEGRHEVLHADAFVLAMGSFSTALAKPLGIDLMIYPGKGYSATYAVTDPSAAPSV 305 Query: 292 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCDAITRRTRELFPDGCDYDNPVY 351 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RC+AITRRTRELFPD CDY+NPVY Sbjct: 306 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYENPVY 365 Query: 352 WTGLRPLTPSNIPYVGKTRFSNLYLNTGHGTLGWTMGCGSGRAIAEIIAGRQPEIDFGFT 411 WTGLRPLTPSN+PY+GKT+FSNL+LNTGHGTLGWTMGCGSGRA+A+I++G QPE++F FT Sbjct: 366 WTGLRPLTPSNVPYIGKTKFSNLFLNTGHGTLGWTMGCGSGRALADIVSGHQPEVNFRFT 425 Query: 412 GLPRKAPGKLST 423 G+P ++ ++ T Sbjct: 426 GMPYRSSDRIIT 437 >ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] gb|ABR90811.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/438 (79%), Positives = 395/438 (90%), Gaps = 12/438 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKREGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPSA 60 MKVIVLG+GIIGT+SAWFL + GH+VTVI+RQPGAAQETSFANGCQISVSHAEPWANP+A Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 61 PLKVLKWLGKEDAPLLYRFRPEWLQWKWAVSFLRECTPARTDANIRQIVALCEYSRQTLV 120 P+KVLKWLGKEDAPLLYRFRPEWLQWKWA++FLRECTPART+ NIRQIVA+CEYSRQTL Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQ 120 Query: 121 ALRAETGIQYDHLNKGILHFYTEEKEFELSLPAAKLMRDLGCQRDSISADEVIKIEPALA 180 A+RAETGI YD L GILHFYT++KEF+ SLPAAKLMRDLGC RDSISADEV++IEPALA Sbjct: 121 AVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPALA 180 Query: 181 SIRDKIVGGDFTASDESGDVYKLTTGLAQKAENAGVDFQFNTTITRLLTEGA-------- 232 SIR+KIVGGDFTA+DESGDVYK T+GLA KA AGVDFQ+NT++TRLLTEG+ Sbjct: 181 SIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGANAKITG 240 Query: 233 -EXIDGAGRHKVLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTV 291 E I GRHKVL ADA+V+AMGSFS L+RPLGI+L++YPGKGYSATYKV +P AAPTV Sbjct: 241 VEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDPAAAPTV 300 Query: 292 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCDAITRRTRELFPDGCDYDNPVY 351 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RC+AITRRTRELFPD CDYDNPVY Sbjct: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYDNPVY 360 Query: 352 WTGLRPLTPSNIPYVGKTRFSNLYLNTGHGTLGWTMGCGSGRAIAEIIAGRQPEIDFGFT 411 WTGLRPLTPSN+PY+GKT++SNLYLNTGHGTLGWTMGCGSGRA+AEI++G QP++DF FT Sbjct: 361 WTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSGLQPDLDFKFT 420 Query: 412 GLPRKAPGKLST---QPA 426 G+P + +L+T QPA Sbjct: 421 GMPYRPSRQLTTGISQPA 438 >ref|YP_001098713.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] emb|CAL60584.1| putative D-amino acid dehydrogenase [Herminiimonas arsenicoxydans] Length = 442 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/435 (71%), Positives = 362/435 (83%), Gaps = 9/435 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKREGHDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPSA 60 MKVIVLG+GIIGTASAWFL + GH+VTVIDRQPGAAQETSFANGCQISVSHA PWAN +A Sbjct: 1 MKVIVLGSGIIGTASAWFLNKAGHEVTVIDRQPGAAQETSFANGCQISVSHATPWANKTA 60 Query: 61 PLKVLKWLGKEDAPLLYRFRPEWLQWKWAVSFLRECTPARTDANIRQIVALCEYSRQTLV 120 P+ +LK LGKEDAPLLYRFR EWLQWKW V+FLREC PART NI QIVA+ EYSRQTL Sbjct: 61 PMTILKSLGKEDAPLLYRFRAEWLQWKWGVNFLRECMPARTVHNIHQIVAIAEYSRQTLQ 120 Query: 121 ALRAETGIQYDHLNKGILHFYTEEKEFELSLPAAKLMRDLGCQRDSISADEVIKIEPALA 180 A+R+E I YD L +GILHFYT +K+F+ SL +A +MRDLGC R ++ADE +K+EPALA Sbjct: 121 AVRSEVDIDYDCLTRGILHFYTSQKDFDESLASAAVMRDLGCPRTPMTADEAVKLEPALA 180 Query: 181 SIRDKIVGGDFTASDESGDVYKLTTGLAQKAENAGVDFQFNTTITRLLTEGA-------- 232 IR +IVG DFT +DESGD+YK TTGLA+KA+ GV FQF+TT+TRL+TEG+ Sbjct: 181 HIRPQIVGADFTETDESGDIYKFTTGLARKAQERGVHFQFSTTVTRLITEGSGAAARVTG 240 Query: 233 -EXIDGAGRHKVLRADAFVVAMGSFSEPLLRPLGINLLLYPGKGYSATYKVTNPDAAPTV 291 E ID GRH+ L ADAFV+A+GSFS PLL+PLGI L++YPGKGYSATY + N + APTV Sbjct: 241 VEVIDAEGRHQTLHADAFVMALGSFSVPLLQPLGIQLMIYPGKGYSATYPLVNAELAPTV 300 Query: 292 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCDAITRRTRELFPDGCDYDNPVY 351 SL DDGYKLV+SRLGD+LRVAGTCE NGYTRELN TRC AITRRTRELFPD CDY+ P Y Sbjct: 301 SLIDDGYKLVLSRLGDKLRVAGTCEFNGYTRELNATRCAAITRRTRELFPDACDYEQPAY 360 Query: 352 WTGLRPLTPSNIPYVGKTRFSNLYLNTGHGTLGWTMGCGSGRAIAEIIAGRQPEIDFGFT 411 W GLRPLTPSN+PY+GKT+FSNL+LNTGHG+LGWTMGCGSGRAIA+II+G QP++DF FT Sbjct: 361 WAGLRPLTPSNVPYIGKTKFSNLFLNTGHGSLGWTMGCGSGRAIADIISGHQPDVDFAFT 420 Query: 412 GLPRKAPGKLSTQPA 426 G+ + K + PA Sbjct: 421 GMAPRKMSKHALMPA 435