BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0088.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_297786.1| amino acid ABC transporter permease [Ralstonia ...   118   2e-25
ref|YP_004685775.1| amino acid ABC transporter permease [Cupriav...   115   3e-24
ref|YP_001861603.1| polar amino acid ABC transporter, inner memb...   115   3e-24
ref|YP_002795610.1| amino acid ABC transporter, permease protein...   114   4e-24
ref|ZP_02482871.1| polar amino acid uptake ABC transporter, PAAT...   114   5e-24

>ref|YP_297786.1| amino acid ABC transporter permease [Ralstonia eutropha JMP134]
 gb|AAZ62942.1| amino acid ABC transporter membrane protein, PAAT family [Ralstonia
           eutropha JMP134]
          Length = 223

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 72/97 (74%)

Query: 12  PVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMR 71
           PVL+ +A  YVS MR TP L+Q F+VY+GL   G+ L     G L LTANAGAYLSE+MR
Sbjct: 52  PVLSGIARAYVSVMRGTPLLVQMFVVYYGLPDLGINLEPTTAGILTLTANAGAYLSESMR 111

Query: 72  GAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           GA+ G+S GQWSA +SLGL+  QT+ +IV PQALRLA
Sbjct: 112 GAILGISRGQWSAAHSLGLSHLQTLRYIVCPQALRLA 148


>ref|YP_004685775.1| amino acid ABC transporter permease [Cupriavidus necator N-1]
 gb|AEI77294.1| amino acid ABC transport system permease protein [Cupriavidus
           necator N-1]
          Length = 219

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 70/97 (72%)

Query: 12  PVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMR 71
           P+L  +A  YVS MR TP L+Q F+VY+GL   G+ L     G L LTANAGAYLSE+MR
Sbjct: 48  PILGGIARTYVSVMRGTPLLVQMFVVYYGLPDLGISLDPTSAGILTLTANAGAYLSESMR 107

Query: 72  GAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           GA+ G+  GQWSA +SLGL+  QT+ +IV PQALRLA
Sbjct: 108 GAILGIGRGQWSAAHSLGLSHLQTLRYIVCPQALRLA 144


>ref|YP_001861603.1| polar amino acid ABC transporter, inner membrane subunit
           [Burkholderia phymatum STM815]
 gb|ACC74557.1| polar amino acid ABC transporter, inner membrane subunit
           [Burkholderia phymatum STM815]
          Length = 219

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 71/97 (73%)

Query: 12  PVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMR 71
           P++A +A  YVS MR TP L+Q F+VY+GL   G+ L     G L LTANAGAYLSE+MR
Sbjct: 48  PIIAGIARAYVSLMRGTPLLVQIFVVYYGLPDLGISLDPTSAGILALTANAGAYLSESMR 107

Query: 72  GAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           GA+ G+S GQW A +SLGLT  QT+ +++ PQALR+A
Sbjct: 108 GAILGISQGQWGAAHSLGLTHMQTLRYVICPQALRMA 144


>ref|YP_002795610.1| amino acid ABC transporter, permease protein [Laribacter
           hongkongensis HLHK9]
 gb|ACO74601.1| probable amino acid ABC transporter, permease protein [Laribacter
           hongkongensis HLHK9]
          Length = 219

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 74/106 (69%)

Query: 3   VTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANA 62
           +  +R  R+PVLA +A +YVS MR TP L+Q F++Y+GL   G+E   +  G L LT NA
Sbjct: 39  IALVRLTRLPVLAPLAALYVSAMRGTPLLVQIFVIYYGLPGIGIEFDPVTAGILALTMNA 98

Query: 63  GAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
            AYLSE+MRGA+ GVS GQW A  SLG + +Q++  I+ PQALRLA
Sbjct: 99  AAYLSESMRGAIAGVSTGQWQAASSLGFSWWQSMRFIIAPQALRLA 144


>ref|ZP_02482871.1| polar amino acid uptake ABC transporter, PAAT family, permease
           protein [Burkholderia pseudomallei 7894]
 ref|ZP_02507184.1| polar amino acid uptake ABC transporter, PAAT family, permease
           protein [Burkholderia pseudomallei BCC215]
 ref|ZP_04902538.1| polar amino acid uptake ABC transporter, PAAT family, permease
           protein [Burkholderia pseudomallei S13]
 gb|EDS85550.1| polar amino acid uptake ABC transporter, PAAT family, permease
           protein [Burkholderia pseudomallei S13]
          Length = 219

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 75/108 (69%)

Query: 1   MLVTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTA 60
           +LV  +R     +L+A+A  YVS MR TP L+Q F+VY+GL   G+ L     G L LT 
Sbjct: 37  LLVALVRIGSNRLLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDIGISLDPTAAGILTLTL 96

Query: 61  NAGAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           NAGAYLSE+MRGA+ G+  GQW+A +SLGLT  QT+ H++ PQALRLA
Sbjct: 97  NAGAYLSESMRGAILGIGRGQWAASHSLGLTHVQTLRHVICPQALRLA 144