BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0078.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirill... 535 e-150 ref|YP_004417115.1| sugar ABC transporter permease [Pusillimonas... 510 e-143 ref|YP_548109.1| binding-protein-dependent transport systems inn... 486 e-135 ref|YP_004157654.1| binding-protein-dependent transport systems ... 479 e-133 ref|ZP_08873189.1| sugar ABC transporter permease [Verminephroba... 447 e-124 >ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] emb|CAP19670.1| permease component protein [Herbaspirillum seropedicae] gb|ADJ64821.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 277/291 (95%), Positives = 285/291 (97%) Query: 4 KSKDLQQETQGMDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGN 63 K KD QQETQGMDFLQS PR+W+T YIPL IF+FVLLFPFYWMVITAFKPDNELL Q+GN Sbjct: 3 KKKDDQQETQGMDFLQSTPRKWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQSGN 62 Query: 64 PFWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQ 123 PFWV+APTLAHFKKLLF+TQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQ Sbjct: 63 PFWVIAPTLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQ 122 Query: 124 VGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIP 183 VGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIP Sbjct: 123 VGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIP 182 Query: 184 YELEECALIDGATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTV 243 YELEECALIDGATRWEIL+KIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTV Sbjct: 183 YELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTV 242 Query: 244 PVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 PVGIVTELV+GDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE Sbjct: 243 PVGIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 >ref|YP_004417115.1| sugar ABC transporter permease [Pusillimonas sp. T7-7] gb|AEC20491.1| sugar ABC transporter permease [Pusillimonas sp. T7-7] Length = 301 Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/293 (83%), Positives = 269/293 (91%) Query: 2 SKKSKDLQQETQGMDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQT 61 + K +QET GMD+LQ++PRRW+T YIPLGI VF+LLFPFYWM +TA KP++E+L + Sbjct: 9 KRADKSEKQETHGMDYLQTLPRRWVTIYIPLGILVFILLFPFYWMAMTAIKPNSEMLLSS 68 Query: 62 GNPFWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGS 121 GNPFWV+APTL HFK LLF T + WL+NTVI+SVV+TF SLAASVF AYAIERLRFQGS Sbjct: 69 GNPFWVIAPTLQHFKDLLFNTPFTEWLINTVIISVVATFLSLAASVFGAYAIERLRFQGS 128 Query: 122 KQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS 181 KQVG IF AYL+PPSILFIPLA+IVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS Sbjct: 129 KQVGFAIFFAYLVPPSILFIPLASIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRS 188 Query: 182 IPYELEECALIDGATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK 241 IPYELEECALIDGATRW+ILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTF+SSSEVK Sbjct: 189 IPYELEECALIDGATRWQILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFVSSSEVK 248 Query: 242 TVPVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 TVPVG+VTELV+GDVYHWG LMAGALLGS+PVA+VYSFFVEYYVSGMTGAVKE Sbjct: 249 TVPVGVVTELVEGDVYHWGQLMAGALLGSVPVAIVYSFFVEYYVSGMTGAVKE 301 >ref|YP_548109.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE43211.1| carbohydrate ABC transporter membrane protein 2, CUT1 family [Polaromonas sp. JS666] Length = 291 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 234/290 (80%), Positives = 264/290 (91%) Query: 5 SKDLQQETQGMDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGNP 64 S+D +T GM FL S PR+ Y+PL IF+FVLLFPFYWM ITAFKP+NELL + GNP Sbjct: 2 SQDKSTDTVGMSFLDSTPRKLFRVYLPLCIFLFVLLFPFYWMGITAFKPNNELLSRDGNP 61 Query: 65 FWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQV 124 FW++APTLAH KKLLF+T YP W+ NTV+VSVVSTF SLAASV AAYAIERLRF G+K V Sbjct: 62 FWIIAPTLAHVKKLLFDTAYPQWMWNTVLVSVVSTFFSLAASVLAAYAIERLRFSGAKHV 121 Query: 125 GLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPY 184 GLGIFLAYL+PPSILFIPLA++VF+LGLFDTR ALILTYPTFLIPFCTWLLMGYFR+IP+ Sbjct: 122 GLGIFLAYLVPPSILFIPLASVVFQLGLFDTRLALILTYPTFLIPFCTWLLMGYFRTIPF 181 Query: 185 ELEECALIDGATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVP 244 ELEECALIDGATRW+IL+KI+LPLAVPGLISAGIFAFTLSWNEFIYALTF+SSSE+KT+P Sbjct: 182 ELEECALIDGATRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFVSSSEIKTLP 241 Query: 245 VGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 VG+VTELV+GDVYHWG+LMAGAL GSLPVA +YSFFVEYYVSGMTG+VKE Sbjct: 242 VGVVTELVEGDVYHWGSLMAGALFGSLPVAFIYSFFVEYYVSGMTGSVKE 291 >ref|YP_004157654.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU39543.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 291 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 233/290 (80%), Positives = 259/290 (89%) Query: 5 SKDLQQETQGMDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGNP 64 S Q +T GM +L ++PR+ +T Y+PL +F+ VLLFPFYWM IT+ KPD ELL + GNP Sbjct: 2 SNAGQVDTVGMSYLDTIPRKAVTVYLPLVVFLIVLLFPFYWMAITSVKPDAELLSREGNP 61 Query: 65 FWVVAPTLAHFKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQV 124 FWV+ PTL+HF KLLFET YP WL NTV+VSVVSTF SLAASVFAAYAIERLRF+GSK V Sbjct: 62 FWVINPTLSHFYKLLFETSYPQWLWNTVLVSVVSTFVSLAASVFAAYAIERLRFKGSKHV 121 Query: 125 GLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPY 184 GL IFLAY++PPSILFIPLA +VF LGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIP Sbjct: 122 GLSIFLAYMVPPSILFIPLANVVFNLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPA 181 Query: 185 ELEECALIDGATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVP 244 ELEECALIDGA+RW+IL+KI+LPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKT+P Sbjct: 182 ELEECALIDGASRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTLP 241 Query: 245 VGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 VG+VTELV GDVY WG LMAGALLGSLPVA +YSFFVEYYVSGMTG+VKE Sbjct: 242 VGVVTELVQGDVYQWGPLMAGALLGSLPVAFIYSFFVEYYVSGMTGSVKE 291 >ref|ZP_08873189.1| sugar ABC transporter permease [Verminephrobacter sp. At4] Length = 280 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/280 (81%), Positives = 251/280 (89%) Query: 15 MDFLQSVPRRWITTYIPLGIFVFVLLFPFYWMVITAFKPDNELLRQTGNPFWVVAPTLAH 74 MDFL+S+PRRW+T YIP+ FV VLLFPFYWM +T+ KP+NELL + NPFW+V PTLAH Sbjct: 1 MDFLRSMPRRWVTVYIPVLCFVLVLLFPFYWMAVTSLKPNNELLSRESNPFWIVGPTLAH 60 Query: 75 FKKLLFETQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLI 134 F+KLLF T YPAWL NTV+VSVVST SL SV AAYAIERLRFQG+K G IFLAYL+ Sbjct: 61 FQKLLFHTGYPAWLWNTVVVSVVSTGISLVLSVLAAYAIERLRFQGAKPAGGAIFLAYLV 120 Query: 135 PPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDG 194 PPSILFIPLAAIV KLGLFD+R ALILTYPTFLIPF TWLLMGYFRSIPYELEECALIDG Sbjct: 121 PPSILFIPLAAIVVKLGLFDSRMALILTYPTFLIPFGTWLLMGYFRSIPYELEECALIDG 180 Query: 195 ATRWEILIKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTELVDG 254 A+RW+IL+KI+LPLAVPGLISAGIFAFTLSWNEFIYALTFISSSE KTVPVG+VTELV+G Sbjct: 181 ASRWQILVKIVLPLAVPGLISAGIFAFTLSWNEFIYALTFISSSESKTVPVGVVTELVEG 240 Query: 255 DVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 294 DVYHWG LMAGALLGSLPVA YSFFVE+YVSG+TGA+KE Sbjct: 241 DVYHWGPLMAGALLGSLPVAFAYSFFVEHYVSGLTGAIKE 280