BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0071.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_999257.1| hypothetical protein Veis_4541 [Verminephrobact... 562 e-158 ref|YP_003776722.1| hypothetical protein Hsero_3333 [Herbaspiril... 544 e-153 ref|YP_001771064.1| hypothetical protein M446_4284 [Methylobacte... 425 e-117 ref|YP_549823.1| twin-arginine translocation pathway signal prot... 416 e-114 ref|YP_002944122.1| hypothetical protein Vapar_2221 [Variovorax ... 409 e-112 >ref|YP_999257.1| hypothetical protein Veis_4541 [Verminephrobacter eiseniae EF01-2] gb|ABM60239.1| Uncharacterized protein UPF0065 [Verminephrobacter eiseniae EF01-2] Length = 330 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/326 (87%), Positives = 301/326 (92%), Gaps = 3/326 (0%) Query: 1 MIGIRRNLLKTVIAAAAVLS---FGAAHAAWPDRPVTLVVPWGAGGGTDATARIIGALLE 57 MI +RR + + V+ AAA LS FGAAHAAWPDRPVTLVVPW AGGGTDATARIIGALLE Sbjct: 1 MIEMRRKIFRAVVTAAAALSALSFGAAHAAWPDRPVTLVVPWAAGGGTDATARIIGALLE 60 Query: 58 KELGQPVNVVNRTGGNGVVGHQAIAGAAPDGYTIGLATVEIAMMHHQGLTQLSYKNYTPI 117 KELGQPVNVVNRTGGNGVVGHQAIAGA PDGYTIG+ATVEIAMMHHQGLTQLSY++YTPI Sbjct: 61 KELGQPVNVVNRTGGNGVVGHQAIAGATPDGYTIGMATVEIAMMHHQGLTQLSYRDYTPI 120 Query: 118 ALMNFDPAALTVSAESPYKTFDDLLKAVKANPGKLKASGTGQGGIWHLGLAGMLSDLKLE 177 AL+NFDPAALTVSAESPYKTFDDLLKAVKA PGKLKASGTG GGIWHL LAGMLSDLKL+ Sbjct: 121 ALLNFDPAALTVSAESPYKTFDDLLKAVKAAPGKLKASGTGHGGIWHLSLAGMLSDLKLD 180 Query: 178 PTAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKARPLVIMANAPAALYPKV 237 AVR+VPSNGAAPA+VDLAAGGVDIVAASLPEAR LIDAGKARP+VIMANAPAALYP V Sbjct: 181 TVAVRWVPSNGAAPALVDLAAGGVDIVAASLPEARPLIDAGKARPMVIMANAPAALYPNV 240 Query: 238 PTLKSLTGSNWTIGAWRGIVAPRNLPADIQTRLAGHLQKIYNSKEYKDFMGGRGFGTMYA 297 PTLKSLTGSNWT+G WRGI AP+ LPADIQ +LA H+QKI NSKEYKDFMGGRGFG MYA Sbjct: 241 PTLKSLTGSNWTMGGWRGIAAPKGLPADIQAKLARHIQKICNSKEYKDFMGGRGFGMMYA 300 Query: 298 DSAEFGKFMEKSDSDMGQILKTLGMA 323 DSAEFGKFMEKSD+DMGQILKTLGMA Sbjct: 301 DSAEFGKFMEKSDTDMGQILKTLGMA 326 >ref|YP_003776722.1| hypothetical protein Hsero_3333 [Herbaspirillum seropedicae SmR1] gb|ADJ64814.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 266/323 (82%), Positives = 297/323 (91%), Gaps = 3/323 (0%) Query: 5 RRNLLKTVIA---AAAVLSFGAAHAAWPDRPVTLVVPWGAGGGTDATARIIGALLEKELG 61 RR +LK+++A A +VL+ A AAWP+RPVTLVVPWGAGGGTDATARIIGALLEK+LG Sbjct: 17 RRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLVVPWGAGGGTDATARIIGALLEKDLG 76 Query: 62 QPVNVVNRTGGNGVVGHQAIAGAAPDGYTIGLATVEIAMMHHQGLTQLSYKNYTPIALMN 121 QPVNVVNRTGGNG VGHQAIA AAPDGYTIG+ATVEI+MMHHQGLT+L+ +++TP+ALMN Sbjct: 77 QPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMMHHQGLTKLTPRDFTPLALMN 136 Query: 122 FDPAALTVSAESPYKTFDDLLKAVKANPGKLKASGTGQGGIWHLGLAGMLSDLKLEPTAV 181 FDPAALTVS +SPYK+FDDLLKA+KANPGKLKASGTGQGGIWHLGLAGML+DLK+ P AV Sbjct: 137 FDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGGIWHLGLAGMLNDLKVAPNAV 196 Query: 182 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKARPLVIMANAPAALYPKVPTLK 241 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKA PLV+MAN PAALYPKVPTLK Sbjct: 197 RFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAVPLVVMANEPAALYPKVPTLK 256 Query: 242 SLTGSNWTIGAWRGIVAPRNLPADIQTRLAGHLQKIYNSKEYKDFMGGRGFGTMYADSAE 301 SLTGS WT GAWRGIVAP+ LPA++QTRL+ L+KIY SK+YKDFM GRGFG MYADSAE Sbjct: 257 SLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESKDYKDFMSGRGFGVMYADSAE 316 Query: 302 FGKFMEKSDSDMGQILKTLGMAK 324 FGKFM+KSD+DMG ILKTLGMA+ Sbjct: 317 FGKFMDKSDADMGAILKTLGMAR 339 >ref|YP_001771064.1| hypothetical protein M446_4284 [Methylobacterium sp. 4-46] gb|ACA18630.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 335 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/330 (63%), Positives = 258/330 (78%), Gaps = 6/330 (1%) Query: 1 MIGIRRNLL-----KTVIAAAAVLSFGAAHAA-WPDRPVTLVVPWGAGGGTDATARIIGA 54 M+ +RR +L +++AA L +AHAA WP+RP+TL+VPW AGGGTDATARIIG+ Sbjct: 6 MMVLRRRVLGILSATSLLAALPFLGVSSAHAAGWPERPITLLVPWAAGGGTDATARIIGS 65 Query: 55 LLEKELGQPVNVVNRTGGNGVVGHQAIAGAAPDGYTIGLATVEIAMMHHQGLTQLSYKNY 114 L+EKELGQPVNVVNRTGGNGVVGH AIA + PDGYTIGLATVEIAM+H QGLT L+ K++ Sbjct: 66 LIEKELGQPVNVVNRTGGNGVVGHTAIAKSQPDGYTIGLATVEIAMLHWQGLTALTAKDF 125 Query: 115 TPIALMNFDPAALTVSAESPYKTFDDLLKAVKANPGKLKASGTGQGGIWHLGLAGMLSDL 174 TP+ALMN DPA + V ++PYKT DL+ +KANPGK KASGTGQGGIWHL +AGML L Sbjct: 126 TPLALMNLDPAGVQVREDAPYKTVKDLIDDIKANPGKHKASGTGQGGIWHLAIAGMLDSL 185 Query: 175 KLEPTAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKARPLVIMANAPAALY 234 +P +V +VPSNGAAP + DL AGGV IV S+PEARSLI+AG+ + L IM P ++ Sbjct: 186 GADPASVPWVPSNGAAPGLQDLVAGGVTIVPCSIPEARSLIEAGRVKSLAIMDETPNPIF 245 Query: 235 PKVPTLKSLTGSNWTIGAWRGIVAPRNLPADIQTRLAGHLQKIYNSKEYKDFMGGRGFGT 294 PKVPTL++ TGS+WTIGAWRG+VAP+ LP DI +L L K+YNSK+YKDFMGGRGFG Sbjct: 246 PKVPTLRAETGSSWTIGAWRGVVAPKGLPEDIAKKLIAVLDKVYNSKDYKDFMGGRGFGI 305 Query: 295 MYADSAEFGKFMEKSDSDMGQILKTLGMAK 324 +A +F F EKSD+D+G ++K +G+AK Sbjct: 306 RHAAGPDFLSFWEKSDADLGAVMKKVGIAK 335 >ref|YP_549823.1| twin-arginine translocation pathway signal protein [Polaromonas sp. JS666] gb|ABE44925.1| Twin-arginine translocation pathway signal [Polaromonas sp. JS666] Length = 330 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/325 (63%), Positives = 253/325 (77%), Gaps = 5/325 (1%) Query: 5 RRNLLKTVIAAAAVLSFGAAHAA-----WPDRPVTLVVPWGAGGGTDATARIIGALLEKE 59 RR+ + A A L+ AA +P RPVTL+VPWGAGGGTDATARI+G+LLEKE Sbjct: 6 RRSFVARAAGAIACLTLVAAALPVAAQGYPTRPVTLIVPWGAGGGTDATARIVGSLLEKE 65 Query: 60 LGQPVNVVNRTGGNGVVGHQAIAGAAPDGYTIGLATVEIAMMHHQGLTQLSYKNYTPIAL 119 +GQPV VVNRTGG+GVVGH AIA A PDGYTIGLATVEI MMH QGLT+L+ +YTPI L Sbjct: 66 IGQPVTVVNRTGGSGVVGHSAIASAPPDGYTIGLATVEIGMMHWQGLTELTGASYTPIGL 125 Query: 120 MNFDPAALTVSAESPYKTFDDLLKAVKANPGKLKASGTGQGGIWHLGLAGMLSDLKLEPT 179 +N DPA + V A++PYKT ++LL A+KANPGKLKASGTGQGGIWHL +AG+L D K++P Sbjct: 126 VNADPAGIQVRADAPYKTVNELLAAIKANPGKLKASGTGQGGIWHLAIAGLLRDQKIDPA 185 Query: 180 AVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKARPLVIMANAPAALYPKVPT 239 +V +VPSNGAAP + D+ AGGVDI SLPEARSLIDAGK + L IM + PAALYP V T Sbjct: 186 SVPWVPSNGAAPGLQDMIAGGVDIAPVSLPEARSLIDAGKVKSLAIMNDKPAALYPNVAT 245 Query: 240 LKSLTGSNWTIGAWRGIVAPRNLPADIQTRLAGHLQKIYNSKEYKDFMGGRGFGTMYADS 299 LK+ GS+WT+ AWRGIVAP+ +PA+++ +L+ ++KI SKEY DFM RGFG +YA Sbjct: 246 LKAAIGSDWTMAAWRGIVAPKGIPAEVRDKLSAAIKKIAASKEYNDFMSSRGFGVVYAGP 305 Query: 300 AEFGKFMEKSDSDMGQILKTLGMAK 324 EFGKFM KSD+++G +K +G+AK Sbjct: 306 DEFGKFMAKSDAELGATMKAVGIAK 330 >ref|YP_002944122.1| hypothetical protein Vapar_2221 [Variovorax paradoxus S110] gb|ACS18856.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 335 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/297 (65%), Positives = 238/297 (80%) Query: 28 WPDRPVTLVVPWGAGGGTDATARIIGALLEKELGQPVNVVNRTGGNGVVGHQAIAGAAPD 87 +P RPVTL+VPWGAGGGTDATARII +LLEKELGQP+ VVNRTGGNGVVGH AIA A PD Sbjct: 39 YPSRPVTLIVPWGAGGGTDATARIIASLLEKELGQPMTVVNRTGGNGVVGHAAIAAAPPD 98 Query: 88 GYTIGLATVEIAMMHHQGLTQLSYKNYTPIALMNFDPAALTVSAESPYKTFDDLLKAVKA 147 GYTIG+ATVEI MMH QGLT L+ +YTPI L N DPA + V A++PYK +LL A+KA Sbjct: 99 GYTIGMATVEIGMMHWQGLTPLTSASYTPIGLANLDPAGIQVRADAPYKNVAELLAAIKA 158 Query: 148 NPGKLKASGTGQGGIWHLGLAGMLSDLKLEPTAVRFVPSNGAAPAMVDLAAGGVDIVAAS 207 +PGKLKASGTGQGGIWHL +AG+L D K++P AV +VPSNGAAP + D+ AGGVDI S Sbjct: 159 SPGKLKASGTGQGGIWHLAIAGLLRDQKIDPAAVPWVPSNGAAPGLQDVVAGGVDIAPVS 218 Query: 208 LPEARSLIDAGKARPLVIMANAPAALYPKVPTLKSLTGSNWTIGAWRGIVAPRNLPADIQ 267 LPEARSLIDAGK + L IM++ P+ALYP VPTLK+ GS+W++ AWRGIVAP+ LPAD++ Sbjct: 219 LPEARSLIDAGKVKSLAIMSDKPSALYPNVPTLKAAIGSDWSMAAWRGIVAPKGLPADVR 278 Query: 268 TRLAGHLQKIYNSKEYKDFMGGRGFGTMYADSAEFGKFMEKSDSDMGQILKTLGMAK 324 +LAG L+K+ SKEY DFM RGFG +YA +F +M KSD+++G +K +G+ K Sbjct: 279 DKLAGALKKVVASKEYTDFMASRGFGVIYAGPDDFAAYMAKSDAELGAAMKAVGIVK 335