BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0066.p         (203 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776718.1| GntR family transcription regulator protein ...   207   7e-52
ref|YP_004618006.1| GntR family transcriptional regulator [Ramli...   114   7e-24
ref|YP_004153139.1| GntR family transcriptional regulator [Vario...   108   5e-22
emb|CBA29567.1| hypothetical protein Csp_A12800 [Curvibacter put...   107   9e-22
ref|ZP_06689913.1| transcriptional regulatory protein [Achromoba...   106   2e-21

>ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64810.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 256

 Score =  207 bits (527), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 111/130 (85%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           M+EGEVAYAAA++G K QI A+EEA+  MI N  AG +PLEADRLFHIR+AEATGNSVLV
Sbjct: 101 MIEGEVAYAAAQHGSKQQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLV 160

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
           GLVTQLFDARLGPLF RLHSHFD   VW +AI+EH+ VM+ALR R+PE AR AMRRHMDI
Sbjct: 161 GLVTQLFDARLGPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDI 220

Query: 121 AFKRYSASLV 130
           AF RYSA+L+
Sbjct: 221 AFTRYSANLI 230


>ref|YP_004618006.1| GntR family transcriptional regulator [Ramlibacter tataouinensis
           TTB310]
 gb|AEG91987.1| transcriptional regulator, GntR family-like protein [Ramlibacter
           tataouinensis TTB310]
          Length = 249

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 81/129 (62%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           ++EGEVA  AA++ K+AQ+ A+  A  +M E   AG  P E D  FH  VA A GN VL 
Sbjct: 102 LVEGEVAALAARHAKRAQVAAMAGALARMQEQADAGIVPREGDEAFHAAVAGACGNEVLR 161

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
             V   + AR GPLF+RL  +F+    W+ A+ EH++V++A+R RDP+ AR+AM  H+  
Sbjct: 162 DTVMGYWQARSGPLFERLGDYFENPASWSAALVEHAQVLEAIRGRDPQAAREAMHLHLQR 221

Query: 121 AFKRYSASL 129
           A KRY AS 
Sbjct: 222 ACKRYGASW 230


>ref|YP_004153139.1| GntR family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU35028.1| GntR domain protein [Variovorax paradoxus EPS]
          Length = 235

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 77/129 (59%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           ++EGE A  AA  GK+  +DA+  A + M E       PLE DR FH+ +  A+GN+VLV
Sbjct: 101 VIEGETAAIAAAAGKRKDVDAMSRAIELMREMADRNVMPLEGDRAFHLAIVNASGNTVLV 160

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
             V   +D+R GP+F RL  +F+ +  W  AI EH  +  A+ ARD E AR AM  HMD 
Sbjct: 161 ETVQNFWDSRKGPIFTRLGGYFENVPSWRSAIVEHEAIRDAVAARDAEGARAAMHAHMDK 220

Query: 121 AFKRYSASL 129
           + +R+SAS 
Sbjct: 221 SHQRFSASW 229


>emb|CBA29567.1| hypothetical protein Csp_A12800 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 273

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 79/127 (62%)

Query: 1   MLEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLV 60
           ++E E+A  AAK+     +  + E  + M  + +A   P+  DR FHIR+A+A+ NS L 
Sbjct: 139 LIECELAALAAKSTDPTLVPDLLETLRDMEADIAARTLPIRGDRAFHIRIAQASDNSALQ 198

Query: 61  GLVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDI 120
            +VTQLFD R GPLF +L  HF+    W  A++EH  V+ A+ A DP+MAR AM  H+D 
Sbjct: 199 AVVTQLFDERNGPLFQKLGGHFEREATWKAAVDEHRAVVDAIAAHDPDMARAAMSGHLDH 258

Query: 121 AFKRYSA 127
           + +R+SA
Sbjct: 259 SHERFSA 265


>ref|ZP_06689913.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gb|EFF73159.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 194

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 78/132 (59%)

Query: 2   LEGEVAYAAAKNGKKAQIDAIEEAFQQMIENTSAGANPLEADRLFHIRVAEATGNSVLVG 61
           +EGE+A  AA+N   A +D + EA   M +   AG  P+  DRLFH+RVAE   N+VLV 
Sbjct: 50  IEGELAAQAARNPAPALVDGLLEAVGAMEDEAGAGFVPIRGDRLFHLRVAEMANNAVLVR 109

Query: 62  LVTQLFDARLGPLFDRLHSHFDTIEVWNDAIEEHSRVMKALRARDPEMARQAMRRHMDIA 121
           +V +LFD R  PL  +L  +F+  + W  AI EH RV+ A+ A D   AR AM  H+  +
Sbjct: 110 VVGELFDERHNPLSVKLGDYFENPDSWAVAITEHRRVITAIAAGDEGAARAAMHHHLSCS 169

Query: 122 FKRYSASLVGQA 133
           F R +AS  G A
Sbjct: 170 FDRLTASWPGAA 181