BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0065.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353304.1| LuxR family DNA-binding response regulator [... 231 1e-58 ref|YP_003750303.1| two component response regulator transcripti... 229 4e-58 ref|ZP_00946815.1| Transcriptional regulatory protein [Ralstonia... 224 1e-56 ref|YP_003744224.1| two component response regulator transcripti... 224 2e-56 gb|AEG67607.1| response regulator protein [Ralstonia solanacearu... 223 3e-56 >ref|YP_001353304.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gb|ABR89991.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 231 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 128/151 (84%), Gaps = 2/151 (1%) Query: 127 IHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPDGS 186 IHV IVEDDP FR ALSK ++ PDM L+ AGTRAEGLA+LQG PADVLLVDLGLPDGS Sbjct: 13 IHVVIVEDDPGFRAALSKVVQDAPDMHLSGSAGTRAEGLALLQGAPADVLLVDLGLPDGS 72 Query: 187 GIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLASG 246 GIDVI AA+L WP C+IMVSTNFGDETHVMRSIE+GAAGYLLKDSSP +++DEIRS+ASG Sbjct: 73 GIDVIKAAVLLWPSCSIMVSTNFGDETHVMRSIESGAAGYLLKDSSPTRMIDEIRSIASG 132 Query: 247 GSPISPIIARQVLARH--GAPGTPDRQIXAD 275 GSPISPIIARQ+LAR AP T + Q A+ Sbjct: 133 GSPISPIIARQILARFRTSAPVTTEEQAPAE 163 >ref|YP_003750303.1| two component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] emb|CBJ35679.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] Length = 230 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 115/146 (78%), Positives = 127/146 (86%), Gaps = 3/146 (2%) Query: 125 PSIHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPD 184 PSIHVAIVEDD F DAL++ALE+ PDMRL +AG+RAEGLA+L G PADVLLVDLGLPD Sbjct: 11 PSIHVAIVEDDSGFLDALTQALESAPDMRLTGVAGSRAEGLALLDGAPADVLLVDLGLPD 70 Query: 185 GSGIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLA 244 GSGIDVI AA +W C+IMVSTNFGDETHVMRSIEAGAAGYLLKDSS A+I++EIRSLA Sbjct: 71 GSGIDVIEAAARQWSACSIMVSTNFGDETHVMRSIEAGAAGYLLKDSSAARILNEIRSLA 130 Query: 245 SGGSPISPIIARQVLARH---GAPGT 267 SGGSPISPIIARQ+LAR GA GT Sbjct: 131 SGGSPISPIIARQILARFRQGGARGT 156 >ref|ZP_00946815.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] ref|YP_002261098.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gb|EAP70692.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] emb|CAQ63040.1| two component response regulator protein [Ralstonia solanacearum IPO1609] Length = 232 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 126/149 (84%), Gaps = 3/149 (2%) Query: 125 PSIHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPD 184 P+IHVAIVEDDP F DAL++AL +PDMRL +AG+RAEGL +L G PADVLLVDLGLPD Sbjct: 11 PAIHVAIVEDDPGFLDALTQALACSPDMRLIGVAGSRAEGLRLLDGTPADVLLVDLGLPD 70 Query: 185 GSGIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLA 244 GSGIDVI AA +W C+IMVST+FGDETHVMRSIEAGAAGYLLKDSS A+I+DEIRSLA Sbjct: 71 GSGIDVIEAAARKWSACSIMVSTHFGDETHVMRSIEAGAAGYLLKDSSAARILDEIRSLA 130 Query: 245 SGGSPISPIIARQVLARH---GAPGTPDR 270 SGGSPISPIIARQ+LAR GA G D Sbjct: 131 SGGSPISPIIARQILARFRQGGARGAADE 159 >ref|YP_003744224.1| two component response regulator transcriptional regulator protein [Ralstonia solanacearum CFBP2957] emb|CBJ41577.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 232 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 126/149 (84%), Gaps = 3/149 (2%) Query: 125 PSIHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPD 184 P+IHVAIVEDDP F DAL++AL +PDMRL +AG+RAEGL +L G PADVLLVDLGLPD Sbjct: 11 PAIHVAIVEDDPGFLDALTQALACSPDMRLIGVAGSRAEGLRLLDGTPADVLLVDLGLPD 70 Query: 185 GSGIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLA 244 GSGIDVI AA +W C+IMVST+FGDETHVMRSIEAGAAGYLLKDSS A+I+DEIRSLA Sbjct: 71 GSGIDVIEAAARKWSACSIMVSTHFGDETHVMRSIEAGAAGYLLKDSSAARILDEIRSLA 130 Query: 245 SGGSPISPIIARQVLARH---GAPGTPDR 270 SGGSPISPIIARQ+LAR GA G D Sbjct: 131 SGGSPISPIIARQILARFRQGGARGAADE 159 >gb|AEG67607.1| response regulator protein [Ralstonia solanacearum Po82] Length = 232 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 126/149 (84%), Gaps = 3/149 (2%) Query: 125 PSIHVAIVEDDPSFRDALSKALEATPDMRLANIAGTRAEGLAMLQGPPADVLLVDLGLPD 184 P+IHVAIVEDDP F DAL++AL +PDMRL +AG+RAEGL +L G PADVLLVDLGLPD Sbjct: 11 PAIHVAIVEDDPGFLDALTQALACSPDMRLIGVAGSRAEGLRLLDGTPADVLLVDLGLPD 70 Query: 185 GSGIDVIHAAILRWPGCNIMVSTNFGDETHVMRSIEAGAAGYLLKDSSPAKIVDEIRSLA 244 GSGIDVI AA +W C+IMVST+FGDETHVMRSIEAGAAGYLLKDSS A+I+DEIRSLA Sbjct: 71 GSGIDVIEAAARKWSACSIMVSTHFGDETHVMRSIEAGAAGYLLKDSSAARILDEIRSLA 130 Query: 245 SGGSPISPIIARQVLARH---GAPGTPDR 270 SGGSPISPIIARQ+LAR GA G D Sbjct: 131 SGGSPISPIIARQILARFRQGGARGAVDE 159