BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0061.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003052429.1| MarR family transcriptional regulator [Methy...   103   9e-21
ref|YP_001561343.1| MarR family transcriptional regulator [Delft...    92   2e-17
ref|ZP_08407311.1| MarR family transcriptional regulator [Hylemo...    89   2e-16
ref|ZP_03541105.1| transcriptional regulator, MarR family [Comam...    78   6e-13
ref|ZP_07046035.1| transcriptional regulator, MarR family protei...    75   4e-12

>ref|YP_003052429.1| MarR family transcriptional regulator [Methylovorus glucosetrophus
           SIP3-4]
 ref|YP_004040980.1| MarR family transcriptional regulator [Methylovorus sp. MP688]
 gb|ACT51902.1| transcriptional regulator, MarR family [Methylovorus glucosetrophus
           SIP3-4]
 gb|ADQ85744.1| transcriptional regulator, MarR family [Methylovorus sp. MP688]
          Length = 156

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 85/130 (65%)

Query: 1   MHLYRSGRSQAFRDDEHGITHMESRVLNYFAHHPGATQKDLAAHSGRDKAQLTRLVRGLR 60
           MH++R+ + +  R+    +THME + L +FA HP AT  DL  HSGRDKAQL RL+  LR
Sbjct: 26  MHVFRAQQFRLIREQALDMTHMEYKALGFFARHPHATLSDLVTHSGRDKAQLARLITDLR 85

Query: 61  DGGYLESKEDVTDRRSTCLQLSPQGQALHAELMKSGAQILERAVDGLSAQQCEELVQLME 120
             G L+++ D  DRRST L LS QG A+   L ++   +  +AV GLS ++ ++L++L++
Sbjct: 86  KKGLLDAQPDEHDRRSTRLNLSAQGAAIIHGLQEAEHALSAQAVQGLSEEEHQQLLRLLK 145

Query: 121 IIQTNLEKGR 130
            + +NL+K +
Sbjct: 146 KVGSNLDKSQ 155


>ref|YP_001561343.1| MarR family transcriptional regulator [Delftia acidovorans SPH-1]
 ref|YP_004485716.1| MarR family transcriptional regulator [Delftia sp. Cs1-4]
 gb|ABX32958.1| transcriptional regulator, MarR family [Delftia acidovorans SPH-1]
 gb|AEF87361.1| transcriptional regulator, MarR family [Delftia sp. Cs1-4]
          Length = 146

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 73/129 (56%)

Query: 1   MHLYRSGRSQAFRDDEHGITHMESRVLNYFAHHPGATQKDLAAHSGRDKAQLTRLVRGLR 60
           +HL+RS   +     E G+T  E RVL Y   HPG TQ+DL  HS  DKAQL R++  L+
Sbjct: 17  LHLFRSRMREDMESMEPGLTPNEVRVLMYVGRHPGRTQRDLVDHSHMDKAQLARMLAQLQ 76

Query: 61  DGGYLESKEDVTDRRSTCLQLSPQGQALHAELMKSGAQILERAVDGLSAQQCEELVQLME 120
           + G+L+ + D  DRR  CL LSPQGQAL   L +S   +  R +        ++L+ L+E
Sbjct: 77  EQGWLDREPDARDRRVRCLSLSPQGQALFDRLRQSRQALAARLLKDWEPAAQQQLMALLE 136

Query: 121 IIQTNLEKG 129
             + ++E  
Sbjct: 137 RARDSVEAA 145


>ref|ZP_08407311.1| MarR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gb|EGI75498.1| MarR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 149

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 76/126 (60%)

Query: 1   MHLYRSGRSQAFRDDEHGITHMESRVLNYFAHHPGATQKDLAAHSGRDKAQLTRLVRGLR 60
           MHL+R+ + +   +    ++HME + L + A HPGATQ +L   S RDKAQ+ RL+  LR
Sbjct: 15  MHLHRAQQLRGLPEGPSELSHMEGKALGFIARHPGATQSELVTRSRRDKAQIARLIGHLR 74

Query: 61  DGGYLESKEDVTDRRSTCLQLSPQGQALHAELMKSGAQILERAVDGLSAQQCEELVQLME 120
           + G +E++ D  DRRS  LQLS  GQ LH    +   ++  + +  LSA++   LV L++
Sbjct: 75  ERGLIETQVDAQDRRSQRLQLSAAGQRLHETQQERWRKLARQGMASLSAEENRLLVALLQ 134

Query: 121 IIQTNL 126
            ++ +L
Sbjct: 135 KVEQSL 140


>ref|ZP_03541105.1| transcriptional regulator, MarR family [Comamonas testosteroni
           KF-1]
 gb|EED65391.1| transcriptional regulator, MarR family [Comamonas testosteroni
           KF-1]
          Length = 147

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 1   MHLYRSGRSQAFRDDEHGITHMESRVLNYFAHHPGATQKDLAAHSGRDKAQLTRLVRGLR 60
           +HL+R+   Q+    + G+T  E R+L +   HPG TQK+L  HS  DKAQ+ R +  L+
Sbjct: 17  LHLFRARLLQSLEAVQPGLTFNEFRILMHTGRHPGITQKELVEHSHTDKAQMARTLAQLQ 76

Query: 61  DGGYLESKEDVTDRRSTCLQLSPQGQALHAELMKSGAQILERAVDGLSAQQCEELVQLME 120
           D G+LE      D+R  CLQLS +GQ L  +L     QI   A + LSA    +   L E
Sbjct: 77  DKGWLERSASEADKRVRCLQLSARGQQLFDQLRHRREQI---ATELLSATPAAQQALLHE 133

Query: 121 IIQTNLE 127
           +++  L+
Sbjct: 134 LLRQALD 140


>ref|ZP_07046035.1| transcriptional regulator, MarR family protein [Comamonas
           testosteroni S44]
 gb|EFI60251.1| transcriptional regulator, MarR family protein [Comamonas
           testosteroni S44]
          Length = 147

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 60/111 (54%)

Query: 1   MHLYRSGRSQAFRDDEHGITHMESRVLNYFAHHPGATQKDLAAHSGRDKAQLTRLVRGLR 60
           +HL+R+   ++    + G+T  E R+L +   HPG TQK+L  HS  DKAQ+ R +  L+
Sbjct: 17  LHLFRARLLESLEAVQPGLTFNEFRILMHTGRHPGITQKELVEHSHTDKAQMARTLAQLQ 76

Query: 61  DGGYLESKEDVTDRRSTCLQLSPQGQALHAELMKSGAQILERAVDGLSAQQ 111
           D G+LE      D+R  CLQLS +GQ L  +L     QI    +    A Q
Sbjct: 77  DKGWLERSASEADKRVRCLQLSARGQQLFDQLRHRREQIATELLSDFPAAQ 127