BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0043.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08273714.1| PAS/PAC sensor signal transduction histidine ... 566 e-159 ref|YP_003777119.1| two component transmembrane sensor histidine... 553 e-155 ref|YP_284197.1| PAS [Dechloromonas aromatica RCB] >gi|71846231|... 382 e-104 ref|ZP_02359245.1| sensor histidine kinase [Burkholderia oklahom... 338 1e-90 ref|ZP_02370181.1| probable two-component sensor kinase [Burkhol... 336 6e-90 >ref|ZP_08273714.1| PAS/PAC sensor signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32792.1| PAS/PAC sensor signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 440 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 274/433 (63%), Positives = 341/433 (78%), Gaps = 5/433 (1%) Query: 4 QFETFESSPL-----SSADRVADVAPVNIAQRFEYLIANTPAIIYSSVPSGDFKMTFVSE 58 QF F+ PL A+ V+ R EYLIANTPAIIYSSVP+GDFKMTFVS+ Sbjct: 2 QFHDFDQQPLPQPHIDPAEHAGASTLVSTNARLEYLIANTPAIIYSSVPTGDFKMTFVSD 61 Query: 59 NASRVLGYDPKEMVADPNFWFDHIHPDDAPDIFSSLAMLFVEGERAYEYRFLTKDKRYLW 118 NA RVLGY+P +MVADPNFWFDHIHP+D P IFSSLA+LFVEG+R+YEYRF T D YLW Sbjct: 62 NARRVLGYEPADMVADPNFWFDHIHPEDIPTIFSSLALLFVEGQRSYEYRFKTSDGIYLW 121 Query: 119 MHDSLRLIRDENNNPVEVIGSLTNITERKLMEEALQRTGEEQRSLINKLKEAQEQLLQSE 178 MHD+LRL+RD NN P+EV+G L+NITERK MEEALQ+ G+EQ+ +I ++++ Q QLLQSE Sbjct: 122 MHDTLRLMRDANNEPLEVVGLLSNITERKKMEEALQKKGDEQQRMIEEMQQMQAQLLQSE 181 Query: 179 KMASIGQLAAGVAHEINNPVGFVSSNMKSLQTYVDQLLEVIVRQDALLSDDSLGEDLRQQ 238 KMASIGQLAAG+AHEINNPVGFV+SN+ SL+ YVD LL+VI R DA ++ + L+ Q Sbjct: 182 KMASIGQLAAGIAHEINNPVGFVNSNLGSLRAYVDTLLDVIERYDAAVATTADMSALKSQ 241 Query: 239 ARQLSASADLAYLKGDVVELITESLEGLKRVKDIVQSLKDFSHVGESDWQMVDIRKGLES 298 Q+ A++ YL+ D V L++ESL+GLKRV+DIVQSLKDF+HVGESDWQ+ D+ GL+S Sbjct: 242 LAQIQQEAEVDYLREDAVALVSESLDGLKRVRDIVQSLKDFAHVGESDWQVADLHHGLDS 301 Query: 299 TITIANNELKYKTVIERQYGELPLIKGLASQLNQVFMNLLVNAAHSFAERGTIRIRTECK 358 T+ IA NE KYK IE+ YG+LPL+ LASQ+NQVFMNL++NAA + ++GTI IRT Sbjct: 302 TLMIAANEFKYKASIEKHYGKLPLVMCLASQINQVFMNLIINAAQAITDKGTITIRTGVS 361 Query: 359 EDWVYIQVEDTGCGIPPENLSRIFEPFFTTKPIGSGTGLGLSLSYGIVQKHGGRIDVQSE 418 +DWV+I++ DTG GI + ++RIFEPFFTTKPIG GTGLGLSLSY IV +H GRI+V S+ Sbjct: 362 DDWVWIEIGDTGKGIAADQINRIFEPFFTTKPIGQGTGLGLSLSYNIVSQHSGRIEVDSQ 421 Query: 419 VGVGTCFTVCLPV 431 V +GT FTV LP+ Sbjct: 422 VDLGTRFTVHLPI 434 >ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65211.1| two component transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 454 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 272/429 (63%), Positives = 324/429 (75%), Gaps = 2/429 (0%) Query: 5 FETFESSPLSSADRVAD--VAPVNIAQRFEYLIANTPAIIYSSVPSGDFKMTFVSENASR 62 FE + PL +A A A + R+ ++I NTPAIIYSSVPSGDF++TFVSENASR Sbjct: 7 FEVSQVCPLPAAKEEAPDFCALIKANARYRHIIGNTPAIIYSSVPSGDFRLTFVSENASR 66 Query: 63 VLGYDPKEMVADPNFWFDHIHPDDAPDIFSSLAMLFVEGERAYEYRFLTKDKRYLWMHDS 122 VLGY+P EM+ DPNFWF+HIHPDD IFSSLAMLFVE ++ YEYRF T + YLWMHD+ Sbjct: 67 VLGYEPCEMLDDPNFWFNHIHPDDTAQIFSSLAMLFVEDQKIYEYRFRTSNGSYLWMHDT 126 Query: 123 LRLIRDENNNPVEVIGSLTNITERKLMEEALQRTGEEQRSLINKLKEAQEQLLQSEKMAS 182 LRLIRD + P EVIG +T+IT RK ME+ LQR EEQR LI +LK AQ QL+QSEK+AS Sbjct: 127 LRLIRDPDGTPQEVIGLMTDITGRKEMEDTLQRQAEEQRKLIEQLKMAQAQLMQSEKLAS 186 Query: 183 IGQLAAGVAHEINNPVGFVSSNMKSLQTYVDQLLEVIVRQDALLSDDSLGEDLRQQARQL 242 IGQLAAGVAHEINNP+GFVS+N+ +L YV LLE I L ++Q R Sbjct: 187 IGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCLQGGALPAAMAQEQLRSF 246 Query: 243 SASADLAYLKGDVVELITESLEGLKRVKDIVQSLKDFSHVGESDWQMVDIRKGLESTITI 302 A ADLA+L DV EL+ ES EGL+RV++IVQSLKDFS +GES+WQM D+ +GL+ST+ I Sbjct: 247 EARADLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESNWQMTDLHRGLDSTLNI 306 Query: 303 ANNELKYKTVIERQYGELPLIKGLASQLNQVFMNLLVNAAHSFAERGTIRIRTECKEDWV 362 ANNELKYK I +QYGELPL+K LAS+LNQVFMNLLVNAA + +ERGT+ I T D V Sbjct: 307 ANNELKYKVSIVKQYGELPLVKCLASELNQVFMNLLVNAAQAISERGTVTICTARAGDKV 366 Query: 363 YIQVEDTGCGIPPENLSRIFEPFFTTKPIGSGTGLGLSLSYGIVQKHGGRIDVQSEVGVG 422 + + DTG GI PENL+RIFEPFFTTKP+GSGTGLGLSLSYGIV+KHGG I V S G G Sbjct: 367 SVSISDTGHGIAPENLNRIFEPFFTTKPVGSGTGLGLSLSYGIVKKHGGDIRVSSAPGCG 426 Query: 423 TCFTVCLPV 431 T FT+ LP+ Sbjct: 427 TTFTIELPI 435 >ref|YP_284197.1| PAS [Dechloromonas aromatica RCB] gb|AAZ45727.1| PAS protein [Dechloromonas aromatica RCB] Length = 1187 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/424 (47%), Positives = 275/424 (64%), Gaps = 5/424 (1%) Query: 14 SSADRVADVAPVNIAQRFEYLIAN-TPAIIYSSVPSGDFKMTFVSENASRVLGYDPKEMV 72 S A R+A A R + N +P I + +G + + FVS+N + GY +++ Sbjct: 756 SDAWRIASQQRAEQALRIAMQVVNASPVICFRWQATGGWPVVFVSDNVTN-WGYTVADLI 814 Query: 73 ADPNFWFDHIHPDDAPDIFSSLAMLFVEGERAY--EYRFLTKDKRYLWMHDSLRLIRDEN 130 A + D +HPDD + + EG Y EYR LT D R +W+ D +++R+ + Sbjct: 815 AGNPAFADMVHPDDLSRVVEEVTRYTAEGRTDYIQEYRLLTGDGRVIWISDRTQVLRNAS 874 Query: 131 NNPVEVIGSLTNITERKLMEEALQRTGEEQRSLINKLKEAQEQLLQSEKMASIGQLAAGV 190 G LT+ITER E L T QR L +L+EA QLLQSEKMASIGQLAAG+ Sbjct: 875 GGAEFYDGVLTDITERHTQTEELTTTLAAQRQLNKRLEEAHNQLLQSEKMASIGQLAAGI 934 Query: 191 AHEINNPVGFVSSNMKSLQTYVDQLLEVIVRQDALLSDDSLGEDLRQQARQLSASADLAY 250 AHE+NNP+GFV SN+ +L++Y+ L+E+I D L+DD+ R +L D AY Sbjct: 935 AHELNNPIGFVHSNLGTLESYLRDLMEIIDAYDKGLADDTDLAAQRTAIARLREERDFAY 994 Query: 251 LKGDVVELITESLEGLKRVKDIVQSLKDFSHVGESDWQMVDIRKGLESTITIANNELKYK 310 ++GD+++L++ES +GL RV+ IVQ LK FSHV E +WQ D+ +GL+ST+ I NELKYK Sbjct: 995 VRGDIIQLLSESKDGLSRVRKIVQDLKTFSHVSEQEWQWTDLHQGLDSTLNIVWNELKYK 1054 Query: 311 TVIERQYGELPLIKGLASQLNQVFMNLLVNAAHSFAERGTIRIRTECK-EDWVYIQVEDT 369 + ++YG++P I L SQLNQVFMNLLVNA H+ RGTI IRT + +D V I++ DT Sbjct: 1055 CQVVKEYGDIPKIHCLISQLNQVFMNLLVNAGHAIETRGTITIRTRRQGDDAVCIEISDT 1114 Query: 370 GCGIPPENLSRIFEPFFTTKPIGSGTGLGLSLSYGIVQKHGGRIDVQSEVGVGTCFTVCL 429 G GI PE+LSRIFEPFFTTKP+G GTGLGLSLSYGI+ KH GRI+V S++GVG+ F + L Sbjct: 1115 GKGIAPEHLSRIFEPFFTTKPVGKGTGLGLSLSYGIIDKHHGRIEVDSQLGVGSTFRIIL 1174 Query: 430 PVTQ 433 P+ Q Sbjct: 1175 PINQ 1178 >ref|ZP_02359245.1| sensor histidine kinase [Burkholderia oklahomensis EO147] ref|ZP_02366305.1| sensor histidine kinase [Burkholderia oklahomensis C6786] Length = 389 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 166/301 (55%), Positives = 215/301 (71%), Gaps = 2/301 (0%) Query: 143 ITERKLMEEALQRTGEEQRSLINKLKEAQEQLLQSEKMASIGQLAAGVAHEINNPVGFVS 202 I ER+ + L+ E QR LI +L +A +LLQSEK+ASIGQLAAGVAHEINNP+GFV Sbjct: 91 IDERRRTQAELETEREAQRHLIEQLAQAHGKLLQSEKLASIGQLAAGVAHEINNPIGFVD 150 Query: 203 SNMKSLQTYVDQLLEVIVRQDALLSDDSLGEDLRQQARQLSASADLAYLKGDVVELITES 262 SN++ L+T+V QLL+V+ QD + + LG D R + R +ADL YL+GD+ LI ES Sbjct: 151 SNLRMLKTWVRQLLDVMALQDTMFGE--LGGDARARLRAAHEAADLDYLRGDIGTLIDES 208 Query: 263 LEGLKRVKDIVQSLKDFSHVGESDWQMVDIRKGLESTITIANNELKYKTVIERQYGELPL 322 +EG RV+ IVQ L+DFS G +W DI KGLE+T+ +A NELKYK + + YGELP Sbjct: 209 IEGASRVRRIVQDLRDFSRAGSEEWSFADIHKGLEATLNVARNELKYKADVVKDYGELPP 268 Query: 323 IKGLASQLNQVFMNLLVNAAHSFAERGTIRIRTECKEDWVYIQVEDTGCGIPPENLSRIF 382 ++ + SQLNQV MNLL+NA + ERGTI IRT + D V I VEDTG G+P + L++IF Sbjct: 269 VECMPSQLNQVVMNLLMNAVQAIPERGTITIRTRREGDGVTIAVEDTGVGMPADRLAKIF 328 Query: 383 EPFFTTKPIGSGTGLGLSLSYGIVQKHGGRIDVQSEVGVGTCFTVCLPVTQIKETLQQDA 442 +PFFTTKP+G GTGLGLS+SYGIV+KHGGRI V +E G G+CFT+ LP+ + + A Sbjct: 329 DPFFTTKPVGKGTGLGLSVSYGIVEKHGGRIAVDTEPGKGSCFTIWLPIVRQRTEPAASA 388 Query: 443 G 443 G Sbjct: 389 G 389 >ref|ZP_02370181.1| probable two-component sensor kinase [Burkholderia thailandensis TXDOH] Length = 389 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 165/300 (55%), Positives = 217/300 (72%), Gaps = 4/300 (1%) Query: 143 ITERKLMEEALQRTGEEQRSLINKLKEAQEQLLQSEKMASIGQLAAGVAHEINNPVGFVS 202 I ERK + L+ E QR LI +L +A QLLQSEK+ASIGQLAAGVAHEINNP+GFV Sbjct: 91 IEERKRTQAELETEREAQRHLIEQLAQAHGQLLQSEKLASIGQLAAGVAHEINNPIGFVD 150 Query: 203 SNMKSLQTYVDQLLEVIVRQDALLSDDSLGEDLRQQARQLSASADLAYLKGDVVELITES 262 SN+++L+T+V QLL+V+ +DA+++D G D R + R DL YL+GD+ LI ES Sbjct: 151 SNLRTLKTWVRQLLDVMALEDAMIAD--AGGDARARLRAAQEEVDLDYLRGDIGTLIDES 208 Query: 263 LEGLKRVKDIVQSLKDFSHVGESDWQMVDIRKGLESTITIANNELKYKTVIERQYGELPL 322 +EG RV+ IVQ L+DFS G +W DI +GLE+T+ + NELKYK + + YGELP Sbjct: 209 IEGASRVRRIVQDLRDFSRAGSEEWNFADIHEGLEATLNVVRNELKYKAEVVKDYGELPA 268 Query: 323 IKGLASQLNQVFMNLLVNAAHSFAERGTIRIRTECKEDWVYIQVEDTGCGIPPENLSRIF 382 ++ + SQLNQV MNLL+NA + ERGTI IRT + D V I +EDTG GIP + +++IF Sbjct: 269 VECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGDGVTIAIEDTGVGIPADRIAKIF 328 Query: 383 EPFFTTKPIGSGTGLGLSLSYGIVQKHGGRIDVQSEVGVGTCFTVCLPVTQIKETLQQDA 442 +PF+TTKP+G GTGLGLS+SYGIV+KHGGRI+V SE G G+ FT+ LP+ ++ L QDA Sbjct: 329 DPFYTTKPVGKGTGLGLSVSYGIVEKHGGRIEVDSEPGNGSRFTIWLPI--VRRRLLQDA 386