BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0037.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001021639.1| putative two-component sensor [Methylibium p... 392 e-107 gb|EGW60371.1| PAS/PAC sensor signal transduction histidine kina... 375 e-102 ref|YP_003523926.1| histidine kinase [Sideroxydans lithotrophicu... 357 1e-96 ref|YP_350283.1| response regulator receiver Signal transduction... 357 1e-96 ref|YP_004355932.1| histidine kinase, Hybrid [Pseudomonas brassi... 353 2e-95 >ref|YP_001021639.1| putative two-component sensor [Methylibium petroleiphilum PM1] gb|ABM95404.1| putative two-component sensor [Methylibium petroleiphilum PM1] Length = 305 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/301 (63%), Positives = 231/301 (76%), Gaps = 3/301 (0%) Query: 22 LRRTAAEAELV---RRNAELTELNRKLSMTQEQLMQSEKLASIGQLAAGVAHEINNPIGY 78 + RT E+EL+ R N EL LN+ L Q+QL+QSE+LASIGQLAAGVAHEINNPIGY Sbjct: 4 MSRTPPESELISLQRANEELRALNQSLHSAQDQLLQSERLASIGQLAAGVAHEINNPIGY 63 Query: 79 IFSNFSTLETYIGSLLRMLGAYEARERDRSSESAAKELAAVRDEVEIDFLKEDIPALMSE 138 +FSNF TLE Y+ L ML AYE E + + A LAA+R+ VE+D+LK+DIPALM+E Sbjct: 64 VFSNFGTLEAYLERLFEMLEAYEQAEPALADSTIADRLAALRERVELDYLKQDIPALMAE 123 Query: 139 SREGITRVRKIVQDLKDFSRADTALEWQWANLHQGIDSTLNIVNNEIKYKADVIKNYGVL 198 S+EG++RVRKIVQDLKDFSR DT EW WA+LHQGIDSTLNIV NEIKY+ADV + YG L Sbjct: 124 SKEGLSRVRKIVQDLKDFSRVDTHQEWGWASLHQGIDSTLNIVANEIKYRADVKREYGAL 183 Query: 199 PDVECLPSQINQVVMNLVVNAAHAIDGARGTITITTRVVDADAEIEIADNGSGIAPENLS 258 PD+ECLPS++NQV +NL+VNAAHAI RG I + + +E+ DNGSGIAPE+L+ Sbjct: 184 PDIECLPSELNQVFLNLLVNAAHAIGPQRGLIVVRSGDAGDKVWVEVEDNGSGIAPEHLA 243 Query: 259 RIFDPFFTTKPVGQGTGLGLSLAYGIMQKHQGSINVTSILGAGTTFTLRFPVRHDAGDDD 318 RIFDPFFTTKPVG+GTGLGLSLAYGI+QKHQG I+V S G G+ F + PVR + + Sbjct: 244 RIFDPFFTTKPVGRGTGLGLSLAYGIVQKHQGRIDVRSEPGRGSCFRVTLPVRRPSAEGG 303 Query: 319 S 319 S Sbjct: 304 S 304 >gb|EGW60371.1| PAS/PAC sensor signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 736 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/314 (58%), Positives = 243/314 (77%), Gaps = 4/314 (1%) Query: 1 MLVVKRTHELAATNAKMEEDILRRTAAEAELVRRNAELTELNRKLSMTQEQLMQSEKLAS 60 +LV +RT +L+ +EED+ RR A+E EL +RNAEL E+N++L QEQL+QSEK+AS Sbjct: 414 ILVERRTAQLSLAKQALEEDVRRREASENELRQRNAELLEVNKRLQEAQEQLVQSEKMAS 473 Query: 61 IGQLAAGVAHEINNPIGYIFSNFSTLETYIGSLLRMLGAYEARERDRSSE-SAAKELAAV 119 IGQLAAGVAHEINNPIGY+ SN STL Y+ + +L + SE AA+ +A V Sbjct: 474 IGQLAAGVAHEINNPIGYVQSNLSTLGRYLEDMQTVLDSLATAVAQLPSEHPAAQAVARV 533 Query: 120 RDEVEIDFLKEDIPALMSESREGITRVRKIVQDLKDFSRADTALEWQWANLHQGIDSTLN 179 + +++ DFL ED+P+L+++SR+GI RVRKIV DLKDFSR D + +WQWA+LHQG+DSTLN Sbjct: 534 KQDLDFDFLLEDLPSLVTQSRDGIDRVRKIVADLKDFSRLDASQDWQWADLHQGLDSTLN 593 Query: 180 IVNNEIKYKADVIKNYGVLPDVECLPSQINQVVMNLVVNAAHAI-DGARGTITITTRVVD 238 IVNNEIKY+A+V++ YG LP+VECLPSQ+NQV +NL+VN+AHA+ +G G IT+ + + Sbjct: 594 IVNNEIKYRAEVVREYGQLPEVECLPSQLNQVFLNLLVNSAHAMPEGQMGRITLRSGHDE 653 Query: 239 ADAEI--EIADNGSGIAPENLSRIFDPFFTTKPVGQGTGLGLSLAYGIMQKHQGSINVTS 296 ++ E+ DNGSGI+PEN+ R+FDPFFTTKPVG+GTGLGLSL+YGI+QKH G I V+S Sbjct: 654 PAHQVWLEVEDNGSGISPENMHRLFDPFFTTKPVGKGTGLGLSLSYGIVQKHHGQITVSS 713 Query: 297 ILGAGTTFTLRFPV 310 LG GTTF + PV Sbjct: 714 ELGKGTTFRIVLPV 727 >ref|YP_003523926.1| histidine kinase [Sideroxydans lithotrophicus ES-1] gb|ADE11539.1| histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 511 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/314 (57%), Positives = 233/314 (74%), Gaps = 9/314 (2%) Query: 4 VKRTHE-LAATNAKMEEDILRRTA----AEAELVRRNAELTELNRKLSMTQEQLMQSEKL 58 +++ HE L A N ++EE + +RTA A +L+ N EL +LN + TQ QL+QSEK+ Sbjct: 194 LEKEHEALQALNEQLEERVKQRTASLEQANRKLMASNEELKQLNERFESTQNQLLQSEKM 253 Query: 59 ASIGQLAAGVAHEINNPIGYIFSNFSTLETYIGSLLRMLGAYEARERDRSSESAAKELAA 118 ASIGQLAAGVAHEINNP+G++ SN TL YI S+ R++ AY A E SA + +A Sbjct: 254 ASIGQLAAGVAHEINNPVGFVNSNMGTLGKYITSMFRVIDAYAAAESGNDG-SALEAVAR 312 Query: 119 VRDEVEIDFLKEDIPALMSESREGITRVRKIVQDLKDFSRADTALEWQWANLHQGIDSTL 178 V+ EV+ +L EDIP L+ ES++G+ RV++IVQDLKDFS D + WQ AN+ GIDSTL Sbjct: 313 VKQEVDFPYLVEDIPNLLQESQDGLARVKRIVQDLKDFSHVDES-NWQHANIEHGIDSTL 371 Query: 179 NIVNNEIKYKADVIKNYGVLPDVECLPSQINQVVMNLVVNAAHAIDGARGTITITTRVV- 237 N+VNNE+KYKA+V+K Y LPDVEC+PSQ+NQV MNL+VNAAHAID +GTIT+ T + Sbjct: 372 NVVNNELKYKAEVVKEYAGLPDVECMPSQLNQVFMNLLVNAAHAID-KQGTITVRTGIKG 430 Query: 238 DADAEIEIADNGSGIAPENLSRIFDPFFTTKPVGQGTGLGLSLAYGIMQKHQGSINVTSI 297 D + +E+ D G GIAPE+++RIFDPFFTTKPVGQGTGLGLSL+YGI+QKH G I V S Sbjct: 431 DDEIWVEVQDTGKGIAPEHINRIFDPFFTTKPVGQGTGLGLSLSYGIVQKHHGRIEVKSE 490 Query: 298 LGAGTTFTLRFPVR 311 +G G+TF + PVR Sbjct: 491 VGKGSTFRVCLPVR 504 >ref|YP_350283.1| response regulator receiver Signal transduction histidine kinase [Pseudomonas fluorescens Pf0-1] gb|ABA76292.1| putative two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 467 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 174/262 (66%), Positives = 209/262 (79%), Gaps = 1/262 (0%) Query: 51 QLMQSEKLASIGQLAAGVAHEINNPIGYIFSNFSTLETYIGSLLRMLGAYEARERDRSSE 110 QL+QSEKLAS+GQLAAGVAHEINNPIG+I SN TL+ Y LL MLGAY ++ +E Sbjct: 202 QLVQSEKLASLGQLAAGVAHEINNPIGFISSNLGTLDGYFQQLLAMLGAYHTAGQNLPAE 261 Query: 111 SAAKELAAVRDEVEIDFLKEDIPALMSESREGITRVRKIVQDLKDFSRADTALEWQWANL 170 +AA +L +R+ +E+D+L EDIP L+ ES+EGI RV +IV+DLKDFSR D+ EWQWANL Sbjct: 262 AAA-QLQQLRERLELDYLLEDIPTLIRESKEGIGRVGQIVRDLKDFSRVDSHQEWQWANL 320 Query: 171 HQGIDSTLNIVNNEIKYKADVIKNYGVLPDVECLPSQINQVVMNLVVNAAHAIDGARGTI 230 QGI+STLNIV E+KYKADV+K Y LPD+ECLPSQINQV+MNLVVNAA A+ RGTI Sbjct: 321 QQGIESTLNIVAGELKYKADVVKEYQDLPDIECLPSQINQVIMNLVVNAAQAMGPERGTI 380 Query: 231 TITTRVVDADAEIEIADNGSGIAPENLSRIFDPFFTTKPVGQGTGLGLSLAYGIMQKHQG 290 T+ T V A IE+AD GSGIAPE L +IFDPFFTTKPVGQGTGLGLSL+YGI++KH G Sbjct: 381 TLRTGVQGETAIIEVADTGSGIAPETLQKIFDPFFTTKPVGQGTGLGLSLSYGIVKKHGG 440 Query: 291 SINVTSILGAGTTFTLRFPVRH 312 I+V S LGAGTTF ++ P+R Sbjct: 441 DISVRSTLGAGTTFRVQLPLRQ 462 >ref|YP_004355932.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70928.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 468 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/300 (59%), Positives = 222/300 (74%), Gaps = 9/300 (3%) Query: 16 KMEEDILRRTAAEAELVRRNAELTELN---RKLSMTQEQLMQSEKLASIGQLAAGVAHEI 72 K+E+ + +RT A ++ +EL ++ RK M + QL+QSEKLAS+GQLAAGVAHEI Sbjct: 170 KLEDLVEQRTQA----FKQASELLQMEIDERK--MLETQLVQSEKLASLGQLAAGVAHEI 223 Query: 73 NNPIGYIFSNFSTLETYIGSLLRMLGAYEARERDRSSESAAKELAAVRDEVEIDFLKEDI 132 NNPIG+I SN L+ Y G L ML AY + E +S +L +R++VE+DFL EDI Sbjct: 224 NNPIGFISSNLGALDGYFGKLQEMLSAYGSAEGAIASPELVVQLRKLREQVELDFLVEDI 283 Query: 133 PALMSESREGITRVRKIVQDLKDFSRADTALEWQWANLHQGIDSTLNIVNNEIKYKADVI 192 P L+ ES++GI RV +IV+DLKDFSR D++ EWQ ANL QG+DSTLNIV NEIKYKADV+ Sbjct: 284 PLLIKESKDGIGRVGQIVKDLKDFSRVDSSQEWQMANLQQGMDSTLNIVANEIKYKADVV 343 Query: 193 KNYGVLPDVECLPSQINQVVMNLVVNAAHAIDGARGTITITTRVVDADAEIEIADNGSGI 252 K Y LP+VECLPSQINQV+MNL+VNAA AI RGTIT+ V D IE+ADNGSGI Sbjct: 344 KEYTPLPEVECLPSQINQVIMNLIVNAAQAIGPERGTITLRNGVGDETVWIEVADNGSGI 403 Query: 253 APENLSRIFDPFFTTKPVGQGTGLGLSLAYGIMQKHQGSINVTSILGAGTTFTLRFPVRH 312 P+ L +IFDPFFTTKP+GQGTGLGLSL+YGI++KH G I V S +G GTTF + PVR Sbjct: 404 PPDTLQKIFDPFFTTKPIGQGTGLGLSLSYGIVKKHNGEITVRSEVGVGTTFRVELPVRQ 463