BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0029.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775257.1| transcription regulator protein [Herbaspiril... 546 e-153 ref|YP_004753469.1| LysR family transcriptional regulator [Colli... 519 e-145 ref|ZP_03541207.1| transcriptional regulator, LysR family [Comam... 447 e-124 ref|YP_003280194.1| LysR family transcriptional regulator [Comam... 447 e-124 ref|YP_001562472.1| LysR family transcriptional regulator [Delft... 434 e-120 >ref|YP_003775257.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63349.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/308 (85%), Positives = 284/308 (92%), Gaps = 2/308 (0%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MNIRFLETFVWLA+L+NFRLTAERLHTTQAAVSSRIA+LEQDFGVRLFDR AREV LT D Sbjct: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 GSKALV+AERMVKLMREMK+DMSD++VYAGVIRIGVIESIVHSWFPDFLGR+HK FPRLQ Sbjct: 61 GSKALVHAERMVKLMREMKEDMSDREVYAGVIRIGVIESIVHSWFPDFLGRLHKTFPRLQ 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 IEI SDTTIHL EQFSKGNLD+VLQAE V G ++N+ LCEFPMRWVGSPKL+IGSETLS Sbjct: 121 IEIVSDTTIHLHEQFSKGNLDLVLQAEAVIGPQVSNLALCEFPMRWVGSPKLDIGSETLS 180 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERG--ALHVNCIASVATMIRLVTDGFGVAAV 238 L+DLA FPIISFARNSGPHAVIERLFS S+R LH+NCIASVATMIRL TDGFG+ AV Sbjct: 181 LADLAAFPIISFARNSGPHAVIERLFSDSQRSERTLHINCIASVATMIRLATDGFGITAV 240 Query: 239 PPAIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWG 298 PPAIIQRELNEE LH LRVD EFPALV++A FRSD+ENPLTETVARIAQETAADFALNWG Sbjct: 241 PPAIIQRELNEESLHLLRVDTEFPALVLIASFRSDHENPLTETVARIAQETAADFALNWG 300 Query: 299 QEIARLPS 306 EIARLP+ Sbjct: 301 HEIARLPA 308 >ref|YP_004753469.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62646.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 321 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/307 (79%), Positives = 279/307 (90%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MNIRFLETFVWLAKLKNFRLTAE+LHTTQAAVSSRIATLEQDFGVRLFDRGAREV LTTD Sbjct: 6 MNIRFLETFVWLAKLKNFRLTAEKLHTTQAAVSSRIATLEQDFGVRLFDRGAREVALTTD 65 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 GSKALVYAER+VKLMREMK+DMS + Y+GV+RIGVIESIVHSWFPD +GR+HK+FP+L+ Sbjct: 66 GSKALVYAERIVKLMREMKEDMSARDNYSGVLRIGVIESIVHSWFPDLIGRIHKLFPQLE 125 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 IEIASDTTIHLREQFSKG+LD+VLQAEPV +I N+ LCE PMRWVGS KL IGSETLS Sbjct: 126 IEIASDTTIHLREQFSKGDLDLVLQAEPVIAPNIRNLKLCELPMRWVGSSKLEIGSETLS 185 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVPP 240 LSDLA FP++SFARNSGPH +IE+LFS SERG+LH+NCI SVATMIRLV+DGFGVA VPP Sbjct: 186 LSDLAAFPLVSFARNSGPHTIIEQLFSNSERGSLHINCITSVATMIRLVSDGFGVAVVPP 245 Query: 241 AIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWGQE 300 AIIQRELN+ L LRVD +FPAL+++A FR+D EN LTET+A IAQ+TA++FALNWG E Sbjct: 246 AIIQRELNDGSLQLLRVDADFPALLLMASFRNDPENALTETIASIAQQTASEFALNWGPE 305 Query: 301 IARLPSQ 307 IARLP++ Sbjct: 306 IARLPAE 312 >ref|ZP_03541207.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gb|EED65493.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 313 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 254/306 (83%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MN+RFLETFV LA+L+NFR+TAERL TTQAAVSSRIATLEQ+FGVRLFDRG REVTLT D Sbjct: 1 MNLRFLETFVLLAELRNFRMTAERLFTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G+KALV+AERM++LMREM++DM DKQ YAGVIRIG IESIVHSWFPDFL + + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 +EIA DTTIH+ EQ KG LD+ LQA+PV G I N++L EF M WVGSPKL IG ETLS Sbjct: 121 VEIACDTTIHMSEQLLKGQLDVSLQAKPVSGGAIANLSLGEFAMAWVGSPKLGIGDETLS 180 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVPP 240 L++LA FPI+SFAR S P+AVIE+LFS + H+NCIASVATMIR+V DG GVAAVPP Sbjct: 181 LAELAAFPIMSFARGSEPYAVIEQLFSAEGNASPHMNCIASVATMIRVVCDGLGVAAVPP 240 Query: 241 AIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWGQE 300 AIIQREL E+ L LRVD EFP+L ++AC+R+D++NPL ETV R A+E A FALN GQ Sbjct: 241 AIIQRELAEQRLRLLRVDREFPSLPLVACWRNDHQNPLAETVVRAAEEVATAFALNHGQA 300 Query: 301 IARLPS 306 +ARLP Sbjct: 301 VARLPG 306 >ref|YP_003280194.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] ref|ZP_07046135.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] gb|ACY34898.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] gb|EFI60351.1| transcriptional regulator, LysR family protein [Comamonas testosteroni S44] Length = 313 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 254/306 (83%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MN+RFLETFV LA+L+NFR+TAERL TTQAAVSSRIATLEQ+FGVRLFDRG REVTLT D Sbjct: 1 MNLRFLETFVLLAELRNFRMTAERLFTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G+KALV+AERM++LMREM++DM DKQ YAGVIRIG IESIVHSWFPDFL + + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 +EIA DTTIH+ EQ KG LD+ LQA+PV G I N++L EF M WVGSPKL IG ETLS Sbjct: 121 VEIACDTTIHMSEQLLKGQLDVSLQAKPVSGGAIANLSLGEFAMAWVGSPKLGIGDETLS 180 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVPP 240 L++LA FPI+SFAR S P+AVIE+LFS + H+NCIASVATMIR+V DG GVAAVPP Sbjct: 181 LAELAAFPIMSFARGSEPYAVIEQLFSAEGSASPHMNCIASVATMIRVVCDGLGVAAVPP 240 Query: 241 AIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWGQE 300 AIIQREL E+ L LRVD EFP+L ++AC+R+D++NPL ETV R A+E A FALN GQ Sbjct: 241 AIIQRELAEQRLRLLRVDREFPSLPLVACWRNDHQNPLAETVVRAAEEVATAFALNHGQA 300 Query: 301 IARLPS 306 +ARLP Sbjct: 301 VARLPG 306 >ref|YP_001562472.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX34087.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 311 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 258/306 (84%) Query: 1 MNIRFLETFVWLAKLKNFRLTAERLHTTQAAVSSRIATLEQDFGVRLFDRGAREVTLTTD 60 MN+RFLETFV LA+L+NFRLTAERL+TTQAAVSSRIATLEQ+FGVRLFDRG REVTLT D Sbjct: 1 MNLRFLETFVLLAELRNFRLTAERLYTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTAD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDKQVYAGVIRIGVIESIVHSWFPDFLGRVHKMFPRLQ 120 G+KALV+AERM++LMREM++DM DKQ YAGVIRIG IESIVHSWFPDFL + + +PRLQ Sbjct: 61 GAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQ 120 Query: 121 IEIASDTTIHLREQFSKGNLDIVLQAEPVPGTHITNINLCEFPMRWVGSPKLNIGSETLS 180 +EIA DTT+H+ EQ KG LD+ LQA+PV + +++L EFPM WVGSPKL IG ETLS Sbjct: 121 VEIACDTTLHMSEQLVKGQLDLSLQAKPVTAAGVGHLSLGEFPMAWVGSPKLGIGDETLS 180 Query: 181 LSDLATFPIISFARNSGPHAVIERLFSGSERGALHVNCIASVATMIRLVTDGFGVAAVPP 240 L++LA FPI+ FAR S P+AVIE+LFS ++H+NCIASVATMIR+V DG GVAAVPP Sbjct: 181 LAELAAFPIMCFARGSEPYAVIEQLFSTESSASVHLNCIASVATMIRVVCDGLGVAAVPP 240 Query: 241 AIIQRELNEEILHTLRVDVEFPALVMLACFRSDNENPLTETVARIAQETAADFALNWGQE 300 AIIQREL E+ L LRVD EFP+L ++ACFR+D++NPLTE VAR A+ETAA FALN GQ Sbjct: 241 AIIQRELAEQRLRLLRVDREFPSLPLVACFRNDHQNPLTEVVARAAEETAAAFALNHGQA 300 Query: 301 IARLPS 306 +ARLP Sbjct: 301 VARLPG 306