BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0021.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751252.1| dipeptide transport system permease dppC [Co... 508 e-142 ref|ZP_02884760.1| binding-protein-dependent transport systems i... 496 e-138 ref|ZP_03265903.1| binding-protein-dependent transport systems i... 492 e-137 ref|NP_519503.1| transmembrane ABC transporter protein [Ralstoni... 491 e-137 ref|YP_003907957.1| binding-protein-dependent transport systems ... 491 e-137 >ref|YP_004751252.1| dipeptide transport system permease dppC [Collimonas fungivorans Ter331] gb|AEK60429.1| Dipeptide transport system permease protein dppC [Collimonas fungivorans Ter331] Length = 305 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/305 (80%), Positives = 276/305 (90%), Gaps = 4/305 (1%) Query: 1 MSTSITPAANTVTATASKP----IRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPY 56 M ++ +N V A A+ P IRTPWSEFWRKF+KQ LA+AAG FVLFL+V+A+ +P+ Sbjct: 1 MRPPVSTPSNPVAAIAAAPLPSTIRTPWSEFWRKFKKQHLAVAAGCFVLFLIVVAVAAPW 60 Query: 57 ISPYDAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVG 116 ++PYDAENYFDYDALNAGPSLAHWFGVDSLG DIFSRIL+GT++SL GFSSVAVGA+VG Sbjct: 61 LTPYDAENYFDYDALNAGPSLAHWFGVDSLGRDIFSRILMGTRISLTAGFSSVAVGAVVG 120 Query: 117 TFLGLVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAF 176 T GL+AGYYEGW DR+IMRICDVLFAFPGILLAI IVAILGNGM+NVI AVAIFSIP F Sbjct: 121 TLAGLIAGYYEGWPDRIIMRICDVLFAFPGILLAIGIVAILGNGMSNVIFAVAIFSIPTF 180 Query: 177 ARLVRGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAAS 236 ARLVRGNTL+LK LT+IEAVRSIGAND TIILRHIFPGT+S+VVVYFTMRIGTSIITAAS Sbjct: 181 ARLVRGNTLALKHLTFIEAVRSIGANDRTIILRHIFPGTVSAVVVYFTMRIGTSIITAAS 240 Query: 237 LSFLGLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDP 296 LSFLG+GAQPP PEWGAMLNEAR+DMMTAPHIAIFPSLAIF TVLAFNLLGDGLRDALDP Sbjct: 241 LSFLGMGAQPPMPEWGAMLNEARSDMMTAPHIAIFPSLAIFFTVLAFNLLGDGLRDALDP 300 Query: 297 KLDQK 301 K+D++ Sbjct: 301 KIDRR 305 >ref|ZP_02884760.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT09554.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 301 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 244/300 (81%), Positives = 266/300 (88%) Query: 1 MSTSITPAANTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPY 60 MST+ T T A + IRTPWSEFWRKFRKQ +ALAAG FVL LVV+AI +P+I PY Sbjct: 1 MSTTATEPNAAKTKNAERTIRTPWSEFWRKFRKQHVALAAGIFVLLLVVVAIAAPHIVPY 60 Query: 61 DAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLG 120 D EN+FDYDALNAGPS AHWFGVDSLG DIFSRIL G+++SL GF SVA+GA++GTF G Sbjct: 61 DPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRILAGSRISLEAGFLSVAIGAVIGTFFG 120 Query: 121 LVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLV 180 L+AGYYEGW DR+ MR+ DVLFAFPGILLAI +VAILGNGM NVI AVAIFSIPAFARLV Sbjct: 121 LLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGMVNVICAVAIFSIPAFARLV 180 Query: 181 RGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFL 240 RGNTL LKQLTYIEA RSIGA+D TII+RHI PGTISSVVVYFTMRIGTSIITAASLSFL Sbjct: 181 RGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGTISSVVVYFTMRIGTSIITAASLSFL 240 Query: 241 GLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLDQ 300 GLGAQPPTPEWGAMLNEARADM+TAPHIA+FPSLAIFLTVLAFNLLGDGLRDALDPKLD+ Sbjct: 241 GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDR 300 >ref|ZP_03265903.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. H160] gb|EEA02458.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. H160] Length = 301 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/300 (80%), Positives = 268/300 (89%) Query: 1 MSTSITPAANTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPY 60 MST+ T + A A + IRTPWSEFWRKFRKQ +ALAAG FVL L+V+AI++P+I PY Sbjct: 1 MSTTATGPNSANPAAAERAIRTPWSEFWRKFRKQHVALAAGVFVLLLIVVAIIAPHIVPY 60 Query: 61 DAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLG 120 D EN+FDYDALNAGPS AHWFGVDSLG DIFSRILVG+++SL GF SVA+GA+VGTF G Sbjct: 61 DPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRILVGSRISLEAGFLSVAIGALVGTFFG 120 Query: 121 LVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLV 180 L+AGYYEGW DR+ MR+ DVLFAFPGILLAI +VAILGNGM NVI AVAIFSIPAFARLV Sbjct: 121 LLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGMINVICAVAIFSIPAFARLV 180 Query: 181 RGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFL 240 RGNTL LKQLTYIEA RSIGA+D TII+RHI PGTISSV+VY TMRIGTSIITAASLSFL Sbjct: 181 RGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGTISSVIVYLTMRIGTSIITAASLSFL 240 Query: 241 GLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLDQ 300 GLGAQPPTPEWGAMLNEARADM++APHIA+FPSLAIFLTVLAFNLLGDGLRDALDPKLD+ Sbjct: 241 GLGAQPPTPEWGAMLNEARADMVSAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDR 300 >ref|NP_519503.1| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000] emb|CAD15084.1| probable transmembrane abc transporter protein [Ralstonia solanacearum GMI1000] Length = 299 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/301 (78%), Positives = 270/301 (89%), Gaps = 2/301 (0%) Query: 1 MSTSITPAANTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPY 60 M+ + +PA + AS+P+RTPWSEFWRKFRKQ LAL AG FV+ LVV AI++P++ P+ Sbjct: 1 MTQASSPA--VIPQAASEPVRTPWSEFWRKFRKQHLALGAGVFVIALVVAAILAPHLVPF 58 Query: 61 DAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLG 120 D ENYFDYDALNAGPS AHWFGVDSLG DIFSRIL+GT++SL GF SV +GA++GT LG Sbjct: 59 DPENYFDYDALNAGPSAAHWFGVDSLGRDIFSRILMGTRISLEAGFVSVVIGALIGTVLG 118 Query: 121 LVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLV 180 L+AGYYEGW DR++MRICDVLFAFPGILLAI IVAILGNGM NVI AVA+FS+PAFARLV Sbjct: 119 LLAGYYEGWWDRIVMRICDVLFAFPGILLAIGIVAILGNGMANVIFAVAVFSVPAFARLV 178 Query: 181 RGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFL 240 RGNTL LK LTY+EA RSIGA+D TI+LRHI PGTISS+VVYF+MRIGTSIITAASLSFL Sbjct: 179 RGNTLMLKHLTYVEAARSIGASDRTILLRHILPGTISSIVVYFSMRIGTSIITAASLSFL 238 Query: 241 GLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLDQ 300 GLGAQPPTPEWGAMLNEARADM+TAPH+AIFPSLAIFLTVLAFNLLGDGLRDALDPK+D+ Sbjct: 239 GLGAQPPTPEWGAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDR 298 Query: 301 K 301 + Sbjct: 299 R 299 >ref|YP_003907957.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] gb|ADN58666.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] Length = 301 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/300 (80%), Positives = 265/300 (88%) Query: 1 MSTSITPAANTVTATASKPIRTPWSEFWRKFRKQPLALAAGAFVLFLVVIAIVSPYISPY 60 MST+ T A + IRTPWSEFWRKFRKQ +ALAAG FVL LVV+AI +P+I PY Sbjct: 1 MSTTATEPNAAKPVRAERAIRTPWSEFWRKFRKQHVALAAGIFVLLLVVVAIAAPHIVPY 60 Query: 61 DAENYFDYDALNAGPSLAHWFGVDSLGHDIFSRILVGTQLSLAVGFSSVAVGAIVGTFLG 120 D EN+FDYDALNAGPS AHWFGVDSLG DIFSRI+ G+++SL GF SVA+GA++GTF G Sbjct: 61 DPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRIVAGSRISLEAGFLSVAIGAVIGTFFG 120 Query: 121 LVAGYYEGWADRVIMRICDVLFAFPGILLAIAIVAILGNGMTNVIIAVAIFSIPAFARLV 180 L+AGYYEGW DR+ MR+ DVLFAFPGILLAI +VAILGNGM NVI AVAIFSIPAFARLV Sbjct: 121 LLAGYYEGWWDRITMRVADVLFAFPGILLAIGVVAILGNGMINVICAVAIFSIPAFARLV 180 Query: 181 RGNTLSLKQLTYIEAVRSIGANDMTIILRHIFPGTISSVVVYFTMRIGTSIITAASLSFL 240 RGNTL LKQLTYIEA RSIGA+D TII+RHI PGTISSVVVYFTMRIGTSIITAASLSFL Sbjct: 181 RGNTLMLKQLTYIEAARSIGASDWTIIVRHILPGTISSVVVYFTMRIGTSIITAASLSFL 240 Query: 241 GLGAQPPTPEWGAMLNEARADMMTAPHIAIFPSLAIFLTVLAFNLLGDGLRDALDPKLDQ 300 GLGAQPPTPEWGAMLNEARADM+TAPHIA+FPSLAIFLTVLAFNLLGDGLRDALDPKLD+ Sbjct: 241 GLGAQPPTPEWGAMLNEARADMVTAPHIALFPSLAIFLTVLAFNLLGDGLRDALDPKLDR 300