BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0017.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777824.1| L-rhamnose isomerase [Herbaspirillum seroped... 764 0.0 ref|XP_002535078.1| conserved hypothetical protein [Ricinus comm... 619 e-175 ref|ZP_03520974.1| putative sugar isomerase protein [Rhizobium e... 590 e-166 ref|YP_002278079.1| L-rhamnose catabolism isomerase [Rhizobium l... 588 e-166 gb|AEH77545.1| putative sugar isomerase [Sinorhizobium meliloti ... 588 e-166 >ref|YP_003777824.1| L-rhamnose isomerase [Herbaspirillum seropedicae SmR1] gb|ADJ65916.1| L-rhamnose isomerase protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/431 (83%), Positives = 391/431 (90%) Query: 1 MTYLISDDFVGQQNARALAQLQADYDALGGMLQRRGGDIEALTAQAAAFAVALPSWGVGT 60 M+Y I F+ +QNARA QLQ+DY+AL G+L RRG DIEALT QA AFAVALPSWGVGT Sbjct: 1 MSYRIDPQFIAEQNARAHQQLQSDYEALAGVLSRRGCDIEALTGQAQAFAVALPSWGVGT 60 Query: 61 GGTRFARFPGVGEPRNVFEKIDDCATINQLTRATPGVSLHFPWDRTTDPRALKEIAHQRG 120 GGTRFARFPG GEPRNVF+KIDDC TI+QLTR TPGVSLHFPWDRTTD RAL+E A Q G Sbjct: 61 GGTRFARFPGQGEPRNVFDKIDDCGTIHQLTRVTPGVSLHFPWDRTTDARALREAATQHG 120 Query: 121 LHFDSVNSNTFQNAPGQPHSYKYGSLTAQDPAVRAQAVAHNIDCIELGNTLGSKGLTVWL 180 LHFD+VNSNTFQ+A GQ HSYK+GSLTA DP VRAQAVAHNIDCIELG+ LGSKGLTVW+ Sbjct: 121 LHFDAVNSNTFQDAAGQAHSYKFGSLTALDPEVRAQAVAHNIDCIELGHALGSKGLTVWI 180 Query: 181 GDGANFPGQHNLRGALERYLESMRSVYAALPSDWLMYIEHKLFEPAFYATTIADWGTSFA 240 GDGANFPGQ NLRGALERYLESMR++YAALP+DWL+YIEHKLFEPAFYATTIADWGTSFA Sbjct: 181 GDGANFPGQSNLRGALERYLESMRAIYAALPADWLVYIEHKLFEPAFYATTIADWGTSFA 240 Query: 241 CATELGPQAKCLVDLGHHAPNTNIEMIVARLTQFGKLGGFHFNDSKYGDDDLDSGSINPF 300 CATELGP+AKCLVDLGHHAPNTNIEMIVARL QFGKLGGFHFNDSKYGDDDLDSGSINPF Sbjct: 241 CATELGPKAKCLVDLGHHAPNTNIEMIVARLAQFGKLGGFHFNDSKYGDDDLDSGSINPF 300 Query: 301 QLFLIFNELRDGAVREGENFKPAYMLDQSHNVTDPVESLMSSAVEVQRAYIQAALIDADA 360 QLFL+FNELRD A R+G+ F+PAYMLDQSHNVTDP+ESLM+SAVEVQRAY+QAAL+D A Sbjct: 301 QLFLVFNELRDAAQRDGQAFRPAYMLDQSHNVTDPIESLMTSAVEVQRAYLQAALVDTQA 360 Query: 361 LDHHQKNNDALMAAQTLKQAFRTDVGPILAMARMRAGGAIDPVACYRSSGYRDHKREERP 420 L HHQKNNDALMAAQTLKQAFRTDV ILAMAR R+GGAIDPVA YR+S YRDHKREERP Sbjct: 361 LSHHQKNNDALMAAQTLKQAFRTDVSAILAMARYRSGGAIDPVALYRASAYRDHKREERP 420 Query: 421 PVSGASGSGIV 431 V+G S SGIV Sbjct: 421 VVAGRSSSGIV 431 >ref|XP_002535078.1| conserved hypothetical protein [Ricinus communis] gb|EEF27303.1| conserved hypothetical protein [Ricinus communis] Length = 380 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 295/380 (77%), Positives = 325/380 (85%) Query: 1 MTYLISDDFVGQQNARALAQLQADYDALGGMLQRRGGDIEALTAQAAAFAVALPSWGVGT 60 MT LI V NA+ +QL+ADY+ALGGML RRG DIEALTA A FAVA+PSWGVGT Sbjct: 1 MTTLIDAGLVADHNAKLASQLEADYEALGGMLARRGQDIEALTALAQRFAVAVPSWGVGT 60 Query: 61 GGTRFARFPGVGEPRNVFEKIDDCATINQLTRATPGVSLHFPWDRTTDPRALKEIAHQRG 120 GGTRFARFPG GEPRNVFEK+DDCA INQLTRATP VS HFPWD+ TD + L++ A G Sbjct: 61 GGTRFARFPGRGEPRNVFEKLDDCAVINQLTRATPAVSPHFPWDKPTDAKELRQKADDLG 120 Query: 121 LHFDSVNSNTFQNAPGQPHSYKYGSLTAQDPAVRAQAVAHNIDCIELGNTLGSKGLTVWL 180 L FD+VNSNTFQ+ GQ H+YKYGSLTA A RAQAV HNI+CIELG LGSK LTVW+ Sbjct: 121 LAFDAVNSNTFQDQQGQEHTYKYGSLTATSSATRAQAVKHNIECIELGRELGSKALTVWV 180 Query: 181 GDGANFPGQHNLRGALERYLESMRSVYAALPSDWLMYIEHKLFEPAFYATTIADWGTSFA 240 GDGANFPGQHNLRGALERYL+SMR +YAALP DW +++EHKLFEPAFYATTIADWGTSFA Sbjct: 181 GDGANFPGQHNLRGALERYLDSMREIYAALPDDWNVFLEHKLFEPAFYATTIADWGTSFA 240 Query: 241 CATELGPQAKCLVDLGHHAPNTNIEMIVARLTQFGKLGGFHFNDSKYGDDDLDSGSINPF 300 CAT LGP+AKCLVDLGHHAPNTNIEMIVARL QFGKLGGFHFNDSKYGDDDLDSGSINPF Sbjct: 241 CATALGPKAKCLVDLGHHAPNTNIEMIVARLAQFGKLGGFHFNDSKYGDDDLDSGSINPF 300 Query: 301 QLFLIFNELRDGAVREGENFKPAYMLDQSHNVTDPVESLMSSAVEVQRAYIQAALIDADA 360 QLFL+FNEL D A+REG FKPAYMLDQSHNVTDPVESLM+SAVEVQRAY+QAAL+D Sbjct: 301 QLFLVFNELADAALREGPAFKPAYMLDQSHNVTDPVESLMNSAVEVQRAYVQAALVDRAQ 360 Query: 361 LDHHQKNNDALMAAQTLKQA 380 L Q++ND L++AQ LKQA Sbjct: 361 LAGLQESNDVLLSAQALKQA 380 >ref|ZP_03520974.1| putative sugar isomerase protein [Rhizobium etli GR56] Length = 430 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/429 (64%), Positives = 338/429 (78%), Gaps = 2/429 (0%) Query: 3 YLISDDFVGQQNARALAQLQADYDALGGMLQRRGGDIEALTAQAAAFAVALPSWGVGTGG 62 + I+ D V +N + +A L+ADY ALG L RRG DIEA+T + A F VA+PSWGVGTGG Sbjct: 4 FRIAPDLVASENEKRVAALKADYGALGATLDRRGVDIEAITRKVAEFFVAVPSWGVGTGG 63 Query: 63 TRFARFPGVGEPRNVFEKIDDCATINQLTRATPGVSLHFPWDRTTDPRALKEIAHQRGLH 122 TRFARFPG GEPR +F+K+DDCA INQLT+ATP VSLH PWD+ D R LK GL Sbjct: 64 TRFARFPGTGEPRGIFDKLDDCAVINQLTQATPNVSLHIPWDKA-DARELKAKGDALGLG 122 Query: 123 FDSVNSNTFQNAPGQPHSYKYGSLTAQDPAVRAQAVAHNIDCIELGNTLGSKGLTVWLGD 182 FD++NSNTF +APGQ HSYKYGSL+ D A RAQAV HN++CIE+G +GSK LTVW+GD Sbjct: 123 FDAMNSNTFSDAPGQAHSYKYGSLSHTDAATRAQAVEHNLECIEIGKAIGSKALTVWVGD 182 Query: 183 GANFPGQHNLRGALERYLESMRSVYAALPSDWLMYIEHKLFEPAFYATTIADWGTSFACA 242 G+NFPGQ N A ERYL SM +Y ALP DW ++ EHK++EPAFY+T + DWGT++ A Sbjct: 183 GSNFPGQSNFTKAFERYLASMADIYKALPDDWKLFTEHKMYEPAFYSTIVQDWGTNYLIA 242 Query: 243 TELGPQAKCLVDLGHHAPNTNIEMIVARLTQFGKLGGFHFNDSKYGDDDLDSGSINPFQL 302 LGP+A CLVDLGHHAPNTNIEMIVARL QFGKLGGFHFNDSKYGDDDLD+G+I+P++L Sbjct: 243 QTLGPKAHCLVDLGHHAPNTNIEMIVARLIQFGKLGGFHFNDSKYGDDDLDAGAIDPYRL 302 Query: 303 FLIFNELRDGAVREGENFKPAYMLDQSHNVTDPVESLMSSAVEVQRAYIQAALIDADALD 362 FL+FNEL D R +F PA+M+DQSHNVTDP+ESL++SA E++RAY QA ++D AL+ Sbjct: 303 FLVFNELVDAEQRGVNDFNPAHMIDQSHNVTDPIESLINSANEIRRAYAQALIVDRKALE 362 Query: 363 HHQKNNDALMAAQTLKQAFRTDVGPILAMARMRAGGAIDPVACYRSSGYRDHKREERPPV 422 +Q++NDALMA++TLK+A+R DV PILA AR RAGGAIDP+A YR+SGYR+ ER P Sbjct: 363 GYQQDNDALMASETLKRAYRADVEPILAEARRRAGGAIDPIAAYRASGYRNKVAAER-PA 421 Query: 423 SGASGSGIV 431 S A G GI+ Sbjct: 422 SVAGGGGII 430 >ref|YP_002278079.1| L-rhamnose catabolism isomerase [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58979.1| L-rhamnose catabolism isomerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 430 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/429 (64%), Positives = 336/429 (78%), Gaps = 2/429 (0%) Query: 3 YLISDDFVGQQNARALAQLQADYDALGGMLQRRGGDIEALTAQAAAFAVALPSWGVGTGG 62 + I+ D V +N + L+ADY+ALG L RRG DIEA+T + A F VA+PSWGVGTGG Sbjct: 4 FRIAQDLVATENDKRATALKADYEALGANLDRRGVDIEAITRKVAEFFVAVPSWGVGTGG 63 Query: 63 TRFARFPGVGEPRNVFEKIDDCATINQLTRATPGVSLHFPWDRTTDPRALKEIAHQRGLH 122 TRFARFPG GEPR +F+K+DDCA INQLT+ATP VSLH PWD+ D + LK GL Sbjct: 64 TRFARFPGTGEPRGIFDKLDDCAVINQLTQATPNVSLHIPWDKA-DTKELKARGDALGLG 122 Query: 123 FDSVNSNTFQNAPGQPHSYKYGSLTAQDPAVRAQAVAHNIDCIELGNTLGSKGLTVWLGD 182 FD++NSNTF +APGQ HSYKYGSL+ D A RAQAV HN++CIE+G LGSK LTVW+GD Sbjct: 123 FDAMNSNTFSDAPGQAHSYKYGSLSHTDAATRAQAVEHNLECIEIGKALGSKALTVWIGD 182 Query: 183 GANFPGQHNLRGALERYLESMRSVYAALPSDWLMYIEHKLFEPAFYATTIADWGTSFACA 242 G+NFPGQ N A ERYL SM +Y ALP DW ++ EHK++EPAFY+T + DWGT++ A Sbjct: 183 GSNFPGQSNFTKAFERYLASMADIYKALPDDWKLFSEHKMYEPAFYSTIVQDWGTNYLIA 242 Query: 243 TELGPQAKCLVDLGHHAPNTNIEMIVARLTQFGKLGGFHFNDSKYGDDDLDSGSINPFQL 302 LGP+A CLVDLGHHAPNTNIEMIVARL QFGKLGGFHFNDSKYGDDDLD+G+I+P++L Sbjct: 243 QTLGPKAYCLVDLGHHAPNTNIEMIVARLIQFGKLGGFHFNDSKYGDDDLDAGAIDPYRL 302 Query: 303 FLIFNELRDGAVREGENFKPAYMLDQSHNVTDPVESLMSSAVEVQRAYIQAALIDADALD 362 FL+FNEL D R +F PA+M+DQSHNVTDP+ESL++SA E++RAY QA ++D ALD Sbjct: 303 FLVFNELVDAEQRGVNDFDPAHMIDQSHNVTDPIESLINSANEIRRAYAQALIVDRKALD 362 Query: 363 HHQKNNDALMAAQTLKQAFRTDVGPILAMARMRAGGAIDPVACYRSSGYRDHKREERPPV 422 +Q++NDALMA++TLK+A+R DV PILA AR RAGGAIDP+A YR+SGYR ER P Sbjct: 363 GYQQDNDALMASETLKRAYRADVEPILAEARRRAGGAIDPIAAYRASGYRKKIAAER-PA 421 Query: 423 SGASGSGIV 431 S A G GI+ Sbjct: 422 STAGGGGII 430 >gb|AEH77545.1| putative sugar isomerase [Sinorhizobium meliloti SM11] Length = 430 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 274/420 (65%), Positives = 329/420 (78%) Query: 1 MTYLISDDFVGQQNARALAQLQADYDALGGMLQRRGGDIEALTAQAAAFAVALPSWGVGT 60 MT +IS V +NA L DY++LG L RRG DI+A+ A+ AA+ VA+PSWGVGT Sbjct: 1 MTLMISKSAVDAENASRRDALTRDYESLGDRLARRGIDIDAVKAKVAAYGVAVPSWGVGT 60 Query: 61 GGTRFARFPGVGEPRNVFEKIDDCATINQLTRATPGVSLHFPWDRTTDPRALKEIAHQRG 120 GGTRFARFPG GEPRN+F+K++DCA I QLTRATP VSLH PWD+ +D ALKE G Sbjct: 61 GGTRFARFPGPGEPRNIFDKLEDCAVIQQLTRATPAVSLHIPWDKVSDLGALKEKGSALG 120 Query: 121 LHFDSVNSNTFQNAPGQPHSYKYGSLTAQDPAVRAQAVAHNIDCIELGNTLGSKGLTVWL 180 L FD++NSNTF +APGQ HSYK+GSL+ D A R QA+ HN++C+E+G LGSK LTVW+ Sbjct: 121 LSFDAMNSNTFSDAPGQAHSYKFGSLSHTDSATRRQAIEHNLECVEIGKALGSKALTVWV 180 Query: 181 GDGANFPGQHNLRGALERYLESMRSVYAALPSDWLMYIEHKLFEPAFYATTIADWGTSFA 240 GDG+NFPGQ N A ERYL+SM++VYAALP DW ++ EHK+FEPAFY+T + DWGT++ Sbjct: 181 GDGSNFPGQSNFTRAFERYLDSMKAVYAALPDDWRVFTEHKMFEPAFYSTVVQDWGTNYL 240 Query: 241 CATELGPQAKCLVDLGHHAPNTNIEMIVARLTQFGKLGGFHFNDSKYGDDDLDSGSINPF 300 A ELGP+A CLVDLGHHAPN NIEMIVARL QF KLGGFHFNDSKYGDDDLD+GSI+P+ Sbjct: 241 IAQELGPKAFCLVDLGHHAPNVNIEMIVARLIQFKKLGGFHFNDSKYGDDDLDTGSIDPY 300 Query: 301 QLFLIFNELRDGAVREGENFKPAYMLDQSHNVTDPVESLMSSAVEVQRAYIQAALIDADA 360 +LFL+FNEL D R F PA+MLDQSHNVTDP+ESLM+SA+EV RAY QA ++D A Sbjct: 301 RLFLVFNELVDAETRAANGFDPAHMLDQSHNVTDPIESLMTSAMEVGRAYAQALIVDRKA 360 Query: 361 LDHHQKNNDALMAAQTLKQAFRTDVGPILAMARMRAGGAIDPVACYRSSGYRDHKREERP 420 L +Q+ NDALMA++TLK AFRTDV PILAMAR+ GAI PVA YR+SGYR ERP Sbjct: 361 LAGYQEENDALMASETLKTAFRTDVEPILAMARLENDGAIAPVAAYRASGYRARVAAERP 420