BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0012.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777821.1| sugar ABC transporter periplasmic protein [H... 591 e-167 ref|YP_001791243.1| rhamnose ABC transporter periplasmic rhamnos... 459 e-127 emb|CBA30992.1| hypothetical protein Csp_C26320 [Curvibacter put... 445 e-123 ref|YP_996885.1| rhamnose ABC transporter periplasmic rhamnose-b... 428 e-118 ref|ZP_08871894.1| rhamnose ABC transporter periplasmic rhamnose... 421 e-116 >ref|YP_003777821.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65913.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/308 (93%), Positives = 305/308 (99%) Query: 38 DKVRIAMVVKSLGNGFFDAAHEGAKEAARQLGDVDIIYTGPTTPTAEGQIEIVNSLISQK 97 +KVRIAMVVKSLGNGFFDAAHEGAKEAAR+LGDV++IYTGPTTPTAEGQIEIVNSLISQK Sbjct: 37 EKVRIAMVVKSLGNGFFDAAHEGAKEAARELGDVEVIYTGPTTPTAEGQIEIVNSLISQK 96 Query: 98 VDAIVISANDANALIPITKKAMQRGIKVLSFDSGIAKGGRLMQLNPSNAELIGVKQIQMA 157 VDAIVISANDANAL+PITK+AMQRG+KVLSFDSGIAKGGRLMQLNPSNAELIG+KQIQMA Sbjct: 97 VDAIVISANDANALVPITKRAMQRGVKVLSFDSGIAKGGRLMQLNPSNAELIGLKQIQMA 156 Query: 158 SDAIGGAGEVAILSATAQATNQNIWIAEMKKALARPEFSKIKLIATVYGDDQSDKSYREA 217 ++AIGGAG+VAILSATAQATNQNIWI EMKKALARPEFS++KL+ATVYGDDQSDKSYREA Sbjct: 157 AEAIGGAGDVAILSATAQATNQNIWIGEMKKALARPEFSRMKLVATVYGDDQSDKSYREA 216 Query: 218 IGLLRSNPNLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSGAVKSF 277 IGLLRS+P LKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSGAVKSF Sbjct: 217 IGLLRSHPGLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSGAVKSF 276 Query: 278 AIWNPIDLGYAATYAAYQFVKGKAQGKDGESISVGRMGSIKLDASGEAALAPPFTYDAGN 337 AIWNPIDLGYAATYAAYQFVKGKAQGK+GESI+VGRMGSIKLDA+GEAALAPPFTYDA N Sbjct: 277 AIWNPIDLGYAATYAAYQFVKGKAQGKEGESIAVGRMGSIKLDAAGEAALAPPFTYDASN 336 Query: 338 VDKFAKIF 345 VDKFAKIF Sbjct: 337 VDKFAKIF 344 >ref|YP_001791243.1| rhamnose ABC transporter periplasmic rhamnose-binding protein [Leptothrix cholodnii SP-6] gb|ACB34478.1| rhamnose ABC transporter, periplasmic rhamnose-binding protein [Leptothrix cholodnii SP-6] Length = 330 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/313 (71%), Positives = 265/313 (84%), Gaps = 2/313 (0%) Query: 33 PAAAADKVRIAMVVKSLGNGFFDAAHEGAKEAARQLGDVDIIYTGPTTPTAEGQIEIVNS 92 PA AADK IA+VVKSLGNGFFDAAH+GA EAA++L DV+IIYTGP TAEGQIEI+NS Sbjct: 20 PAMAADK--IALVVKSLGNGFFDAAHQGALEAAKELKDVEIIYTGPAKATAEGQIEIINS 77 Query: 93 LISQKVDAIVISANDANALIPITKKAMQRGIKVLSFDSGIAKGGRLMQLNPSNAELIGVK 152 LI+Q V AIVISAND +AL+P KKAM RGIKV+SFDSG+ K GRLMQLNPSN+ LIG K Sbjct: 78 LIAQNVKAIVISANDPDALVPSLKKAMSRGIKVISFDSGVKKEGRLMQLNPSNSALIGEK 137 Query: 153 QIQMASDAIGGAGEVAILSATAQATNQNIWIAEMKKALARPEFSKIKLIATVYGDDQSDK 212 ++M+ +G GE+A+LSATAQATNQNIWI EMKK LA+P +S +KL+ VYGDDQ+DK Sbjct: 138 LVKMSEQVVGKTGEIAVLSATAQATNQNIWIGEMKKVLAQPGYSGLKLVNVVYGDDQTDK 197 Query: 213 SYREAIGLLRSNPNLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSG 272 SYREA GL +S PNLKAI+APTTVGI AA KAV DEK VG+++VTGLGLPSEMAGHVKSG Sbjct: 198 SYREAQGLFKSYPNLKAIVAPTTVGIAAAAKAVQDEKKVGQIFVTGLGLPSEMAGHVKSG 257 Query: 273 AVKSFAIWNPIDLGYAATYAAYQFVKGKAQGKDGESISVGRMGSIKLDASGEAALAPPFT 332 AVKSFAIWNPIDLGY++ + A+ F+KGKA+G GE IS+GR+G+ LDA+ E A+A PFT Sbjct: 258 AVKSFAIWNPIDLGYSSIHIAHAFMKGKAKGTAGEKISLGRVGTTTLDANLEGAMAEPFT 317 Query: 333 YDAGNVDKFAKIF 345 YDAGNV++FAKIF Sbjct: 318 YDAGNVEQFAKIF 330 >emb|CBA30992.1| hypothetical protein Csp_C26320 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 330 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/326 (70%), Positives = 272/326 (83%), Gaps = 4/326 (1%) Query: 20 LTLVLSAAIGFSLPAAAADKVRIAMVVKSLGNGFFDAAHEGAKEAARQLGDVDIIYTGPT 79 LT+ LSAA+ PA AADK IA+VVKSLGNGFFDAA++GA+EAA++L +V+IIYTGP Sbjct: 9 LTIALSAAL--VSPAFAADK--IALVVKSLGNGFFDAANQGAQEAAKELKNVEIIYTGPA 64 Query: 80 TPTAEGQIEIVNSLISQKVDAIVISANDANALIPITKKAMQRGIKVLSFDSGIAKGGRLM 139 TAEGQIEIVNSLI+QKV AIVISAND +AL P+ K+AM RGIKVLSFDSG+ K GR+M Sbjct: 65 KATAEGQIEIVNSLIAQKVSAIVISANDPDALAPVLKRAMDRGIKVLSFDSGVRKDGRMM 124 Query: 140 QLNPSNAELIGVKQIQMASDAIGGAGEVAILSATAQATNQNIWIAEMKKALARPEFSKIK 199 LNPS+ LIG K ++M +DAIG GEVA+LSATAQATNQNIWI E KK LA+P + +K Sbjct: 125 HLNPSSNPLIGEKLVKMTADAIGSTGEVAVLSATAQATNQNIWIEEAKKVLAQPAYKGLK 184 Query: 200 LIATVYGDDQSDKSYREAIGLLRSNPNLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGL 259 L++ VYGDDQ+DKSYREA GL +S PNLKAIIAPTTVG+ AA KAV DEK VG +YVTGL Sbjct: 185 LVSVVYGDDQTDKSYREAQGLFKSYPNLKAIIAPTTVGVAAAAKAVQDEKKVGSIYVTGL 244 Query: 260 GLPSEMAGHVKSGAVKSFAIWNPIDLGYAATYAAYQFVKGKAQGKDGESISVGRMGSIKL 319 GLPSEMAGHVKSGAVKSFAIWNPIDLGY++ AA QF+ GK GK G+ +S+GR+G++ L Sbjct: 245 GLPSEMAGHVKSGAVKSFAIWNPIDLGYSSIMAASQFISGKVTGKAGDKVSLGRVGTVTL 304 Query: 320 DASGEAALAPPFTYDAGNVDKFAKIF 345 DA+GEAA++ PFTYDA NV+KFAK F Sbjct: 305 DANGEAAMSEPFTYDASNVEKFAKFF 330 >ref|YP_996885.1| rhamnose ABC transporter periplasmic rhamnose-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM57867.1| rhamnose ABC transporter, periplasmic rhamnose-binding protein [Verminephrobacter eiseniae EF01-2] Length = 341 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/305 (67%), Positives = 253/305 (82%) Query: 41 RIAMVVKSLGNGFFDAAHEGAKEAARQLGDVDIIYTGPTTPTAEGQIEIVNSLISQKVDA 100 +IA+VVKSLGNGFFDA ++GA+EAA+++ +++IIYTGP TAEGQIEI+N+LISQKV A Sbjct: 37 KIAVVVKSLGNGFFDAVNQGAQEAAKEIKNIEIIYTGPAKSTAEGQIEIINALISQKVAA 96 Query: 101 IVISANDANALIPITKKAMQRGIKVLSFDSGIAKGGRLMQLNPSNAELIGVKQIQMASDA 160 IVISAND +AL P K+AM RGIKVLSFDSG+ K GR+M L+PS+ LIG K +Q+ A Sbjct: 97 IVISANDPDALAPSLKRAMGRGIKVLSFDSGVRKDGRMMHLSPSSNALIGEKLVQLTQQA 156 Query: 161 IGGAGEVAILSATAQATNQNIWIAEMKKALARPEFSKIKLIATVYGDDQSDKSYREAIGL 220 IG +GE+A++S+TAQATNQNIWI E++K LARP + +KL++ YGDDQ DKSYRE GL Sbjct: 157 IGDSGEIAVVSSTAQATNQNIWIEEIRKVLARPAYKGLKLVSVAYGDDQIDKSYRETQGL 216 Query: 221 LRSNPNLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSGAVKSFAIW 280 +S PNLKAIIAPTT+G+ AA KAV DEK VG VYVTGLGLPSEMAGHVK+GAVKSFAIW Sbjct: 217 FKSYPNLKAIIAPTTIGVAAAAKAVQDEKKVGSVYVTGLGLPSEMAGHVKNGAVKSFAIW 276 Query: 281 NPIDLGYAATYAAYQFVKGKAQGKDGESISVGRMGSIKLDASGEAALAPPFTYDAGNVDK 340 NPIDLGY++ AA Q + GK GK G+ +S+GR+GS+ LDA+ EAA+A PFTYDA NV+K Sbjct: 277 NPIDLGYSSIQAASQLIAGKFTGKPGDKVSLGRVGSVVLDANSEAAMAEPFTYDASNVEK 336 Query: 341 FAKIF 345 FAKIF Sbjct: 337 FAKIF 341 >ref|ZP_08871894.1| rhamnose ABC transporter periplasmic rhamnose-binding protein [Verminephrobacter sp. At4] Length = 331 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/327 (68%), Positives = 266/327 (81%), Gaps = 4/327 (1%) Query: 21 TLVLSAAIGFSL--PAAAADKVRIAMVVKSLGNGFFDAAHEGAKEAARQLGDVDIIYTGP 78 T +L A G +L P AADK IA+VVKSLGNGFFDA H+GA+EAA++LG+V+IIYTGP Sbjct: 7 TALLGAVFGAALASPVLAADK--IAVVVKSLGNGFFDAVHQGAQEAAKELGNVEIIYTGP 64 Query: 79 TTPTAEGQIEIVNSLISQKVDAIVISANDANALIPITKKAMQRGIKVLSFDSGIAKGGRL 138 TAEGQIEI+N+LISQKV AIVISAND +AL+P K+A RGIKVLSFDSG+ K GR+ Sbjct: 65 AQSTAEGQIEIINALISQKVAAIVISANDPDALVPSLKRAKDRGIKVLSFDSGVRKDGRM 124 Query: 139 MQLNPSNAELIGVKQIQMASDAIGGAGEVAILSATAQATNQNIWIAEMKKALARPEFSKI 198 M LNPS LIG K +++ AIG +GE+AILSATAQA NQN+WIAE KK LARPE+ + Sbjct: 125 MHLNPSGNALIGEKLVKLTQQAIGDSGEIAILSATAQAMNQNVWIAEAKKVLARPEYQGL 184 Query: 199 KLIATVYGDDQSDKSYREAIGLLRSNPNLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTG 258 KL+ VYGD+QSDKSYREA GL +S+PNLKAIIAPTT+ I AA KAV DE +G VYVTG Sbjct: 185 KLVGVVYGDNQSDKSYREAQGLFKSHPNLKAIIAPTTIAIAAAAKAVQDEGKIGSVYVTG 244 Query: 259 LGLPSEMAGHVKSGAVKSFAIWNPIDLGYAATYAAYQFVKGKAQGKDGESISVGRMGSIK 318 LGLPSEMAGHVKSGAVKSFAIWNPIDLGY++ +AA QF+ GK GK GE +S+GR+G++ Sbjct: 245 LGLPSEMAGHVKSGAVKSFAIWNPIDLGYSSVHAASQFISGKLSGKPGERVSLGRVGTVT 304 Query: 319 LDASGEAALAPPFTYDAGNVDKFAKIF 345 L+A+GEA ++ PFTYDA NV KFAKIF Sbjct: 305 LNANGEADMSEPFTYDARNVGKFAKIF 331