BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0008.p (469 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777816.1| L-fuculokinase [Herbaspirillum seropedicae S... 571 e-160 ref|ZP_03560430.1| L-fuculokinase [Glaciecola sp. HTCC2999] 374 e-101 ref|XP_002537685.1| conserved hypothetical protein [Ricinus comm... 359 7e-97 ref|YP_004480451.1| hypothetical protein Mar181_0468 [Marinomona... 351 1e-94 ref|NP_106313.1| L-fuculokinase [Mesorhizobium loti MAFF303099] ... 339 6e-91 >ref|YP_003777816.1| L-fuculokinase [Herbaspirillum seropedicae SmR1] gb|ADJ65908.1| L-fuculokinase protein [Herbaspirillum seropedicae SmR1] Length = 478 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 289/455 (63%), Positives = 330/455 (72%), Gaps = 2/455 (0%) Query: 8 FDIGKTNIKLSLVDAQGHELAVRRRANEVVQGGFYPHHDVDAIEAWLLSTLSELAQQAYI 67 FDIGKTNIKL+LVD G ELAVRRR N+ Q G YPHHDV AIEAWLL L+ LA+Q I Sbjct: 23 FDIGKTNIKLTLVDEHGQELAVRRRPNQPRQDGPYPHHDVAAIEAWLLENLAALARQWRI 82 Query: 68 SAIVPVTHGATAALVDEHGLVLPIADYEQSFRTSSPSPEYEALRPAFDHTFSPSLGLGLN 127 AIVPVTHGATAALVDE GLVLP+ADYE F YE+LRP F + SP LG+GLN Sbjct: 83 RAIVPVTHGATAALVDEAGLVLPVADYEHDFALPPAHRPYESLRPPFAQSASPLLGMGLN 142 Query: 128 LGRQLYWLQQTYPETFGRAHRLLMYPQYWAWRLCGVAAAEVTSLGCHTDLWQPSDGTYSS 187 LGRQLYW Q YP+ F RA LLMYPQYW+WRL GVAA E++SLGCHTDLWQP YSS Sbjct: 143 LGRQLYWQSQRYPDAFARARYLLMYPQYWSWRLSGVAAGELSSLGCHTDLWQPGQQCYSS 202 Query: 188 IVASCGWTQLMPSLHPAWAELGCLHPHLVRQTGLPSDCRILCGIHDSNASLLRYLDRSDN 247 ++A C WT LMP L AW LG L P L ++TGLP+DC +LCG+HDSNASLLRYL + Sbjct: 203 LLAQCNWTPLMPPLRAAWERLGPLRPELAQRTGLPADCAVLCGVHDSNASLLRYLRGTGG 262 Query: 248 GPRVVLSTGTWLIAAALDGGLDCLREQSDMLANVNARGEAVACMRFMGGREFAELAGSTP 307 GPR+VLS+GTWLIAAALDG + LRE++DMLANVN G VACMRFMGGREFA++AG Sbjct: 263 GPRIVLSSGTWLIAAALDGCVSGLREEADMLANVNVLGAPVACMRFMGGREFAQIAGDD- 321 Query: 308 HVCNEADLQALVDSQSMALPCFSGCGGPFAGRQGHISGSVPETAAGRYALATLYCVLMTE 367 C+ LQAL+D+Q ALPCFS CGGPFAGR+G I G P+ RYALATLYC LMT Sbjct: 322 LPCSAEQLQALIDAQVFALPCFSECGGPFAGRRGSIVGQAPQQPGSRYALATLYCALMTA 381 Query: 368 YCLEHLQASGPVVVEGSFTANPYFAPLLAATSGGREVFCSEDGSGTTMGGWILRHWREHP 427 YCL+ L A G +VVEGSFTANP+FA LLAA R V+ S D SGTT+GGW+L W P Sbjct: 382 YCLDALDAPGEIVVEGSFTANPHFAALLAALV-SRTVYRSSDASGTTLGGWLLDRWERAP 440 Query: 428 HGAALPAPKAVAPLRLRGWESYRQAWRHAVTPLLR 462 A LPA PL LRG +YR+ W + L R Sbjct: 441 ETATLPALLPAEPLALRGLAAYREDWLRKLGELER 475 >ref|ZP_03560430.1| L-fuculokinase [Glaciecola sp. HTCC2999] Length = 471 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/459 (43%), Positives = 266/459 (57%), Gaps = 17/459 (3%) Query: 7 VFDIGKTNIKLSLVDAQGHELAVRRRANEVVQGGFYPHHDVDAIEAWLLSTLSELAQQAY 66 + DIGKT++KL ++++ + + +N V YP DV AI WL S+++ + + Sbjct: 11 IIDIGKTHVKLLVLNSCYEAVHSTQMSNTPVLSDIYPCADVSAIWKWLCSSITTITPKYS 70 Query: 67 ISAIVPVTHGATAALVDEH-----GLVLPIADYEQSFRTSSPSPEYEALRPAFDHTFSPS 121 I+ + THGATAAL+D+H GLVLPI DYE + + S YE RP F TFSPS Sbjct: 71 ITKMTITTHGATAALIDKHNASPDGLVLPILDYECT-KPFDDSISYETDRPDFVDTFSPS 129 Query: 122 LGLGLNLGRQLYWLQQTYPETFGRAHRLLMYPQYWAWRLCGVAAAEVTSLGCHTDLWQPS 181 L GLNLGRQLYWL++++PE F +LMYPQYWAWR G + +E+TSLGCHTDLW Sbjct: 130 LPGGLNLGRQLYWLKESFPEAFANTTDILMYPQYWAWRFTGESVSEITSLGCHTDLWSIK 189 Query: 182 DGTYSSIVASCGWTQLMPSLHPAWAELGCLHPHLVRQTGLPSDCRILCGIHDSNASLLRY 241 D TYS +V L P L PAW ++G + L Q GLP C G+HDSNAS LRY Sbjct: 190 DNTYSELVKQLDCIDLFPKLKPAWHKVGDIKDDLCHQLGLPKGCEFFSGLHDSNASFLRY 249 Query: 242 LDRSDNGPRVVLSTGTWLIAAALDGGLDCLREQSDMLANVNARGEAVACMRFMGGREF-- 299 +N P V+STGTW I A L L+ DMLAN++A G +AC RFMGGREF Sbjct: 250 RIAQENKPFTVISTGTWTILMASQVSLSNLKSDKDMLANIDAFGSPIACARFMGGREFEA 309 Query: 300 -AELAGS-TPHVCNEADLQALVDSQSMALPCFSGCGGPFAGRQGHISGSVPETAAGRYAL 357 E AGS N+ D+Q +++++ ALP FS GPF G Q + G V E + A+ Sbjct: 310 ICEQAGSWLGEQFNQNDIQNVINNEVFALPDFSDGSGPFGGAQSKLIGPVNEVSG--IAI 367 Query: 358 ATLYCVLMTEYCLEHLQASGPVVVEGSFTANPYFAPLLAATSGGREVFCSEDGSGTTMGG 417 ATLYC LM +Y L+ L A G V +EG+F NP ++ + +EV SED +GT +G Sbjct: 368 ATLYCALMIDYQLDMLGAHGDVYIEGAFLKNPLLCSIVNSLRLNQEVMLSEDSTGTVLGA 427 Query: 418 WILRHW-REHPHGAALPAPKAVAPLRLRGWESYRQAWRH 455 L W E P PA ++L G + ++Q WR Sbjct: 428 AYLTQWDTEKPILTVSPA----TVIQLEGLDEFKQKWRE 462 >ref|XP_002537685.1| conserved hypothetical protein [Ricinus communis] gb|EEF24697.1| conserved hypothetical protein [Ricinus communis] Length = 301 Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 188/307 (61%), Positives = 216/307 (70%), Gaps = 7/307 (2%) Query: 151 MYPQYWAWRLCGVAAAEVTSLGCHTDLWQPSDGTYSSIVASCGWTQLMPSLHPAWAELGC 210 MYPQYWAWRLCGVAA+E TSLGCHTDLW P TYSS+V GWT LMP L PA A LG Sbjct: 1 MYPQYWAWRLCGVAASEATSLGCHTDLWNPRTQTYSSLVGRMGWTDLMPPLAPAHAVLGA 60 Query: 211 LHPHLVRQTGLPSDCRILCGIHDSNASLLRYLDRSDNGPRVVLSTGTWLIAAALDGGLDC 270 L P + TGLP+DC +LCGIHDSNASLLRYL R++ VLSTGTW+IAAA LD Sbjct: 61 LRPEIAATTGLPADCEVLCGIHDSNASLLRYLGRNEG---TVLSTGTWMIAAAFGTALDG 117 Query: 271 LREQSDMLANVNARGEAVACMRFMGGREFAELAGSTPHVCNEADLQALVDSQSMALPCFS 330 LRE++DMLAN NA G VACMRFMGGREF ELAG+ P C ++ L+ ++ALPCF+ Sbjct: 118 LREETDMLANTNALGRPVACMRFMGGREFGELAGAQPVPCGFDAIERLIAQGTLALPCFA 177 Query: 331 GCGGPFAGRQGHISGSVPETAAGRYALATLYCVLMTEYCLEHLQASGPVVVEGSFTANPY 390 GGPFAGR G I G P A RYALATLYCVLMT+YCL+ L A+GP+ VEGSFTANP+ Sbjct: 178 ATGGPFAGRTGSIEGPPPADAQERYALATLYCVLMTDYCLDALGAAGPLAVEGSFTANPW 237 Query: 391 FAPLLAATSGGREVFCSEDGSGTTMGGWILRHWREHPHGAALPAPKAVAPLRLRGWESYR 450 F PLLAA + V S+D SGTT GGW+LRH R+ A A AP +L G YR Sbjct: 238 FGPLLAALRPQQPVSYSDDASGTTCGGWMLRH-RDAAAPGTSTAIAARAPAQLDG---YR 293 Query: 451 QAWRHAV 457 WR A+ Sbjct: 294 ARWRAAL 300 >ref|YP_004480451.1| hypothetical protein Mar181_0468 [Marinomonas posidonica IVIA-Po-181] gb|AEF53532.1| protein of unknown function DUF718 [Marinomonas posidonica IVIA-Po-181] Length = 571 Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 200/461 (43%), Positives = 269/461 (58%), Gaps = 12/461 (2%) Query: 4 ALAVFDIGKTNIKLSLVDAQ-GHELAVRRRANEVVQGGFYPHHDVDAIEAWLLSTLSELA 62 +AV DIGKTNIK+ L+D Q G L + +R NEV+ YPH DV++I W+ +TL+ LA Sbjct: 117 VVAVLDIGKTNIKICLMDGQTGTLLQIEKRVNEVLDKPPYPHVDVESIWQWIKNTLAMLA 176 Query: 63 QQAYISAIVPVTHGATAALVDEHGLVLPIADYEQSFRTSSPSPEYEALRPAFDHTFSPSL 122 Q+ +IS+I THGAT A + L LPI DYE + EY+ALRP F +FSP L Sbjct: 177 QRYFISSIAITTHGATIACMQGDKLALPILDYEYD-GVAEYKDEYDALRPGFSESFSPRL 235 Query: 123 GLGLNLGRQLYWLQQTYPETFGRAHRLLMYPQYWAWRLCGVAAAEVTSLGCHTDLWQPSD 182 GLNLG QL+W Q+ + + F + LL+YPQYW ++L G AAEVTSLGCHTDLW P+ Sbjct: 236 PQGLNLGAQLFWQQKCFTDAFSKVDSLLLYPQYWGYKLSGNKAAEVTSLGCHTDLWNPTS 295 Query: 183 GTYSSIVASCGWTQLMPSLHPAWAELGCLHPHLVRQTGLPSDCRILCGIHDSNASLLRYL 242 +SS W P + + A+LG + P L ++ GLP+ C I GIHDSNASL+ Y+ Sbjct: 296 CQFSSFCEQQTWADYFPDVMESGAKLGTILPDLAKEIGLPASCVIFNGIHDSNASLVPYI 355 Query: 243 DRSDNGPRVVLSTGTWLIAAALDGGLDCLREQSDMLANVNARGEAVACMRFMGGREFAEL 302 + VV S+GTW + A ++G LD L+E DMLANV+A G A +RFMGGRE+ L Sbjct: 356 GQPMEKLTVV-SSGTWTVIATINGSLDSLQESKDMLANVDALGRATPTIRFMGGREWELL 414 Query: 303 AGSTPHVCNEADLQALVDSQSMALPCFSGCGGPFAGRQGHISGSVPE-TAAGRYALATLY 361 + +D+ +++ +ALP FS GGPFA +G I E +AA + ALA +Y Sbjct: 415 RSDSKAAL--SDVSFILEHGILALPAFSKGGGPFAHCEGRIIDRGMELSAAQQSALADVY 472 Query: 362 CVLMTEYCLEHLQASGPVVVEGSFTANPYFAPLLAATSGGREVFCSEDGSGTTMGGWILR 421 LMT+YCL + S V+VEG+F+ N F LLA E++ S D +GT+ G +L Sbjct: 473 VALMTDYCLNLMDTSYTVIVEGAFSNNINFLTLLACMRSQNEIYASRDVTGTSGGAALLS 532 Query: 422 HWREHPHGAALPA--PKAVAPLRLRGWESYRQAWRHAVTPL 460 + G A + PL YRQ WR V L Sbjct: 533 NKSLKLKGRLSLALCDAQIKPL----LNLYRQQWRDLVGEL 569 >ref|NP_106313.1| L-fuculokinase [Mesorhizobium loti MAFF303099] dbj|BAB52099.1| mll5701 [Mesorhizobium loti MAFF303099] Length = 458 Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 198/455 (43%), Positives = 264/455 (58%), Gaps = 9/455 (1%) Query: 5 LAVFDIGKTNIKLSLVD-AQGHELAVRRRANEVVQGGFYPHHDVDAIEAWLLSTLSELAQ 63 +AV DIGKTN K++LVD A E+A+RR AN V+ YPHHDV+++ ++L +L+ L Sbjct: 7 IAVIDIGKTNAKVALVDLATSSEVALRRMANAPVRQAPYPHHDVESLWTFILDSLAGLNC 66 Query: 64 QAYISAIVPVTHGATAALVDEHG-LVLPIADYEQSFRTSSPSPEYEALRPAFDHTFSPSL 122 + I AI THGAT ALVD G LVLP+ DYE + + +Y+A+RP F T +P L Sbjct: 67 EQRIDAISITTHGATGALVDASGELVLPVLDYEFD-GPNGLAADYDAIRPPFAETGTPRL 125 Query: 123 GLGLNLGRQLYWLQQTYPETFGRAHRLLMYPQYWAWRLCGVAAAEVTSLGCHTDLWQPSD 182 LGLNLG Q +W Q+ +P F A +LMYPQYWA RL GVAA EVTSLGCHTDLW P Sbjct: 126 PLGLNLGAQFFWQQKRFPAAFAHATAILMYPQYWALRLTGVAANEVTSLGCHTDLWNPWT 185 Query: 183 GTYSSIVASCGWTQLMPSLHPAWAELGCLHPHLVRQTGLPSDCRILCGIHDSNASLLRYL 242 +SS+V W LM + PA LG + P L +TGL + + CG+HDSNASLL +L Sbjct: 186 AGFSSLVDRLDWRGLMAPVRPARNRLGPILPALAARTGLDARTPVFCGLHDSNASLLPHL 245 Query: 243 DRSDNGPRVVLSTGTWLIAAALDGGLDCLREQSDMLANVNARGEAVACMRFMGGREFAEL 302 SD P V+STGTW+++ A+ G L D L NVNA G+ + RFMGGREF+ L Sbjct: 246 -LSDAPPFSVVSTGTWVVSMAVGGREIALDAARDTLVNVNALGDPLPSARFMGGREFSVL 304 Query: 303 AGSTPHVCNEADLQALVDSQSMALPCFSGCGGPFAGRQGHISGSVPETAAGRYALATLYC 362 P +E D+ A++ +++ LP GPF + + R+A + Y Sbjct: 305 TEGQPETWSEDDIGAVLARKTLLLPSTQQGSGPFPHQAATWLDAESINDGQRFAAVSFYL 364 Query: 363 VLMTEYCLEHLQASGPVVVEGSFTANPYFAPLLAATSGGREVFCSEDGSGTTMGGWILRH 422 LMT CL+ + A GP VEG F N F +LAA++ GR V SE +GT++G +L Sbjct: 365 ALMTATCLDLIGADGPTTVEGPFARNQLFVGMLAAST-GRAVVASEATTGTSIGAALLAS 423 Query: 423 WREHPHGAALPAPKAVAPLRLRGWESYRQAWRHAV 457 + +G + + P R W Y AWR AV Sbjct: 424 DQVMAYGKG----ERIEPPTDRAWADYANAWRVAV 454