BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0006.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777103.1| excinuclease ATPase subunit [Herbaspirillum ...   188   2e-46
ref|YP_004754207.1| excinuclease ATPase subunit [Collimonas fung...   147   4e-34
gb|ADT88337.1| excinuclease ATPase subunit [Vibrio furnissii NCT...   128   2e-28
ref|ZP_05879289.1| excinuclease ATPase subunit [Vibrio furnissii...   128   3e-28
ref|YP_001980618.1| Excinuclease ATPase subunit [Cellvibrio japo...   120   7e-26

>ref|YP_003777103.1| excinuclease ATPase subunit [Herbaspirillum seropedicae SmR1]
 gb|ADJ65195.1| excinuclease ATPase subunit protein [Herbaspirillum seropedicae
           SmR1]
          Length = 147

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 3   KICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVL 62
           K  SL +A  +   A+LP QARDTKHLL ++   + KD E  L G+VKFYFA QPHPAVL
Sbjct: 2   KTSSLALAVTLALSAALPAQARDTKHLLPLDSASSMKDKEGVLDGSVKFYFAGQPHPAVL 61

Query: 63  EKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMAS 122
           EK++TD +N KTN+FGKSDE AC WAFLS L+    +A++LG N VVNIVSYYKK+EMAS
Sbjct: 62  EKISTDVTNMKTNAFGKSDEEACKWAFLSGLVQLHKKAKELGGNGVVNIVSYYKKNEMAS 121

Query: 123 TSKFECHAGAIIAGVALKGXNFVKIA 148
            ++FECHAGA +AGVALKG + VK+ 
Sbjct: 122 ATEFECHAGATMAGVALKG-DIVKLG 146


>ref|YP_004754207.1| excinuclease ATPase subunit [Collimonas fungivorans Ter331]
 gb|AEK63384.1| excinuclease ATPase subunit [Collimonas fungivorans Ter331]
          Length = 171

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 9   IAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVLEKLATD 68
           ++AG+L ++++  QA D   +L +   L   DA+ +L  +V+FYF DQ  P VLEK   +
Sbjct: 33  VSAGML-LSAVSAQAADRTLMLPVAGALAVNDAQGRLGDSVRFYFGDQRTPKVLEKFGGE 91

Query: 69  FSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMASTSKFEC 128
            ++++TN+FGKSDE ACNW FLSA+L  + RA+ LGANAVVNIVS Y   E AS ++FEC
Sbjct: 92  KTSQRTNAFGKSDEKACNWVFLSAMLHLQQRAQDLGANAVVNIVSNYNNVEHASATEFEC 151

Query: 129 HAGAIIAGVALKGXNFVKIA 148
           H GAI+AGVALKG  F +IA
Sbjct: 152 HVGAIMAGVALKG-EFARIA 170


>gb|ADT88337.1| excinuclease ATPase subunit [Vibrio furnissii NCTC 11218]
          Length = 144

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 1   MQKICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPA 60
           M+KI   +++  +L  AS    ARD     SI++ LN + A++KL   V+F+F DQ HPA
Sbjct: 1   MKKILPAILSTLVLCSAS--AVARDDVGNYSIQDALNQEVAQTKLGDDVQFFFGDQAHPA 58

Query: 61  VLEKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEM 120
           VL+ +    +N+KTN+F KSDE AC W FLSA++A + RA + G NAVVNI S YK +  
Sbjct: 59  VLKTMGEFKTNKKTNAFNKSDEEACQWVFLSAMIALKDRAIKEGGNAVVNIKSNYKNNLT 118

Query: 121 ASTSKFECHAGAIIAGVALKG 141
           +S   F+C AGA+IAGVAL G
Sbjct: 119 SSEDTFQCGAGAVIAGVALTG 139


>ref|ZP_05879289.1| excinuclease ATPase subunit [Vibrio furnissii CIP 102972]
 gb|EEX40880.1| excinuclease ATPase subunit [Vibrio furnissii CIP 102972]
          Length = 144

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 1   MQKICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPA 60
           M+KI   +++  +L + S    ARD     SI++ LN + A++KL   V+F+F DQ HPA
Sbjct: 1   MKKILPAILS--MLVLCSASAVARDDVGNYSIQDALNQEVAQTKLGDDVQFFFGDQVHPA 58

Query: 61  VLEKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEM 120
           VL+ +    +N+KTN+F KSDE AC W FLSA++A + RA + G NAVVNI S YK +  
Sbjct: 59  VLKTMGEFKTNKKTNAFNKSDEEACQWVFLSAMIALKDRAIKEGGNAVVNIKSNYKNNLT 118

Query: 121 ASTSKFECHAGAIIAGVALKG 141
           +S   F+C AGA+IAGVAL G
Sbjct: 119 SSEDTFQCGAGAVIAGVALTG 139


>ref|YP_001980618.1| Excinuclease ATPase subunit [Cellvibrio japonicus Ueda107]
 gb|ACE82735.1| Excinuclease ATPase subunit [Cellvibrio japonicus Ueda107]
          Length = 146

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 84/128 (65%)

Query: 14  LSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVLEKLATDFSNRK 73
           L+  +    ARD     SI E L+T+ A++ L  +VKFYF +QPH A+++K     +N+K
Sbjct: 13  LATCAATTLARDDIQEYSIAEALSTEQAKNILGTSVKFYFGNQPHGAIVKKYGEFGTNKK 72

Query: 74  TNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMASTSKFECHAGAI 133
           TN  GKSD+ AC WAFLSA+ +   RA + GANAVVNI S Y+    +ST  F+C +GAI
Sbjct: 73  TNGVGKSDKQACEWAFLSAMKSLRERAEREGANAVVNIRSNYRNATTSSTDTFKCGSGAI 132

Query: 134 IAGVALKG 141
           ++GVAL G
Sbjct: 133 MSGVALLG 140