BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0221.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752583.1| sugar phosphate isomerase/epimerase [Collimo... 587 e-166 ref|ZP_06844824.1| Xylose isomerase domain protein TIM barrel [B... 552 e-155 ref|YP_001894608.1| xylose isomerase [Burkholderia phytofirmans ... 551 e-155 ref|ZP_02883199.1| Xylose isomerase domain protein TIM barrel [B... 550 e-154 ref|YP_557369.1| hypothetical protein Bxe_A3672 [Burkholderia xe... 549 e-154 >ref|YP_004752583.1| sugar phosphate isomerase/epimerase [Collimonas fungivorans Ter331] gb|AEK61760.1| Sugar phosphate isomerase/epimerase [Collimonas fungivorans Ter331] Length = 350 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 288/357 (80%), Positives = 314/357 (87%), Gaps = 8/357 (2%) Query: 1 MQTIRGPAIFLAQFMGEEQPFDSLEHLAVWASGLGYKAVQLPTDPRLFDLALAAGSQIGX 60 M+TI GPA+FLAQ+MG++ PFD+LE+LA WAS LGYKA+QLPTD RLFDL LAA SQ Sbjct: 1 MKTILGPALFLAQYMGDKAPFDTLENLARWASALGYKALQLPTDARLFDLELAAQSQT-- 58 Query: 61 PPPPQQYCDDIAGMLAGHGLQISELSTHLQGQLIAVHPAYDALFDGFAPVHLRGNPAARR 120 YCDDIAGMLAG+GLQ+SELSTHLQGQL+AVHPAYD LFDGFAP LRGN AAR Sbjct: 59 ------YCDDIAGMLAGYGLQVSELSTHLQGQLLAVHPAYDVLFDGFAPPALRGNTAART 112 Query: 121 VWATEQLMFAAEASRRLDLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELGRRWRPIL 180 WA +QL AA ASRRL LRAHVTFSGALAWPYLYPWPQRPAGLVETAFAEL RRWRP+L Sbjct: 113 AWAEDQLHCAAIASRRLGLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELARRWRPVL 172 Query: 181 DAFDAAGVDVCYELHPGEDLHDGVTFDRFLQEVDGHARANILYDPSHFVLQQLDYLAFID 240 DAFD AGVD+CYELHPGEDLHDGVT +RFL+ VD H RANILYDPSHF+LQQLDYLAFID Sbjct: 173 DAFDDAGVDLCYELHPGEDLHDGVTLERFLEAVDHHPRANILYDPSHFLLQQLDYLAFID 232 Query: 241 IYHARIKAFHVKDAEFRPTGRQGVYGGFSDWQDRAGRFRSLGDGQIDFKAIFSKLTQYDY 300 IYH RIKAFHVKDAEFRP GRQGVYGGFSDWQ+RAGRFRSLGDGQIDFKAIFSK+ QYD+ Sbjct: 233 IYHRRIKAFHVKDAEFRPNGRQGVYGGFSDWQERAGRFRSLGDGQIDFKAIFSKMAQYDF 292 Query: 301 PGWAVLEWECCLKHPQDGAAEGAEFIRKHIIRVAQHAFDDFAGSTVRQEQINQLLGL 357 PGWAVLEWEC LKHP+DGAAEGAEFIR+HIIRV++ AFDDFAG V+ QI Q+LGL Sbjct: 293 PGWAVLEWECALKHPEDGAAEGAEFIRRHIIRVSERAFDDFAGGQVQTAQIAQILGL 349 >ref|ZP_06844824.1| Xylose isomerase domain protein TIM barrel [Burkholderia sp. Ch1-1] gb|EFG67588.1| Xylose isomerase domain protein TIM barrel [Burkholderia sp. Ch1-1] Length = 349 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/357 (75%), Positives = 301/357 (84%), Gaps = 8/357 (2%) Query: 1 MQTIRGPAIFLAQFMGEEQPFDSLEHLAVWASGLGYKAVQLPTDPRLFDLALAAGSQIGX 60 M+TI+GPAIFLAQFMG+E PFD+L HLA WA+GLG+K +Q+P D RL DL AA SQ Sbjct: 1 MKTIQGPAIFLAQFMGDEVPFDNLAHLAEWAAGLGFKGIQVPCDSRLIDLEQAASSQT-- 58 Query: 61 PPPPQQYCDDIAGMLAGHGLQISELSTHLQGQLIAVHPAYDALFDGFAPVHLRGNPAARR 120 YCD++ ++ G+ I+ELSTHLQGQL+AVHPAYDALFDGFA H+RG+PAAR Sbjct: 59 ------YCDELREIVDDAGVTITELSTHLQGQLVAVHPAYDALFDGFAAPHVRGDPAART 112 Query: 121 VWATEQLMFAAEASRRLDLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELGRRWRPIL 180 WA EQ+ AA+AS+RL L HV+FSGALAWPYLYPWPQRPAGLVE AF EL RRW PIL Sbjct: 113 QWAIEQMKLAAKASQRLGLSTHVSFSGALAWPYLYPWPQRPAGLVEAAFDELARRWTPIL 172 Query: 181 DAFDAAGVDVCYELHPGEDLHDGVTFDRFLQEVDGHARANILYDPSHFVLQQLDYLAFID 240 DAFDAAGVDVCYELHPGEDLHDGVTF+RFL V HARANILYDPSHFVLQQLDYLAFID Sbjct: 173 DAFDAAGVDVCYELHPGEDLHDGVTFERFLDAVKQHARANILYDPSHFVLQQLDYLAFID 232 Query: 241 IYHARIKAFHVKDAEFRPTGRQGVYGGFSDWQDRAGRFRSLGDGQIDFKAIFSKLTQYDY 300 IYH RIKAFHVKDAEFRPTG+QGVYGG+S W +RAGRFRSLGDGQIDF AIFSK+ QYD+ Sbjct: 233 IYHERIKAFHVKDAEFRPTGKQGVYGGYSGWVERAGRFRSLGDGQIDFGAIFSKMAQYDF 292 Query: 301 PGWAVLEWECCLKHPQDGAAEGAEFIRKHIIRVAQHAFDDFAGSTVRQEQINQLLGL 357 PGWAVLEWEC LKHP DGA EGAEFIR+HIIRVA+HAFDDFAGS V Q+ ++LG+ Sbjct: 293 PGWAVLEWECALKHPHDGAREGAEFIRRHIIRVAEHAFDDFAGSGVDAAQLKRVLGI 349 >ref|YP_001894608.1| xylose isomerase [Burkholderia phytofirmans PsJN] gb|ACD15384.1| Xylose isomerase domain protein TIM barrel [Burkholderia phytofirmans PsJN] Length = 349 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/357 (74%), Positives = 300/357 (84%), Gaps = 8/357 (2%) Query: 1 MQTIRGPAIFLAQFMGEEQPFDSLEHLAVWASGLGYKAVQLPTDPRLFDLALAAGSQIGX 60 M+TI+GPAIFLAQFMG+E PFD+L HLA WA+GLG+K +Q+P D RL DL AA SQ Sbjct: 1 MKTIQGPAIFLAQFMGDEVPFDNLAHLAEWAAGLGFKGIQVPCDSRLIDLEQAAASQT-- 58 Query: 61 PPPPQQYCDDIAGMLAGHGLQISELSTHLQGQLIAVHPAYDALFDGFAPVHLRGNPAARR 120 YCD++ ++ G+ I+ELSTHLQGQL+AVHPAYDALFDGFA H+RG+PAAR Sbjct: 59 ------YCDELREIVDNAGVTITELSTHLQGQLVAVHPAYDALFDGFAAPHVRGDPAART 112 Query: 121 VWATEQLMFAAEASRRLDLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELGRRWRPIL 180 WA EQ+ AA+AS+RL L HV+FSGALAWPYLYPWPQRPAGLVE AF EL RRW PIL Sbjct: 113 QWAIEQMKLAAKASQRLGLTTHVSFSGALAWPYLYPWPQRPAGLVEAAFDELARRWTPIL 172 Query: 181 DAFDAAGVDVCYELHPGEDLHDGVTFDRFLQEVDGHARANILYDPSHFVLQQLDYLAFID 240 DAFDAAGVDVCYELHPGEDLHDGVTF+RFL V HARANILYDPSHFVLQQLDYLAFID Sbjct: 173 DAFDAAGVDVCYELHPGEDLHDGVTFERFLDAVKQHARANILYDPSHFVLQQLDYLAFID 232 Query: 241 IYHARIKAFHVKDAEFRPTGRQGVYGGFSDWQDRAGRFRSLGDGQIDFKAIFSKLTQYDY 300 IYH RIKAFHVKDAEFRP G+QGVYGG+S W +RAGRFRSLGDGQIDF AIFSK+ QYD+ Sbjct: 233 IYHERIKAFHVKDAEFRPNGKQGVYGGYSGWVERAGRFRSLGDGQIDFGAIFSKMAQYDF 292 Query: 301 PGWAVLEWECCLKHPQDGAAEGAEFIRKHIIRVAQHAFDDFAGSTVRQEQINQLLGL 357 PGWAVLEWEC LKHP DGA EGAEFIR+HIIRVA+HAFDDFAGS V Q+ ++LG+ Sbjct: 293 PGWAVLEWECALKHPHDGAREGAEFIRRHIIRVAEHAFDDFAGSGVDAAQLKRVLGI 349 >ref|ZP_02883199.1| Xylose isomerase domain protein TIM barrel [Burkholderia graminis C4D1M] gb|EDT11483.1| Xylose isomerase domain protein TIM barrel [Burkholderia graminis C4D1M] Length = 349 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/357 (74%), Positives = 298/357 (83%), Gaps = 8/357 (2%) Query: 1 MQTIRGPAIFLAQFMGEEQPFDSLEHLAVWASGLGYKAVQLPTDPRLFDLALAAGSQIGX 60 M+TI+GPAIFLAQFMG+E PFD+L HLA WA+ LG+K +Q+P D RL DL AA SQ Sbjct: 1 MKTIKGPAIFLAQFMGDEAPFDNLAHLASWAASLGFKGIQVPCDARLIDLEQAASSQ--- 57 Query: 61 PPPPQQYCDDIAGMLAGHGLQISELSTHLQGQLIAVHPAYDALFDGFAPVHLRGNPAARR 120 YCDD+ + G+ I+ELSTHLQGQL+AVHPAYD LFDGFA H+RGNP+AR Sbjct: 58 -----SYCDDLRETVDNAGVTITELSTHLQGQLVAVHPAYDTLFDGFAAAHVRGNPSART 112 Query: 121 VWATEQLMFAAEASRRLDLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELGRRWRPIL 180 WA EQL AA+AS+RL L AHV+FSGALAWPYLYPWPQRPAGLVE AF EL RRW PIL Sbjct: 113 EWAIEQLKLAAKASQRLGLDAHVSFSGALAWPYLYPWPQRPAGLVEAAFDELARRWTPIL 172 Query: 181 DAFDAAGVDVCYELHPGEDLHDGVTFDRFLQEVDGHARANILYDPSHFVLQQLDYLAFID 240 DAFDAAGV+VCYELHPGEDLHDGVTF+RFL V H RANILYDPSHFVLQQLDYLAFID Sbjct: 173 DAFDAAGVNVCYELHPGEDLHDGVTFERFLDAVRQHPRANILYDPSHFVLQQLDYLAFID 232 Query: 241 IYHARIKAFHVKDAEFRPTGRQGVYGGFSDWQDRAGRFRSLGDGQIDFKAIFSKLTQYDY 300 IYH RIKAFHVKDAEFRP G+QGVYGG+S W +RAGRFRSLGDGQIDF+AIFSK+ QYD+ Sbjct: 233 IYHERIKAFHVKDAEFRPNGKQGVYGGYSGWVERAGRFRSLGDGQIDFRAIFSKMAQYDF 292 Query: 301 PGWAVLEWECCLKHPQDGAAEGAEFIRKHIIRVAQHAFDDFAGSTVRQEQINQLLGL 357 PGWAVLEWEC LKHP DGA EGA+FIR+HIIRVA+HAFDDFAGS V Q+ ++LG+ Sbjct: 293 PGWAVLEWECALKHPHDGAREGAQFIREHIIRVAEHAFDDFAGSGVDAAQLKRVLGI 349 >ref|YP_557369.1| hypothetical protein Bxe_A3672 [Burkholderia xenovorans LB400] gb|ABE29317.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 349 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/357 (74%), Positives = 299/357 (83%), Gaps = 8/357 (2%) Query: 1 MQTIRGPAIFLAQFMGEEQPFDSLEHLAVWASGLGYKAVQLPTDPRLFDLALAAGSQIGX 60 M+TI+GPAIFLAQFMG+E PFD+L HLA WA+GLG+K +Q+P D RL DL AA SQ Sbjct: 1 MKTIQGPAIFLAQFMGDEVPFDNLAHLAEWAAGLGFKGIQVPCDSRLIDLEQAASSQT-- 58 Query: 61 PPPPQQYCDDIAGMLAGHGLQISELSTHLQGQLIAVHPAYDALFDGFAPVHLRGNPAARR 120 YCD++ + G+ I+ELSTHLQGQL+AVHPAYDALFDGFA +RG+PAAR Sbjct: 59 ------YCDELRETVDDAGVTITELSTHLQGQLVAVHPAYDALFDGFAAPQVRGDPAART 112 Query: 121 VWATEQLMFAAEASRRLDLRAHVTFSGALAWPYLYPWPQRPAGLVETAFAELGRRWRPIL 180 WA EQ+ AA+AS+RL L HV+FSGALAWPYLYPWPQRPAGLVE AF EL RRW PIL Sbjct: 113 QWAIEQMKLAAKASQRLGLSTHVSFSGALAWPYLYPWPQRPAGLVEAAFDELARRWTPIL 172 Query: 181 DAFDAAGVDVCYELHPGEDLHDGVTFDRFLQEVDGHARANILYDPSHFVLQQLDYLAFID 240 DAFDAAGVDVCYELHPGEDLHDGVTF+RFL V HARANILYDPSHFVLQQLDYLAFID Sbjct: 173 DAFDAAGVDVCYELHPGEDLHDGVTFERFLDAVKQHARANILYDPSHFVLQQLDYLAFID 232 Query: 241 IYHARIKAFHVKDAEFRPTGRQGVYGGFSDWQDRAGRFRSLGDGQIDFKAIFSKLTQYDY 300 IYH RIKAFHVKDAEFRPTG+QGVYGG+S W +RAGRFRSLGDGQIDF AIFSK+ QYD+ Sbjct: 233 IYHERIKAFHVKDAEFRPTGKQGVYGGYSGWVERAGRFRSLGDGQIDFGAIFSKMAQYDF 292 Query: 301 PGWAVLEWECCLKHPQDGAAEGAEFIRKHIIRVAQHAFDDFAGSTVRQEQINQLLGL 357 PGWAVLEWEC LKHP DGA EGAEFIR+HIIRVA+HAFDDFAGS V Q+ ++LG+ Sbjct: 293 PGWAVLEWECALKHPHDGAREGAEFIRRHIIRVAEHAFDDFAGSGVDAAQLKRVLGI 349