BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0214.p         (179 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001892436.1| LysR family transcrptional regulator [Ralsto...   228   4e-58
ref|ZP_02883907.1| transcriptional regulator, LysR family [Burkh...   228   4e-58
ref|YP_003607036.1| LysR family transcriptional regulator [Burkh...   227   6e-58
ref|YP_001478688.1| LysR family transcriptional regulator [Serra...   226   1e-57
ref|ZP_03265051.1| transcriptional regulator, LysR family [Burkh...   226   2e-57

>ref|YP_001892436.1| LysR family transcrptional regulator [Ralstonia pickettii 12J]
 ref|YP_002983938.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gb|ACD29009.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gb|ACS65266.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 297

 Score =  228 bits (580), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 127/143 (88%)

Query: 37  SDDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDA 96
           +D APPG+R+R LF ERYVL+GR+GHP+L+R+PT AQFC L+HVIVSPDGGGF GVTD+A
Sbjct: 155 TDGAPPGLRRRALFTERYVLIGRAGHPRLKRRPTLAQFCTLDHVIVSPDGGGFFGVTDEA 214

Query: 97  LAAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAM 156
           LAAAG TRRVVLSVPHFLF+M+ +A+TDMVAM+P RL+RG++ALQ VEPP +V GY+M+M
Sbjct: 215 LAAAGATRRVVLSVPHFLFVMTAVASTDMVAMLPERLVRGASALQAVEPPVEVPGYEMSM 274

Query: 157 LWHERSHRDPAHQWLRDHLAASV 179
           LWHER HRDP HQWLRD +A +V
Sbjct: 275 LWHERVHRDPGHQWLRDVIAGAV 297


>ref|ZP_02883907.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gb|EDT10567.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score =  228 bits (580), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 125/143 (87%)

Query: 37  SDDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDA 96
           S+DAP G+R+RVLF ERYVL GR+ HP+L+R+PT AQF  LEHVIVSPDGGGF GVTD  
Sbjct: 160 SEDAPAGLRRRVLFAERYVLAGRADHPRLKRRPTLAQFSKLEHVIVSPDGGGFAGVTDQV 219

Query: 97  LAAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAM 156
           LA AGLTRRVVLSVPHFLFM+S LAN+D+VAMVP+RL+R +AAL+VVE P +V GY+MAM
Sbjct: 220 LARAGLTRRVVLSVPHFLFMISALANSDLVAMVPARLVRDNAALRVVESPVEVPGYEMAM 279

Query: 157 LWHERSHRDPAHQWLRDHLAASV 179
           LWHERSHRDPAHQWLR H+A SV
Sbjct: 280 LWHERSHRDPAHQWLRAHIAGSV 302


>ref|YP_003607036.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gb|ADG17525.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score =  227 bits (578), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/143 (75%), Positives = 125/143 (87%)

Query: 37  SDDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDA 96
           S+ AP G+R+RVLF ERYVLVGR+GHPKL+R+PT AQFC LEHVIVSPDGGGF GVTD+ 
Sbjct: 160 SEGAPEGLRRRVLFAERYVLVGRAGHPKLKRRPTLAQFCKLEHVIVSPDGGGFFGVTDET 219

Query: 97  LAAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAM 156
           LA AGL R+VVLSVPHFLFM SVLA+TD+V M+P+RL+RGS  L++VEPP +V GY MAM
Sbjct: 220 LAKAGLARKVVLSVPHFLFMQSVLASTDLVGMLPARLVRGSDTLRMVEPPVEVPGYAMAM 279

Query: 157 LWHERSHRDPAHQWLRDHLAASV 179
           LWHER HRDPAHQWLRD +AASV
Sbjct: 280 LWHERVHRDPAHQWLRDFIAASV 302


>ref|YP_001478688.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gb|ABV41560.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 298

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 123/142 (86%)

Query: 38  DDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDAL 97
           + +PP +RQR+LF ERYVLVGR+GHP L+  P+ AQFC LEHV+VSPDGGGF G+TD  L
Sbjct: 156 EGSPPNLRQRILFSERYVLVGRAGHPGLQNPPSLAQFCELEHVMVSPDGGGFFGITDKVL 215

Query: 98  AAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAML 157
           A AGLTRRVVLSVPHFLF+MSVLAN+D+VAM+PSRL+R + ALQVVEPP  V G++M ML
Sbjct: 216 AEAGLTRRVVLSVPHFLFVMSVLANSDLVAMLPSRLVRNNNALQVVEPPLQVPGFEMTML 275

Query: 158 WHERSHRDPAHQWLRDHLAASV 179
           WHERSHRDPAHQWLR+H+ ASV
Sbjct: 276 WHERSHRDPAHQWLREHIVASV 297


>ref|ZP_03265051.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gb|EEA03302.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 126/143 (88%)

Query: 37  SDDAPPGMRQRVLFRERYVLVGRSGHPKLRRKPTPAQFCALEHVIVSPDGGGFRGVTDDA 96
           S+ AP G+R+RVLF ERYVLVGR+GHP+L+R+PT AQFC LEHVIVSPDGGGF GVTD+ 
Sbjct: 160 SEGAPEGLRRRVLFAERYVLVGRAGHPRLKRRPTLAQFCKLEHVIVSPDGGGFFGVTDET 219

Query: 97  LAAAGLTRRVVLSVPHFLFMMSVLANTDMVAMVPSRLMRGSAALQVVEPPFDVAGYDMAM 156
           LA  GL R+VVLSVPHFLFM SVLA+TD+V M+P+RL+RGS AL++VEPP +V GY+MAM
Sbjct: 220 LAKVGLARKVVLSVPHFLFMQSVLASTDLVGMLPARLVRGSDALRMVEPPVEVPGYEMAM 279

Query: 157 LWHERSHRDPAHQWLRDHLAASV 179
           LWHER HRDPAHQWLR+ +AASV
Sbjct: 280 LWHERLHRDPAHQWLREFIAASV 302