BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0194.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_336949.1| sugar ABC transporter permease [Burkholderia ps... 411 e-113 ref|ZP_02500655.1| sugar ABC transporter, permease protein [Burk... 405 e-111 ref|YP_110275.1| ABC ribose transport system, permease protein [... 404 e-111 ref|YP_001074404.1| carbohydrate ABC transporter permease [Burkh... 404 e-111 ref|ZP_01767641.1| ABC transporter, carbohydrate uptake transpor... 403 e-110 >ref|YP_336949.1| sugar ABC transporter permease [Burkholderia pseudomallei 1710b] gb|ABA52941.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710b] Length = 835 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/307 (67%), Positives = 258/307 (84%), Gaps = 2/307 (0%) Query: 3 QFYARYGILAALIALCIFLSFSNQYFMSWGNWADILRQTSINGILAIGMTFVVLTAGIDL 62 + +R+GI +ALC+ L+F++ YF++W NW+DILRQTSINGILAIGMT+V+LT GIDL Sbjct: 530 ELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDL 589 Query: 63 SVGAILAFAGMVSAWLVAGDSTYGLTMSLLVGLGVGALLGAVNGLLVARLSVPPFVASLG 122 SVG++LA AG+VS +AG + +GL +SL G+ GA LGA+NG+ +ARL+VPPFVA+LG Sbjct: 590 SVGSVLALAGIVSG--LAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLG 647 Query: 123 MLSAARGLTYIYNDGMPVSDLPDDFLAIGAGHVWQVPVPILIFVAVIAISWFVLRYTIYG 182 MLS ARG+TYI NDG PV++LPDD+L++G G + + +P+LIF V W+VLRYT YG Sbjct: 648 MLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYG 707 Query: 183 RYIYAVGGNSKSAKTSGISTRKVLFAVYVVSGFLAALAGILLAARTTAALPQAGVSYELD 242 RY+YAVGGN KSA+TSGI RKV+F+VYVVSG LA LAG++LAARTT+ALPQAGVSYELD Sbjct: 708 RYLYAVGGNEKSARTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELD 767 Query: 243 AIAAVVIGGTSLSGGTGSLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGAVLL 302 AIAAVVIGGTSLSGG G + GT+ GALLIGVINNGLNLLGVSSYYQQ+ KG+IIV AVL+ Sbjct: 768 AIAAVVIGGTSLSGGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLI 827 Query: 303 DVSRKKQ 309 DV+RK+Q Sbjct: 828 DVARKQQ 834 >ref|ZP_02500655.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei 112] ref|ZP_02508594.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei BCC215] ref|ZP_03454726.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 576] ref|ZP_04889302.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1655] ref|ZP_04895953.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04966953.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 406e] gb|EDO86859.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 406e] gb|EDO92791.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei Pasteur 52237] gb|EDU10286.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1655] gb|EEC34152.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 576] Length = 329 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/307 (67%), Positives = 258/307 (84%), Gaps = 2/307 (0%) Query: 3 QFYARYGILAALIALCIFLSFSNQYFMSWGNWADILRQTSINGILAIGMTFVVLTAGIDL 62 + +R+GI +ALC+ L+F++ YF++W NW+DILRQTSINGILAIGMT+V+LT GIDL Sbjct: 24 ELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDL 83 Query: 63 SVGAILAFAGMVSAWLVAGDSTYGLTMSLLVGLGVGALLGAVNGLLVARLSVPPFVASLG 122 SVG++LA AG+VS +AG + +GL +SL G+ GA LGA+NG+ +ARL+VPPFVA+LG Sbjct: 84 SVGSVLALAGIVSG--LAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLG 141 Query: 123 MLSAARGLTYIYNDGMPVSDLPDDFLAIGAGHVWQVPVPILIFVAVIAISWFVLRYTIYG 182 MLS ARG+TYI NDG PV++LPDD+L++G G + + +P+LIF V W+VLRYT YG Sbjct: 142 MLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYG 201 Query: 183 RYIYAVGGNSKSAKTSGISTRKVLFAVYVVSGFLAALAGILLAARTTAALPQAGVSYELD 242 RY+YAVGGN KSA+TSGI RKV+F+VYVVSG LA LAG++LAARTT+ALPQAGVSYELD Sbjct: 202 RYLYAVGGNEKSARTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELD 261 Query: 243 AIAAVVIGGTSLSGGTGSLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGAVLL 302 AIAAVVIGGTSLSGG G + GT+ GALLIGVINNGLNLLGVSSYYQQ+ KG+IIV AVL+ Sbjct: 262 AIAAVVIGGTSLSGGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLI 321 Query: 303 DVSRKKQ 309 DV+RK+Q Sbjct: 322 DVARKQQ 328 >ref|YP_110275.1| ABC ribose transport system, permease protein [Burkholderia pseudomallei K96243] ref|ZP_04901729.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei S13] emb|CAH37702.1| putative ABC ribose transport system, permease protein [Burkholderia pseudomallei K96243] gb|EDS84741.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei S13] Length = 325 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/307 (67%), Positives = 258/307 (84%), Gaps = 2/307 (0%) Query: 3 QFYARYGILAALIALCIFLSFSNQYFMSWGNWADILRQTSINGILAIGMTFVVLTAGIDL 62 + +R+GI +ALC+ L+F++ YF++W NW+DILRQTSINGILAIGMT+V+LT GIDL Sbjct: 20 ELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDL 79 Query: 63 SVGAILAFAGMVSAWLVAGDSTYGLTMSLLVGLGVGALLGAVNGLLVARLSVPPFVASLG 122 SVG++LA AG+VS +AG + +GL +SL G+ GA LGA+NG+ +ARL+VPPFVA+LG Sbjct: 80 SVGSVLALAGIVSG--LAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLG 137 Query: 123 MLSAARGLTYIYNDGMPVSDLPDDFLAIGAGHVWQVPVPILIFVAVIAISWFVLRYTIYG 182 MLS ARG+TYI NDG PV++LPDD+L++G G + + +P+LIF V W+VLRYT YG Sbjct: 138 MLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYG 197 Query: 183 RYIYAVGGNSKSAKTSGISTRKVLFAVYVVSGFLAALAGILLAARTTAALPQAGVSYELD 242 RY+YAVGGN KSA+TSGI RKV+F+VYVVSG LA LAG++LAARTT+ALPQAGVSYELD Sbjct: 198 RYLYAVGGNEKSARTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELD 257 Query: 243 AIAAVVIGGTSLSGGTGSLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGAVLL 302 AIAAVVIGGTSLSGG G + GT+ GALLIGVINNGLNLLGVSSYYQQ+ KG+IIV AVL+ Sbjct: 258 AIAAVVIGGTSLSGGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLI 317 Query: 303 DVSRKKQ 309 DV+RK+Q Sbjct: 318 DVARKQQ 324 >ref|YP_001074404.1| carbohydrate ABC transporter permease [Burkholderia pseudomallei 1106a] ref|ZP_02450103.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei 91] ref|ZP_02492466.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_03790435.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei Pakistan 9] ref|ZP_04522553.1| ribose transport system permease protein RbsC [Burkholderia pseudomallei MSHR346] ref|ZP_04811118.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1106b] ref|ZP_04953919.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1710a] gb|ABN93539.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1106a] gb|EEH29182.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei Pakistan 9] gb|EEP51467.1| ribose transport system permease protein RbsC [Burkholderia pseudomallei MSHR346] gb|EES21743.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1106b] gb|EET03441.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 1710a] Length = 310 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/307 (67%), Positives = 258/307 (84%), Gaps = 2/307 (0%) Query: 3 QFYARYGILAALIALCIFLSFSNQYFMSWGNWADILRQTSINGILAIGMTFVVLTAGIDL 62 + +R+GI +ALC+ L+F++ YF++W NW+DILRQTSINGILAIGMT+V+LT GIDL Sbjct: 5 ELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDL 64 Query: 63 SVGAILAFAGMVSAWLVAGDSTYGLTMSLLVGLGVGALLGAVNGLLVARLSVPPFVASLG 122 SVG++LA AG+VS +AG + +GL +SL G+ GA LGA+NG+ +ARL+VPPFVA+LG Sbjct: 65 SVGSVLALAGIVSG--LAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLG 122 Query: 123 MLSAARGLTYIYNDGMPVSDLPDDFLAIGAGHVWQVPVPILIFVAVIAISWFVLRYTIYG 182 MLS ARG+TYI NDG PV++LPDD+L++G G + + +P+LIF V W+VLRYT YG Sbjct: 123 MLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYG 182 Query: 183 RYIYAVGGNSKSAKTSGISTRKVLFAVYVVSGFLAALAGILLAARTTAALPQAGVSYELD 242 RY+YAVGGN KSA+TSGI RKV+F+VYVVSG LA LAG++LAARTT+ALPQAGVSYELD Sbjct: 183 RYLYAVGGNEKSARTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELD 242 Query: 243 AIAAVVIGGTSLSGGTGSLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGAVLL 302 AIAAVVIGGTSLSGG G + GT+ GALLIGVINNGLNLLGVSSYYQQ+ KG+IIV AVL+ Sbjct: 243 AIAAVVIGGTSLSGGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLI 302 Query: 303 DVSRKKQ 309 DV+RK+Q Sbjct: 303 DVARKQQ 309 >ref|ZP_01767641.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 305] ref|ZP_02484277.1| sugar ABC transporter, permease protein [Burkholderia pseudomallei 7894] gb|EBA48037.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Burkholderia pseudomallei 305] Length = 310 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/307 (67%), Positives = 257/307 (83%), Gaps = 2/307 (0%) Query: 3 QFYARYGILAALIALCIFLSFSNQYFMSWGNWADILRQTSINGILAIGMTFVVLTAGIDL 62 + +R+GI +ALC+ L+F++ YF++W NW+DILRQTSINGILAIGMT+V+LT GIDL Sbjct: 5 ELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDL 64 Query: 63 SVGAILAFAGMVSAWLVAGDSTYGLTMSLLVGLGVGALLGAVNGLLVARLSVPPFVASLG 122 SVG++LA AG+VS +AG + +GL +SL G+ GA LGA+NG+ +ARL+VPPFVA+LG Sbjct: 65 SVGSVLALAGIVSG--LAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLG 122 Query: 123 MLSAARGLTYIYNDGMPVSDLPDDFLAIGAGHVWQVPVPILIFVAVIAISWFVLRYTIYG 182 MLS ARG+TYI NDG PV++LPDD+L++G G + + +P+LIF V W+VLRYT YG Sbjct: 123 MLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYG 182 Query: 183 RYIYAVGGNSKSAKTSGISTRKVLFAVYVVSGFLAALAGILLAARTTAALPQAGVSYELD 242 RY+YAVGGN KSA+TSGI RKV+F+VYVVSG LA LAG++LAARTT+ALPQAG SYELD Sbjct: 183 RYLYAVGGNEKSARTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGASYELD 242 Query: 243 AIAAVVIGGTSLSGGTGSLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGAVLL 302 AIAAVVIGGTSLSGG G + GT+ GALLIGVINNGLNLLGVSSYYQQ+ KG+IIV AVL+ Sbjct: 243 AIAAVVIGGTSLSGGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLI 302 Query: 303 DVSRKKQ 309 DV+RK+Q Sbjct: 303 DVARKQQ 309