BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0185.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775369.1| chemotaxis signal transduction protein [Herb... 493 e-137 ref|YP_003017031.1| response regulator receiver modulated CheW p... 442 e-122 ref|YP_003259227.1| response regulator receiver modulated CheW p... 438 e-121 ref|ZP_03828209.1| putative chemotaxis signal transduction prote... 437 e-121 ref|YP_003334077.1| response regulator receiver modulated CheW p... 437 e-120 >ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ63461.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 236/319 (73%), Positives = 278/319 (87%), Gaps = 3/319 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60 MD FQKEIDERTNLT+SNKFELLLFRLGTDP+G RSELFGINVFKIREIVPM +TKAAG Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60 Query: 61 TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120 T+SP+LGMVNIRGQIISVIDLPAV+GCVP +GLNILLVTEYARSTQAFAVESVDEIVRLE Sbjct: 61 TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120 Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEHIQ 180 WSQVLSAE+ +GG FVTSIARLD D +SRLAQVLDVEQILHEIMPT+RD++M LE Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180 Query: 181 ---LKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVP 237 ++PG++ +AADDSKVARSL+E GL+A+ +P+ M TGKEAWEK+Q + +E +++G P Sbjct: 181 SHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAEGRP 240 Query: 238 ITDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 297 I+D+++ VLTDLEMPEMDGFTLTRNIKR+D LK+IPV+IHSSLSGSANE+HV+++G D Y Sbjct: 241 ISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGGDAY 300 Query: 298 VAKFVIEDLTAALIKALGK 316 VAKF +L A + L K Sbjct: 301 VAKFEANELAATIYGVLDK 319 >ref|YP_003017031.1| response regulator receiver modulated CheW protein [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT12495.1| response regulator receiver modulated CheW protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 321 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/318 (67%), Positives = 265/318 (83%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60 MD FQKEIDERTNLTS+NKFELLLF+LG P G +SELFGINVFK+REIVPM +TKAAG Sbjct: 1 MDNFQKEIDERTNLTSANKFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120 +SP+LGMVNIRGQII VIDLPAV+G P++GLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSSPDTGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEH-- 178 WSQVL+AE+ +++TSIARLD+D S+RLA VLDVEQIL +I+P ER+ ++ E Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDNDKDSNRLALVLDVEQILFDIIPGERETKLKNSEEKI 180 Query: 179 IQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPI 238 PG+I + A+DSKVARSL+E GL +G+PF M TG++AW K++ I +E +S+G PI Sbjct: 181 YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRPI 240 Query: 239 TDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYV 298 +D++++VLTDLEMPEMDGFTLTRNIKR++ LK IPVVIHSSLSGSANE+HV+N+GAD YV Sbjct: 241 SDKISLVLTDLEMPEMDGFTLTRNIKREEFLKNIPVVIHSSLSGSANEDHVRNVGADAYV 300 Query: 299 AKFVIEDLTAALIKALGK 316 AKF I +L++A+ L K Sbjct: 301 AKFEINELSSAIQTVLNK 318 >ref|YP_003259227.1| response regulator receiver modulated CheW protein [Pectobacterium wasabiae WPP163] gb|ACX87620.1| response regulator receiver modulated CheW protein [Pectobacterium wasabiae WPP163] Length = 321 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/318 (66%), Positives = 262/318 (82%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60 MD FQKEIDERTNLT++N+FELLLF+LG P G +SELFGINVFK+REIVPM +TKAAG Sbjct: 1 MDNFQKEIDERTNLTAANRFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120 +SP+LGMVNIRGQII VIDLPAV+G P +GLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSAPETGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEH-- 178 WSQVL+AE+ +++TSIARLD D S+RLA VLDVEQIL +I+P +R+ ++ E Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDSDKDSNRLALVLDVEQILFDIIPGDRETKLKNAEEKV 180 Query: 179 IQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPI 238 PG+I + A+DSKVARSL+E GL +G+PF M TG++AW K++ I +E +S+G PI Sbjct: 181 YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRPI 240 Query: 239 TDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYV 298 +D++++VLTDLEMPEMDGFTLTRNIKR++ LK IPVVIHSSLSGSANE+HV+N+GAD YV Sbjct: 241 SDKISLVLTDLEMPEMDGFTLTRNIKREEYLKNIPVVIHSSLSGSANEDHVRNVGADAYV 300 Query: 299 AKFVIEDLTAALIKALGK 316 AKF I +L+ A+ L K Sbjct: 301 AKFEINELSTAIQTVLSK 318 >ref|ZP_03828209.1| putative chemotaxis signal transduction protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 321 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/318 (66%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60 MD FQKEIDERTNLTS+NKFELLLF+LG P G +SELFGINVFK+REIVPM +TKAAG Sbjct: 1 MDNFQKEIDERTNLTSANKFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120 +SP+LGMVNIRGQII VIDLPAV+G +GLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSSSETGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEH-- 178 WSQVL+AE+ +++TSIARLD+D S+RLA VLDVEQIL +I+P +R+ ++ E Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDNDKDSNRLALVLDVEQILFDIIPGDRETKLKNAEEKI 180 Query: 179 IQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPI 238 PG+I + A+DSKVARSL+E GL +G+PF M TG++AW K++ I +E +S+G PI Sbjct: 181 YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRPI 240 Query: 239 TDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYV 298 +D++++VLTDLEMPEMDGFTLTRNIKR++ LK IPVVIHSSLSGSANE+HV+N+GAD YV Sbjct: 241 SDKISLVLTDLEMPEMDGFTLTRNIKREEYLKNIPVVIHSSLSGSANEDHVRNVGADAYV 300 Query: 299 AKFVIEDLTAALIKALGK 316 AKF I +L++A+ L K Sbjct: 301 AKFEINELSSAIQTVLNK 318 >ref|YP_003334077.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] gb|ACZ77372.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] Length = 322 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/318 (65%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGTDPYGVRSELFGINVFKIREIVPMQEITKAAG 60 MD FQKEI+ERTNLTSSNKFELLLFRLG+ SELFGINVFK+REIVPM +TKAAG Sbjct: 1 MDKFQKEIEERTNLTSSNKFELLLFRLGSATGEGPSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TRSPLLGMVNIRGQIISVIDLPAVIGCVPNSGLNILLVTEYARSTQAFAVESVDEIVRLE 120 P+LGM+NIRGQII VIDLPAV+GC ++G NILLVTEYARSTQAFAVESVD+IVRL+ Sbjct: 61 MTPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVRLD 120 Query: 121 WSQVLSAESKAGGNFVTSIARLDDDLSSSRLAQVLDVEQILHEIMPTERDMEMTGLEH-- 178 WSQV +AE+ +++TSIARLD D +S+RLA VLDVEQILH+I+PT R++++ +E Sbjct: 121 WSQVNTAEAGVSNSYITSIARLDSDPASNRLALVLDVEQILHDIIPTAREIKIESVEEKT 180 Query: 179 IQLKPGSIILAADDSKVARSLVESGLKALGLPFVMCKTGKEAWEKLQDIYKETKSQGVPI 238 LKPG++ + A+DSKVAR+++E+GLK + +P++M TG EAW K++ + +E K++G PI Sbjct: 181 FHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKSMAEEAKAEGRPI 240 Query: 239 TDRVAMVLTDLEMPEMDGFTLTRNIKRDDGLKAIPVVIHSSLSGSANEEHVKNIGADGYV 298 +D++A VLTDLEMPEMDGFTLTRNIKRD+ LK IPV+IHSSLSGSANE+HV+N+GAD YV Sbjct: 241 SDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGSANEDHVRNVGADSYV 300 Query: 299 AKFVIEDLTAALIKALGK 316 AKF I +L AA+ K + + Sbjct: 301 AKFEINELAAAIHKVVDR 318