BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0172.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum sero... 469 e-130 ref|YP_004753518.1| GTP-binding protein [Collimonas fungivorans ... 451 e-125 ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium s... 432 e-119 ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsen... 430 e-118 ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bac... 421 e-116 >ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/263 (86%), Positives = 243/263 (92%), Gaps = 1/263 (0%) Query: 1 MTDLNAPSDASTDAL-SDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRI 59 MTD DAS SDYRCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRI Sbjct: 1 MTDSPMADDASAQTPDSDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRI 60 Query: 60 TGIQTINNTQFVYVDTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQ 119 TGIQTI NTQ+VYVDTPGFQTRHSNALNKTLNRTVT+TLTAADVIL+VIEAGTFGPADKQ Sbjct: 61 TGIQTIENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQ 120 Query: 120 VMALLPANVPCILVMNKSDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEE 179 V+ LLPANVPCILV+NK+DR+KDK+ LMPFA+EVAS H+FA+VVPVSAKQRFQLD LQEE Sbjct: 121 VLDLLPANVPCILVLNKADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEE 180 Query: 180 IRKLLPVNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLR 239 +RKLLP NPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEG+LR Sbjct: 181 VRKLLPQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR 240 Query: 240 RVFAAILVERDGHKSMVIGNKGG 262 R+FAAILVERD HK+MVIG KG Sbjct: 241 RIFAAILVERDNHKAMVIGQKGA 263 >ref|YP_004753518.1| GTP-binding protein [Collimonas fungivorans Ter331] gb|AEK62695.1| GTP-binding protein [Collimonas fungivorans Ter331] Length = 309 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/255 (85%), Positives = 237/255 (92%) Query: 8 SDASTDALSDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINN 67 S A + A +D+RCGYIAIVGRPNVGKSTLMN LIGAKVSITSRKAQTTRHRITGIQT+ + Sbjct: 9 STAISSAATDFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVAD 68 Query: 68 TQFVYVDTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPAN 127 TQFVYVDTPGFQTRHSNALNKTLNRTVT+TLTAADVILY+IEAGTFGPAD+QVMALLPAN Sbjct: 69 TQFVYVDTPGFQTRHSNALNKTLNRTVTTTLTAADVILYIIEAGTFGPADQQVMALLPAN 128 Query: 128 VPCILVMNKSDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVN 187 VPCILV+NKSDR KDK+VL+PFAQ++A+ +FA+VVPVSAK RFQLD+LQ EIRK LP N Sbjct: 129 VPCILVINKSDRVKDKAVLLPFAQKIAAMRDFAAVVPVSAKLRFQLDNLQGEIRKHLPAN 188 Query: 188 PPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILV 247 PPMF EDDITDRSEKFLA+EIVREKVFRFVG+ELPYTSTVLIEKFE EG+LRRVFAAILV Sbjct: 189 PPMFGEDDITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFELEGNLRRVFAAILV 248 Query: 248 ERDGHKSMVIGNKGG 262 ERD HKSMVIG KG Sbjct: 249 ERDTHKSMVIGQKGA 263 >ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] gb|ABR89704.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] Length = 300 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/249 (83%), Positives = 229/249 (91%) Query: 14 ALSDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYV 73 ALS +RCGYIAIVGRPNVGKSTLMN LIGAKVSITSRKAQTTRHRITGIQT+ + QFVYV Sbjct: 6 ALSHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYV 65 Query: 74 DTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVPCILV 133 DTPGFQTRHSNALNKTLNRTVT+TLTAADVILYVIEAGTFG AD+QV+ L+P NVPCILV Sbjct: 66 DTPGFQTRHSNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVLDLIPKNVPCILV 125 Query: 134 MNKSDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDE 193 +NKSDR KDK+VL+PFAQ++A++ +F +VVPVSAK RFQL+ LQ EI+K LP PP+F E Sbjct: 126 INKSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLEGLQGEIKKYLPEGPPIFGE 185 Query: 194 DDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILVERDGHK 253 DDITDRSEKFLA+EIVREKVFRFVG+ELPYTSTVLIEKFE EG+LRRVFAAILVERD HK Sbjct: 186 DDITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFEVEGNLRRVFAAILVERDTHK 245 Query: 254 SMVIGNKGG 262 SMVIGNKG Sbjct: 246 SMVIGNKGA 254 >ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] Length = 300 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/248 (82%), Positives = 232/248 (93%) Query: 14 ALSDYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYV 73 ALS +RCGYIAIVGRPNVGKSTLMN LIGAKVSITSRKAQTTRHRITGIQT+++ QFVYV Sbjct: 6 ALSHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQFVYV 65 Query: 74 DTPGFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVPCILV 133 DTPGFQTRHSNALNKTLNRTVT+TLTA+DVIL+VIEAGTFG AD+QV+ L+P NVPCILV Sbjct: 66 DTPGFQTRHSNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLDLIPKNVPCILV 125 Query: 134 MNKSDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDE 193 +NKSDR KDK+VL+PFAQ++A++ +F +VVPVSAK RFQL++LQ EI+K LP NPP+F E Sbjct: 126 INKSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLENLQGEIKKHLPENPPVFGE 185 Query: 194 DDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILVERDGHK 253 DDITDRSEKFLA+EIVREK+FRFVG+ELPYTSTVLIEKFE EG+LRRVFAAILVERD HK Sbjct: 186 DDITDRSEKFLAAEIVREKLFRFVGDELPYTSTVLIEKFELEGNLRRVFAAILVERDTHK 245 Query: 254 SMVIGNKG 261 SMVIGNKG Sbjct: 246 SMVIGNKG 253 >ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] Length = 300 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/293 (71%), Positives = 240/293 (81%), Gaps = 18/293 (6%) Query: 17 DYRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTINNTQFVYVDTP 76 ++RCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQT+ +TQF+YVDTP Sbjct: 9 NFRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQFIYVDTP 68 Query: 77 GFQTRHSNALNKTLNRTVTSTLTAADVILYVIEAGTFGPADKQVMALLPANVPCILVMNK 136 GFQT+H+NALNKTLN+TV +TLT+ADVIL++IEAGTFGPAD+QV+ L+P VPCILV+NK Sbjct: 69 GFQTKHANALNKTLNKTVANTLTSADVILFLIEAGTFGPADQQVLDLIPDTVPCILVINK 128 Query: 137 SDRSKDKSVLMPFAQEVASQHNFASVVPVSAKQRFQLDSLQEEIRKLLPVNPPMFDEDDI 196 SDR KDK+VL+PFAQ++A++H+FA+VVPVSA FQLD LQ+E R+ LP NPP F DDI Sbjct: 129 SDRVKDKAVLLPFAQQIAAKHDFAAVVPVSATLGFQLDGLQKETRRFLPENPPEFGPDDI 188 Query: 197 TDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGDLRRVFAAILVERDGHKSMV 256 TDRSEKFLA+EI+REKVFRFVG+ELPYTSTVLIEKFEQEGDLRRVFAAILVER HKSM+ Sbjct: 189 TDRSEKFLAAEIIREKVFRFVGDELPYTSTVLIEKFEQEGDLRRVFAAILVERSTHKSML 248 Query: 257 IGNKGGGGGGGXVITRRAWTWSACSAAR--------SIW---KSGSRSNPAGL 298 IG KG + T S AR IW KSG N AGL Sbjct: 249 IGQKGAR-------LKEISTQSRLDMARLFGGPVYLEIWVKVKSGWADNEAGL 294