BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0170.p         (240 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiim...   401   e-110
ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter...   395   e-108
ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Mars...   393   e-107
ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum ...   385   e-105
ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] >g...   329   3e-88

>ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans]
 emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/205 (93%), Positives = 199/205 (97%)

Query: 1   MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60
           MD  +LQNRLGH FKDA L+QQALTHRSHSS+HNERLEFLGDSILNCVVASLLFDRY+KI
Sbjct: 1   MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSRLRANLVKQQSLYEIAQRL+LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180
           FLDAGFNAARDVIR+LYIPILD+VDPKTLGKDAKTLLQEYLQGKKI LPQYNVVATHGAA
Sbjct: 121 FLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180

Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205
           HNQEFEIECLVPKL+IQVFGTG SR
Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSR 205


>ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter331]
 gb|AEK62696.1| Ribonuclease III [Collimonas fungivorans Ter331]
          Length = 333

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/205 (93%), Positives = 199/205 (97%)

Query: 1   MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60
           MD ++LQNRLGH FKDATLLQQALTHRSHS+LHNERLEFLGDSILNCVVASLLFDRY KI
Sbjct: 1   MDLMLLQNRLGHTFKDATLLQQALTHRSHSTLHNERLEFLGDSILNCVVASLLFDRYTKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSR+RANLVKQQSLYEIAQRL+LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRVRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180
           FLDAGF+AARDVIR+LYIPILDTVDPKTLGKDAKTLLQEYLQGKKI LPQYNVVATHGAA
Sbjct: 121 FLDAGFDAARDVIRALYIPILDTVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180

Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205
           HNQEFEIECLVPKL+IQVFG G SR
Sbjct: 181 HNQEFEIECLVPKLDIQVFGNGGSR 205


>ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
 gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/205 (91%), Positives = 196/205 (95%)

Query: 1   MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60
           MD  +LQNRLGH FKDA LLQQALTHRSH S+HNERLEFLGDSILNCVVASLLFDRY+KI
Sbjct: 1   MDLTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSRLRANLVKQQSLYEIAQRL+LS FLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180
           FLDAGF+ ARDVIR+LYIPILD+VDPKTLGKDAKTLLQEYLQGKKI LPQYNVVATHGAA
Sbjct: 121 FLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180

Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205
           HNQEFEIECLVPKL+IQVFGTG SR
Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSR 205


>ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1]
 gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/205 (88%), Positives = 198/205 (96%)

Query: 1   MDPLVLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKI 60
           MDP +LQ RLGH FKDA+LLQQALTHRSHS+LHNERLEFLGDS+LNCVVASLLF+RY+KI
Sbjct: 1   MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60

Query: 61  DEGDLSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
           DEGDLSRLRANLVKQQSLYEIAQRL+LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI
Sbjct: 61  DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120

Query: 121 FLDAGFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAA 180
           FLD+GF AAR VIRSLY+P+L+ VDP+TLGKDAKTLLQE+LQGKKIPLPQYNV+ATHGAA
Sbjct: 121 FLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 180

Query: 181 HNQEFEIECLVPKLEIQVFGTGPSR 205
           H+QEFEIECLVPKL+IQVFGTG SR
Sbjct: 181 HSQEFEIECLVPKLDIQVFGTGGSR 205


>ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
 sp|Q46Z18.1|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
          Length = 256

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/201 (77%), Positives = 176/201 (87%)

Query: 5   VLQNRLGHNFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYNKIDEGD 64
            LQ RLG+ F    LLQQALTHRSHS+ HNERLEFLGDS+LNC VA +LF  + K+DEGD
Sbjct: 5   ALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDEGD 64

Query: 65  LSRLRANLVKQQSLYEIAQRLDLSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFLDA 124
           LSR+RANLVKQQ+LYEIAQ L LS+ LRLGEGELKSGGFRRPSILAD LEA+ GA+FLDA
Sbjct: 65  LSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIVGAVFLDA 124

Query: 125 GFNAARDVIRSLYIPILDTVDPKTLGKDAKTLLQEYLQGKKIPLPQYNVVATHGAAHNQE 184
           GF AAR +IR LYIPIL+ VDP+TLGKDAKTLLQEYLQG KI LPQYNV+ATHGAAH+Q+
Sbjct: 125 GFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAAHSQQ 184

Query: 185 FEIECLVPKLEIQVFGTGPSR 205
           FE+EC+VPKLE++VFGTG SR
Sbjct: 185 FEVECMVPKLEVRVFGTGASR 205