BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0165.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353054.1| sigma-E factor negative regulatory protein R... 503 e-140 ref|YP_001100334.1| sigma factor algU regulatory protein mucB [H... 471 e-131 ref|YP_004753525.1| sigma factor RpoE negative regulatory protei... 457 e-126 ref|YP_003775347.1| sigma-E factor regulatory (negative regulato... 423 e-116 ref|XP_002536915.1| Sigma-E factor regulatory protein rseB precu... 420 e-115 >ref|YP_001353054.1| sigma-E factor negative regulatory protein RseB [Janthinobacterium sp. Marseille] gb|ABR89800.1| sigma-E factor negative regulatory protein RseB [Janthinobacterium sp. Marseille] Length = 340 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/356 (67%), Positives = 296/356 (83%), Gaps = 17/356 (4%) Query: 1 MRQTQGLLRVVLFLSAVVAFSAKADVRYSSXPPPPAKAENALPTKVNNNQDAQVLLKKIQ 60 MRQT G + V+ S+V+AF+A+A EN + ++ D QV LKKIQ Sbjct: 1 MRQTLGFFKFVVLFSSVIAFTAQA--------------ENVGASHEHDAHDTQVWLKKIQ 46 Query: 61 SAAQRLNYSGTFVYQQSNQMRTSRITHILSGKNEIEKLEVLDGKPREYIRNNDDVACYVP 120 S+AQ+LNYSGTFVYQQ +Q+RTSRITHI +GKNE+EKLE+LDGKPREYIRNN+++ACYVP Sbjct: 47 SSAQKLNYSGTFVYQQGSQVRTSRITHIFNGKNELEKLEILDGKPREYIRNNEEIACYVP 106 Query: 121 EAKTVLIEKRVTRDVFPAILAANPTDLVDYYSVKMGETGRVAGHDCQAVILEPKDKLRYG 180 E K++ +EKRVT+DVFPAIL A+P DL ++Y++K GETGRVAG+DCQA+ILEPKDKLRYG Sbjct: 107 ENKSIRVEKRVTKDVFPAILGASPADLAEHYNLKKGETGRVAGYDCQAIILEPKDKLRYG 166 Query: 181 YKLWADKATGLLLRAQTFDAKNEVVEQISFTQIEIGNIDHNRVKPSITNTNGWHIENSVM 240 YKLWA+K+TGLLL+AQT + KN+VVEQI+FTQ+ IG+ID +RVK S NT GW +EN+VM Sbjct: 167 YKLWAEKSTGLLLKAQTVNEKNDVVEQIAFTQLSIGHIDPSRVKSSFPNTQGWRVENAVM 226 Query: 241 SQVNLAGWSVTP-PPGFKKIQEVKRLISDTQNTGASATQHGVTTQREVSQIVFSDGLAAI 299 S+ NL+GW+V PPGFKKI+E+KRLI+DT A+A ++ TQREVSQIV+SDGLAAI Sbjct: 227 SETNLSGWTVKDIPPGFKKIREMKRLITDT--APANAAENTPPTQREVSQIVYSDGLAAI 284 Query: 300 SVFIEPGSQSRTEGSMQQGAMNIVGRRQGDYWLTVVGEVPGSAIRQVSNSIEFKSK 355 SVFIE G+QSRTEGSMQQGAMNIVG+RQGDYWLTVVGEVP +AI+QVSNSIEFKSK Sbjct: 285 SVFIESGTQSRTEGSMQQGAMNIVGKRQGDYWLTVVGEVPAAAIKQVSNSIEFKSK 340 >ref|YP_001100334.1| sigma factor algU regulatory protein mucB [Herminiimonas arsenicoxydans] emb|CAL62211.1| Putative negative regulator of sigma E activity [Herminiimonas arsenicoxydans] Length = 338 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/354 (63%), Positives = 283/354 (79%), Gaps = 19/354 (5%) Query: 1 MRQTQGLLRVVLFLSAVVAFSAKADVRYSSXPPPPAKAENALPTKVNNNQDAQVLLKKIQ 60 M+QT G+ R+V+ S+++AF++ A S P A+ QD LKKIQ Sbjct: 1 MQQTLGIFRLVVLFSSLLAFTSHAQ----SVEPSGAQ------------QDTHAWLKKIQ 44 Query: 61 SAAQRLNYSGTFVYQQSNQMRTSRITHILSGKNEIEKLEVLDGKPREYIRNNDDVACYVP 120 S+AQ+L+YSGTFVYQQ N +RTSRITHIL+GKNE+EKLE+LDGKPREYIRNN+++ CYVP Sbjct: 45 SSAQKLSYSGTFVYQQGNHVRTSRITHILNGKNEVEKLEILDGKPREYIRNNEEITCYVP 104 Query: 121 EAKTVLIEKRVTRDVFPAILAANPTDLVDYYSVKMGETGRVAGHDCQAVILEPKDKLRYG 180 E+K++ +EKRVT DVFPAIL A+P DL ++Y +K GETGRVAG DCQA+ILEPKDKLRYG Sbjct: 105 ESKSIRVEKRVTPDVFPAILRASPGDLAEHYKLKKGETGRVAGFDCQAIILEPKDKLRYG 164 Query: 181 YKLWADKATGLLLRAQTFDAKNEVVEQISFTQIEIGNIDHNRVKPSITNTNGWHIENSVM 240 YKLW++K+TGLLL+AQT + KN+VVEQI+FTQ+ IG++D +RVKPS NT+GW +EN+VM Sbjct: 165 YKLWSEKSTGLLLKAQTINEKNDVVEQIAFTQLVIGHVDPSRVKPSFKNTHGWRVENTVM 224 Query: 241 SQVNLAGWSV-TPPPGFKKIQEVKRLISDTQNTGASATQHGVTTQREVSQIVFSDGLAAI 299 S+ ++GWS P GFKKI+E+KRLI+DT + + TQREVSQIV+SDGLAAI Sbjct: 225 SETKISGWSAKNMPAGFKKIREMKRLITDTPANATAG--NAAPTQREVSQIVYSDGLAAI 282 Query: 300 SVFIEPGSQSRTEGSMQQGAMNIVGRRQGDYWLTVVGEVPGSAIRQVSNSIEFK 353 SVFIE SQSRTEGSMQQGAMNIVG+R G++WLTVVGEVP AI+QV+NSIEFK Sbjct: 283 SVFIESASQSRTEGSMQQGAMNIVGKRHGEHWLTVVGEVPAEAIKQVANSIEFK 336 >ref|YP_004753525.1| sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] gb|AEK62702.1| Sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] Length = 346 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/321 (65%), Positives = 267/321 (83%), Gaps = 3/321 (0%) Query: 36 AKAENALPTKVNNNQDAQVLLKKIQSAAQRLNYSGTFVYQQSNQMRTSRITHILSGKNEI 95 A AE+ + Q+AQ LLKKIQSAAQ+LNYSGTF+YQQ+NQ+RTSRITH+L G+NE+ Sbjct: 28 AHAESIDAANAADKQEAQALLKKIQSAAQKLNYSGTFIYQQANQIRTSRITHVLEGRNEV 87 Query: 96 EKLEVLDGKPREYIRNNDDVACYVPEAKTVLIEKRVTRDVFPAILAANPTDLVDYYSVKM 155 EKLE+LDG+PREYIR N+DV Y+PE +T ++EKRVT+D FPAILAA P DL +YY+VK+ Sbjct: 88 EKLEILDGQPREYIRRNEDVTGYMPETRTKIVEKRVTQDGFPAILAALPADLTEYYNVKL 147 Query: 156 GETGRVAGHDCQAVILEPKDKLRYGYKLWADKATGLLLRAQTFDAKNEVVEQISFTQIEI 215 GETGRVAG DCQAV+LEP+D +RYGYKLWA+K +GLLLRAQT + KNE+VEQISFTQI I Sbjct: 148 GETGRVAGFDCQAVLLEPRDNMRYGYKLWAEKISGLLLRAQTLNGKNEIVEQISFTQINI 207 Query: 216 GNIDHNRVKPSITNTNGWHIENSVMSQVNLAGWSVTP-PPGFKKIQEVKRLISDTQNTGA 274 GNID + +KPS NT+ WH ENS+++ NL W+VT PPGFKK++E+KR+++D Sbjct: 208 GNIDRSHLKPSFGNTSSWHTENSLINPANLNEWTVTGMPPGFKKVRELKRMVADAPPAKG 267 Query: 275 SATQHGVTTQREVSQIVFSDGLAAISVFIEPGSQSRTEGSMQQGAMNIVGRRQGDYWLTV 334 + + +REVSQ++FSDGL AIS+FIEPGSQSRTEGS+QQGA+NIVG+RQGDYWLT+ Sbjct: 268 AVGMAAM--RREVSQLIFSDGLVAISIFIEPGSQSRTEGSLQQGALNIVGKRQGDYWLTI 325 Query: 335 VGEVPGSAIRQVSNSIEFKSK 355 VG+VP +A+RQV+NSIE K+K Sbjct: 326 VGDVPPAAMRQVANSIELKNK 346 >ref|YP_003775347.1| sigma-E factor regulatory (negative regulator) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63439.1| sigma-E factor regulatory (negative regulator) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/355 (59%), Positives = 267/355 (75%), Gaps = 17/355 (4%) Query: 1 MRQTQGLLRVVLFLSAVVAFSAKADVRYSSXPPPPAKAENALPTKVNNNQDAQVLLKKIQ 60 MRQT LL V+ L A++ SA A A+ E A + + Q L+K+Q Sbjct: 1 MRQTGRLLGVLCLLPALLLPSAHA-----------AEGEQASASSLLMAQ-----LQKMQ 44 Query: 61 SAAQRLNYSGTFVYQQSNQMRTSRITHILSGKNEIEKLEVLDGKPREYIRNNDDVACYVP 120 S+AQ LNYSG FVYQQ+ +R+SR+TH++ GKNE+EKLE+LDGKP E+IR+ND+VA Y+P Sbjct: 45 SSAQHLNYSGRFVYQQAALIRSSRVTHVVVGKNELEKLELLDGKPAEFIRSNDEVASYLP 104 Query: 121 EAKTVLIEKRVTRDVFPAILAANPTDLVDYYSVKMGETGRVAGHDCQAVILEPKDKLRYG 180 +++T+ +EKRVTRDVFPAI+ P DL Y ++ G RVAG DC+ V+LEP+DKLRYG Sbjct: 105 QSRTIRMEKRVTRDVFPAIVDVRPQDLGAQYHLRAGSDERVAGRDCRVVMLEPRDKLRYG 164 Query: 181 YKLWADKATGLLLRAQTFDAKNEVVEQISFTQIEIGNIDHNRVKPSITNTNGWHIENSVM 240 Y+ W DKATGLLLRAQT D + EV+EQI+FTQIEIG ID RV P+ +T+GWHIE +VM Sbjct: 165 YRFWTDKATGLLLRAQTLDGQGEVIEQIAFTQIEIGGIDRARVNPTYKDTHGWHIEKAVM 224 Query: 241 SQVNLAGWSVTPPPGFKKIQEVKRLISDTQNTGASATQHGVTTQREVSQIVFSDGLAAIS 300 + ++L W VTPPPGF+KIQ+V+RL++ + GA+ Q+ +REVSQIVFSDGLAAIS Sbjct: 225 TPIDLPQWQVTPPPGFRKIQQVRRLMAGSAADGAAPAQN-RAAEREVSQIVFSDGLAAIS 283 Query: 301 VFIEPGSQSRTEGSMQQGAMNIVGRRQGDYWLTVVGEVPGSAIRQVSNSIEFKSK 355 VFIEPGS R EGS QQGAM+I+GR QGDYWLTVVGEVP +AIRQV++SIE KSK Sbjct: 284 VFIEPGSPGREEGSAQQGAMHILGRPQGDYWLTVVGEVPAAAIRQVADSIELKSK 338 >ref|XP_002536915.1| Sigma-E factor regulatory protein rseB precursor, putative [Ricinus communis] gb|EEF25469.1| Sigma-E factor regulatory protein rseB precursor, putative [Ricinus communis] Length = 338 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/355 (58%), Positives = 265/355 (74%), Gaps = 17/355 (4%) Query: 1 MRQTQGLLRVVLFLSAVVAFSAKADVRYSSXPPPPAKAENALPTKVNNNQDAQVLLKKIQ 60 MRQT LL V+ L A++ SA A A+ E A + + Q L+K+Q Sbjct: 1 MRQTGRLLGVLCLLPALLLPSAHA-----------AEGEQASASSLLMAQ-----LQKMQ 44 Query: 61 SAAQRLNYSGTFVYQQSNQMRTSRITHILSGKNEIEKLEVLDGKPREYIRNNDDVACYVP 120 S+AQ LNYSG FVYQQ+ +R+SR+TH++ GKNE+EKLE+LDGKP E+IR+ND+VA Y+P Sbjct: 45 SSAQHLNYSGRFVYQQAALIRSSRVTHVVVGKNELEKLELLDGKPAEFIRSNDEVASYLP 104 Query: 121 EAKTVLIEKRVTRDVFPAILAANPTDLVDYYSVKMGETGRVAGHDCQAVILEPKDKLRYG 180 +++T+ +EKRVTRDVFPAI+ P DL Y ++ G RVAG DC+ V+LEP+DKLRYG Sbjct: 105 QSRTIRMEKRVTRDVFPAIVDVRPQDLGAQYHLRAGSDERVAGRDCRVVMLEPRDKLRYG 164 Query: 181 YKLWADKATGLLLRAQTFDAKNEVVEQISFTQIEIGNIDHNRVKPSITNTNGWHIENSVM 240 Y+ W DKATGLLLRAQT D + EV+EQI+FTQIEIG ID RV P+ +T GWHIE +VM Sbjct: 165 YRFWTDKATGLLLRAQTLDGQGEVIEQIAFTQIEIGGIDRARVNPTYKDTQGWHIEKAVM 224 Query: 241 SQVNLAGWSVTPPPGFKKIQEVKRLISDTQNTGASATQHGVTTQREVSQIVFSDGLAAIS 300 + ++L W VTPPPGF+KIQ+V+RL++ + GA+ Q+ +REVSQIVFSDGLAAIS Sbjct: 225 TPIDLPQWQVTPPPGFRKIQQVRRLMAGSAADGAAPAQN-RAAEREVSQIVFSDGLAAIS 283 Query: 301 VFIEPGSQSRTEGSMQQGAMNIVGRRQGDYWLTVVGEVPGSAIRQVSNSIEFKSK 355 VFIEPGS R EGS QQG M+I+GR QGDYWLTVVGEVP +AIRQV++SIE KSK Sbjct: 284 VFIEPGSPGREEGSAQQGVMHILGRPQGDYWLTVVGEVPAAAIRQVADSIELKSK 338