BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0163.p         (200 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) tra...   390   e-107
ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fung...   382   e-104
ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimo...   379   e-103
ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacter...   379   e-103
ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinoba...   378   e-103

>ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63437.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/200 (96%), Positives = 194/200 (97%)

Query: 1   LTTEREIDQLLVERVQRGDKKAFELLVAKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60
           +TTEREIDQ LVERVQRGDKKAFELLV KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY
Sbjct: 1   MTTEREIDQQLVERVQRGDKKAFELLVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60

Query: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDGEHLRDINT 120
           RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDD +HLRDINT
Sbjct: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDADHLRDINT 120

Query: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180
           PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAM CPIGTVRSRIFRA
Sbjct: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRA 180

Query: 181 REAIAEKLRPLLGTALDKRW 200
           REAIAEKLRPLL TA DKRW
Sbjct: 181 REAIAEKLRPLLDTAADKRW 200


>ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331]
 gb|AEK62704.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331]
          Length = 200

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/200 (93%), Positives = 194/200 (97%)

Query: 1   LTTEREIDQLLVERVQRGDKKAFELLVAKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60
           +TTEREIDQLLVERVQRGDKKAFELLV KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY
Sbjct: 1   MTTEREIDQLLVERVQRGDKKAFELLVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60

Query: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDGEHLRDINT 120
           RALPQFRGDSAFYTWLYRIGINTAKNYLVT GRRAPTSTEA++EEAETFDDGE LRDINT
Sbjct: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRRAPTSTEANSEEAETFDDGEQLRDINT 120

Query: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180
           PES+LATKQIAQTVN AMEALP ELRTAITLREIEGLSYDEIA+AMGCPIGTVRSRIFRA
Sbjct: 121 PESLLATKQIAQTVNTAMEALPAELRTAITLREIEGLSYDEIAEAMGCPIGTVRSRIFRA 180

Query: 181 REAIAEKLRPLLGTALDKRW 200
           REAIA+KLRPLL TA+DKRW
Sbjct: 181 REAIADKLRPLLDTAIDKRW 200


>ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimonas arsenicoxydans]
 emb|CAL62213.1| RNA polymerase sigma-E factor (Sigma-24) [Herminiimonas
           arsenicoxydans]
          Length = 200

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/200 (93%), Positives = 193/200 (96%)

Query: 1   LTTEREIDQLLVERVQRGDKKAFELLVAKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60
           +TTER+IDQLLVERVQRGDKKAFELLV KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY
Sbjct: 1   MTTERDIDQLLVERVQRGDKKAFELLVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60

Query: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDGEHLRDINT 120
           RALPQFRGDSAFYTWLYRIGINTAKNYLVT GRRAPTSTEAD EEAETFDDGEHLRDINT
Sbjct: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRRAPTSTEADIEEAETFDDGEHLRDINT 120

Query: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180
           PES+LATKQIAQT+N+AME LPEELR AITLREIEGLSYDEIA +MGCPIGTVRSRIFRA
Sbjct: 121 PESLLATKQIAQTLNLAMEELPEELRMAITLREIEGLSYDEIAVSMGCPIGTVRSRIFRA 180

Query: 181 REAIAEKLRPLLGTALDKRW 200
           REAI+EKLRPLL TALDKRW
Sbjct: 181 REAISEKLRPLLDTALDKRW 200


>ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33884.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 200

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/200 (92%), Positives = 195/200 (97%)

Query: 1   LTTEREIDQLLVERVQRGDKKAFELLVAKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60
           +TTER+IDQLLVERVQRGDKKAFELLV KYQRKLMRLVSRLVRD AEAEDVVQEAFIKAY
Sbjct: 1   MTTERDIDQLLVERVQRGDKKAFELLVIKYQRKLMRLVSRLVRDHAEAEDVVQEAFIKAY 60

Query: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDGEHLRDINT 120
           RALPQFRGD+AFYTWLYRIGINTAKN+LVT GRRAPTST+ADAEEAETF+D +HLRDINT
Sbjct: 61  RALPQFRGDAAFYTWLYRIGINTAKNFLVTQGRRAPTSTDADAEEAETFEDADHLRDINT 120

Query: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180
           PESMLATKQIA+TVNVAM ALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA
Sbjct: 121 PESMLATKQIAETVNVAMGALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180

Query: 181 REAIAEKLRPLLGTALDKRW 200
           REAIA++LRPLLGTA+DKRW
Sbjct: 181 REAIADRLRPLLGTAIDKRW 200


>ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinobacterium sp. Marseille]
 gb|ABR88960.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium
           sp. Marseille]
          Length = 200

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/200 (92%), Positives = 193/200 (96%)

Query: 1   LTTEREIDQLLVERVQRGDKKAFELLVAKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60
           +TTER+IDQ LVERVQRGDKKAFELLV KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY
Sbjct: 1   MTTERDIDQQLVERVQRGDKKAFELLVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAY 60

Query: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRRAPTSTEADAEEAETFDDGEHLRDINT 120
           RALPQFRGDSAFYTWLYRIGINTAKNYLVT GRRAPTSTEAD EEAETFDDG+HLRDINT
Sbjct: 61  RALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRRAPTSTEADVEEAETFDDGDHLRDINT 120

Query: 121 PESMLATKQIAQTVNVAMEALPEELRTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRA 180
           PES+LATKQIAQT+N+AME LPEELR AITLREIEGLSYDEIA++MGCPIGTVRSRIFRA
Sbjct: 121 PESLLATKQIAQTLNLAMEELPEELRMAITLREIEGLSYDEIAESMGCPIGTVRSRIFRA 180

Query: 181 REAIAEKLRPLLGTALDKRW 200
           REAI+EKLRPLL TALDKRW
Sbjct: 181 REAISEKLRPLLDTALDKRW 200