BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0162.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775344.1| flagellar hook-length control protein [Herba...   146   8e-34
ref|YP_001353051.1| hypothetical protein mma_1361 [Janthinobacte...    88   5e-16
ref|ZP_04575984.1| conserved hypothetical protein [Oxalobacter f...    72   3e-11
ref|YP_001100337.1| hypothetical protein HEAR2072 [Herminiimonas...    69   3e-10

>ref|YP_003775344.1| flagellar hook-length control protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63436.1| flagellar hook-length control protein [Herbaspirillum seropedicae
           SmR1]
          Length = 166

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 100/137 (72%)

Query: 5   AAVAVAFIGVIFAFALVGQLSFVFRMSLAGACIIAAALAFWLMLRNRTTVWLHISGTGQI 64
           A + VA  GV+    L G  S+  R++LA ACIIAA +A   +LR R T+WLHISGTGQI
Sbjct: 22  ACLCVALTGVLLCVWLPGSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQI 81

Query: 65  RLVEHHAVVRAKPGSQVMSGGLAQLLAGSTVWPNLLLLRLRLENGRIRTIPVLPDSVPKE 124
           R+VEH     ++   QVMS GLAQLLAGST+WP +L LRLRLE+G+ RTIPVL DSV ++
Sbjct: 82  RVVEHLLAASSRTKPQVMSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSED 141

Query: 125 TFRALQVACRWVASHNN 141
           TFRAL VACRW+ SHN 
Sbjct: 142 TFRALSVACRWLISHNT 158


>ref|YP_001353051.1| hypothetical protein mma_1361 [Janthinobacterium sp. Marseille]
 gb|ABR91411.1| Hypothetical protein mma_1361 [Janthinobacterium sp. Marseille]
          Length = 164

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 18  FALVGQLSFVFRMSLAGACIIAAALAFWLMLRNRTTVWLHISGTGQIRLVEHHAVVRAKP 77
           FA VG LS + R  LA AC  + +  F+  L++     +HISG+GQIRL+       AKP
Sbjct: 35  FAQVGDLSLMMRSLLAVACFASGSYVFFQTLKSGKIYKIHISGSGQIRLL-------AKP 87

Query: 78  --GSQVMSGG-LAQLLAGSTVWPNLLLLRLRLENGRIRTIPVLPDSVPKETFRALQVACR 134
             G+ +   G L +LL  ST+WP LLLLRL+ E  +   + +LPDSV  E+FRAL VACR
Sbjct: 88  EGGADLADEGELVELLPDSTLWPGLLLLRLQNEGLQTHNVVILPDSVSAESFRALLVACR 147

Query: 135 WVASHNNDA 143
           W+   + DA
Sbjct: 148 WIVMRHADA 156


>ref|ZP_04575984.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO26946.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 166

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 6   AVAVAFIGVIFAFALVGQLSFVFRMSLAGACIIAAALAFWLMLRNRTTVWLHISGTGQIR 65
           AV     GV     L+G+     R+ L  A + A  +  +  +R R T+ + ISG GQIR
Sbjct: 28  AVFFLLTGVSMGGGLLGEFVLYGRIWLTPAFLTAGLMLVFGYVRARKTLRIDISGNGQIR 87

Query: 66  LVEH--HAVVRAKPGSQVMSGGLAQLLAGSTVWPNLLLLRLRLENGRIRTIPVLPDSVPK 123
           L E+  +    ++  +    G +  L+  ST+WP L++L L  E+  +  I +  DS+  
Sbjct: 88  LKEYKGNEFDTSEKKNGFNDGNVWTLMENSTIWPWLIVLNLESESKNVSRILIFFDSMQP 147

Query: 124 ETFRALQVACRWVASHNN 141
           + F+ L  ACRW+ +H  
Sbjct: 148 DDFKVLYAACRWIDAHKK 165


>ref|YP_001100337.1| hypothetical protein HEAR2072 [Herminiimonas arsenicoxydans]
 emb|CAL62214.1| Hypothetical protein; putative membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 166

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 11  FIGVIFAFALVGQLSFVFRMSLAGACIIAAALAFWLMLRNRTTVWLHISGTGQIRLVEHH 70
           FI  + A   +  L    R++L   CI  A   F+ ++  R    +HISGTGQIR+++  
Sbjct: 28  FIAGLIASGRMETLPIAARIALTVMCIAVALHVFFHVMWRRKIYVIHISGTGQIRILQRQ 87

Query: 71  AVVRAKPGSQVMSGGLAQLLAGSTVWPNLLLLRLRLENGRIRTIPVLPDSVPKETFRALQ 130
                  G   + G +  LL  ST+W  LLLL L+ +  +   + +LPDSV   +F+A+ 
Sbjct: 88  K--NGPSGYDSVEGEVVHLLPVSTLWSGLLLLHLQNDQQQTVVVTILPDSVSPASFKAVL 145

Query: 131 VACRWVASHNNDA 143
           +ACRW+ S + D 
Sbjct: 146 LACRWIVSRHADT 158