BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0145.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775331.1| transcription regulator protein [Herbaspiril...   240   6e-62
ref|YP_001099996.1| hypothetical protein HEAR1714 [Herminiimonas...   210   5e-53
ref|YP_001353274.1| transcriptional regulator [Janthinobacterium...   207   6e-52
ref|ZP_02466285.1| hypothetical protein Bpse38_23219 [Burkholder...   185   2e-45
ref|YP_299763.1| MarR family transcriptional regulator [Ralstoni...   184   3e-45

>ref|YP_003775331.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63423.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  240 bits (612), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 133/141 (94%)

Query: 1   MKTPARLQKDDFEALSEFRYQLRRFIRFSEDAAQSEGLTPLQYLLMLHIKGFPGRDWASI 60
           M +P+RLQKDDFEALSEFRYQLRRF+RFSE+AAQSEGLTPLQYLL+LHIKGFPGRDWASI
Sbjct: 1   MTSPSRLQKDDFEALSEFRYQLRRFLRFSEEAAQSEGLTPLQYLLLLHIKGFPGRDWASI 60

Query: 61  SELAERLQSQHHGTVALVTRCEKAGLVTRTQDDKDKRLVQVRLTETGEQYLHRLAQLHRN 120
           SELAERLQSQHHG VALVTRC KAGLVTRT DD+DKRLVQVRLT  GEQYLHRLAQLHRN
Sbjct: 61  SELAERLQSQHHGVVALVTRCVKAGLVTRTPDDRDKRLVQVRLTTLGEQYLHRLAQLHRN 120

Query: 121 ELHSLSSVFQVSHISAFNDRD 141
           EL SLS VFQVSHISAFNDRD
Sbjct: 121 ELQSLSGVFQVSHISAFNDRD 141


>ref|YP_001099996.1| hypothetical protein HEAR1714 [Herminiimonas arsenicoxydans]
 emb|CAL61871.1| putative Bacterial regulatory protein, MarR [Herminiimonas
           arsenicoxydans]
          Length = 144

 Score =  210 bits (535), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 120/139 (86%)

Query: 1   MKTPARLQKDDFEALSEFRYQLRRFIRFSEDAAQSEGLTPLQYLLMLHIKGFPGRDWASI 60
           M     L++ DFEALSEFRYQLRRF+RFSEDAAQS GLTPL YL++LHIKGFPG+DWA++
Sbjct: 1   MTNTPPLEQADFEALSEFRYQLRRFLRFSEDAAQSVGLTPLHYLVLLHIKGFPGQDWATV 60

Query: 61  SELAERLQSQHHGTVALVTRCEKAGLVTRTQDDKDKRLVQVRLTETGEQYLHRLAQLHRN 120
            +LAERLQ+QHHG VALV+RCEKAGLVTR+   +D+R V+VRLTETGE+ L  LA+LHRN
Sbjct: 61  GQLAERLQTQHHGAVALVSRCEKAGLVTRSPGVEDRRQVRVRLTETGEKQLRHLAELHRN 120

Query: 121 ELHSLSSVFQVSHISAFND 139
           EL SLS+VF+V+ ISAFND
Sbjct: 121 ELRSLSNVFKVARISAFND 139


>ref|YP_001353274.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gb|ABR88700.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  207 bits (526), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 117/141 (82%)

Query: 1   MKTPARLQKDDFEALSEFRYQLRRFIRFSEDAAQSEGLTPLQYLLMLHIKGFPGRDWASI 60
           M   A L++ DFEALSEFRYQLRRF++FSEDAAQS GLTPL YL++LHIKGFPG+DWA+I
Sbjct: 1   MSKSAALEQADFEALSEFRYQLRRFLKFSEDAAQSAGLTPLHYLVLLHIKGFPGQDWATI 60

Query: 61  SELAERLQSQHHGTVALVTRCEKAGLVTRTQDDKDKRLVQVRLTETGEQYLHRLAQLHRN 120
            +LAERLQ QHHG VAL++RCEKAGLVTR+    DKR V VRLT  GE+ L  LA+LHRN
Sbjct: 61  GQLAERLQIQHHGAVALISRCEKAGLVTRSPGIHDKRQVCVRLTAVGEKNLRHLAELHRN 120

Query: 121 ELHSLSSVFQVSHISAFNDRD 141
           EL SLS+VF+V+ ISAFND +
Sbjct: 121 ELRSLSNVFKVARISAFNDSE 141


>ref|ZP_02466285.1| hypothetical protein Bpse38_23219 [Burkholderia thailandensis
           MSMB43]
          Length = 137

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 104/135 (77%), Gaps = 1/135 (0%)

Query: 1   MKTPAR-LQKDDFEALSEFRYQLRRFIRFSEDAAQSEGLTPLQYLLMLHIKGFPGRDWAS 59
           M  PAR L+K DFE LSEFRYQ+RRF RFSE AAQSEG+TPLQYLL+LHIKG+P RDWA+
Sbjct: 1   MMKPARELRKTDFEQLSEFRYQMRRFERFSERAAQSEGITPLQYLLLLHIKGYPARDWAT 60

Query: 60  ISELAERLQSQHHGTVALVTRCEKAGLVTRTQDDKDKRLVQVRLTETGEQYLHRLAQLHR 119
           + ELAERLQ+QHHG VALVTRCE  GLV R   D D+R V+V L   GE+ L RLA+LHR
Sbjct: 61  VGELAERLQAQHHGVVALVTRCEALGLVRRRPSDTDRRQVEVHLEAAGERVLARLAELHR 120

Query: 120 NELHSLSSVFQVSHI 134
            EL SL   FQV  I
Sbjct: 121 AELKSLRGAFQVPQI 135


>ref|YP_299763.1| MarR family transcriptional regulator [Ralstonia eutropha JMP134]
 gb|AAZ64919.1| transcriptional regulator, MarR family [Ralstonia eutropha JMP134]
          Length = 151

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 106/133 (79%)

Query: 7   LQKDDFEALSEFRYQLRRFIRFSEDAAQSEGLTPLQYLLMLHIKGFPGRDWASISELAER 66
           L K DFEALS+FRYQLRRF+RFSEDAA++EG+T  QYLLMLHI+G PG++WASI ELAER
Sbjct: 13  LSKLDFEALSDFRYQLRRFLRFSEDAARNEGVTVQQYLLMLHIRGCPGKEWASIGELAER 72

Query: 67  LQSQHHGTVALVTRCEKAGLVTRTQDDKDKRLVQVRLTETGEQYLHRLAQLHRNELHSLS 126
           LQ+Q HG VALV RCE AGLV R  +  D+R+VQV L   GE+ L+RLA LHR EL SL 
Sbjct: 73  LQAQQHGVVALVNRCEAAGLVKRKLNPDDRRVVQVHLLAKGERCLNRLAMLHRTELESLR 132

Query: 127 SVFQVSHISAFND 139
             F+V+ I+AFND
Sbjct: 133 GTFRVARITAFND 145