BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0144.p (575 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspiril... 545 e-152 ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fu... 479 e-133 ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methylove... 367 5e-99 ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium v... 366 5e-99 ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1] ... 338 1e-90 >ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 304/572 (53%), Positives = 396/572 (69%) Query: 1 MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60 MSLNRLF L+S+AL+LLF A +V EW +YR GA SV A+R +L ++A+EK+S ER Sbjct: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 Query: 61 GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120 GP+NA MG A+ +L AR +D AL + +L+ +R + ++ K++ V+QA Sbjct: 61 GPANAFMGASASQREAVADKLKNARAETDAALAALRQALQSHPRLRQSWSLDKVKTVQQA 120 Query: 121 LGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADPEVLDGL 180 L PAR +D+ + +R++ + AV GMV +IP+++ ++LSS ADPE+ +GL Sbjct: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 Query: 181 TGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDIQMRAYK 240 +R AASLREYAGQVGS+FT +I R LT++EVIEIG+LYGRIE LR LL+ QM +Y Sbjct: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMASYV 240 Query: 241 DNPAFRTALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGSILRLRD 300 P F AL +D QYF GF FLD LLQTG+ SG Y + + +L YVP M SI LRD Sbjct: 241 QRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRD 300 Query: 301 AILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLLYLVRQRVLRPVLKATQLVVGL 360 +L D++ +AE +R+A N L+ I +T+ A +FF +L+ L+R+RV++P++ AT LV GL Sbjct: 301 LLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGL 360 Query: 361 AEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNTDFLTG 420 EG D IPQ R++DEI M+RAL VL+ R ER SLA ERE LI QLQ SSNTDFLTG Sbjct: 361 VEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTG 420 Query: 421 VLNRRAFFAHSEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQ 480 VLNRRAFF H +QQ+ +A+RYGR L +VL DIDHFK+ ND+YGH GD ILR Q ++Q Sbjct: 421 VLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQ 480 Query: 481 LLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITASFGV 540 LLRK+DV ARYGGEEFIILLPE+ L Q A +EKLR LA F +D GR I +TASFGV Sbjct: 481 LLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGV 540 Query: 541 TALGTGESLDQLIRQADVALYAAKHKGRNRVE 572 A G L+ LI+QAD+ALY AK GRNRVE Sbjct: 541 AAENGGPGLEHLIKQADIALYRAKKLGRNRVE 572 >ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] gb|AEK60956.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] Length = 590 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 262/571 (45%), Positives = 356/571 (62%) Query: 1 MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60 MSLNRLFWL+S+ LMLLF VL RIV EW Y R +S+ A+R +QL +LA EK++ ER Sbjct: 5 MSLNRLFWLISILLMLLFLVLIGRIVSSEWAVYERSTKSMPAIRNLQLALLAEEKLAAER 64 Query: 61 GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120 GP N+L+ E DA LD+AR SD AL + +L+++A + AP I + + QA Sbjct: 65 GPGNSLLLQEPDAAAKEFAGLDQARFASDRALASLRRALQMQAVPQLAPVIAHVASTEQA 124 Query: 121 LGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADPEVLDGL 180 L R +D + L QR + + M ++ L+ +A+++DP++ DGL Sbjct: 125 LATMRKEMDLLLALPVRQRDVAAVDAVLQMMARADSGFAPAIVALADVAVRSDPQLSDGL 184 Query: 181 TGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDIQMRAYK 240 G +A+SLR AG++G+ FTAPVI RPLT E+ +L G I QL + +++Q+R Y+ Sbjct: 185 EGALLASSLRNIAGRIGAVFTAPVIAHRPLTSQEIYAFSRLSGEISQLYSGIELQLRPYQ 244 Query: 241 DNPAFRTALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGSILRLRD 300 DNP + AL + +Y G G FL+ L G SG Y ++ E+ RYVP M +I LRD Sbjct: 245 DNPVLKAALDAVRDRYLGAGLGFLNELFAIGRSSGDYGLSAREMVVRYVPRMAAIPHLRD 304 Query: 301 AILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLLYLVRQRVLRPVLKATQLVVGL 360 +L +++++A ++RQA L+ A + A F LL+ ++R RVLRP+L AT L V L Sbjct: 305 LVLAEMLQQARRQNRQAAFFLVAATVLGAVALAIFVLLMQVIRLRVLRPILDATDLFVSL 364 Query: 361 AEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNTDFLTG 420 A+ + IP RH DEIG M+R +HVLKA SL ++ L +RE +I QLQ S+TDFLTG Sbjct: 365 ADERFNTVIPMPRHDDEIGVMMRVIHVLKAHSLAKVRLEKQREEMIAQLQTLSDTDFLTG 424 Query: 421 VLNRRAFFAHSEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQ 480 +LNRRAFFA EQQ IAQRY R LTL+L+D+DHFK ND YGH GD +LR + Sbjct: 425 LLNRRAFFAQGEQQFGIAQRYRRQLTLILMDVDHFKTVNDRYGHQAGDQVLRVVADLCRR 484 Query: 481 LLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITASFGV 540 RK+D+ ARYGGEEF+++LPE DL QG A AEKLR + + LD G + +TASFGV Sbjct: 485 HHRKVDLLARYGGEEFLLMLPEIDLSQGFAAAEKLRCAIDSCDCQLDGGEIVNVTASFGV 544 Query: 541 TALGTGESLDQLIRQADVALYAAKHKGRNRV 571 A L+ LI +AD ALY AKH GRN V Sbjct: 545 VAFECDNDLESLIGRADQALYQAKHSGRNMV 575 >ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] gb|EGK72655.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] Length = 578 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 231/575 (40%), Positives = 331/575 (57%), Gaps = 7/575 (1%) Query: 1 MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60 M L+RLFWLV + L + VL+A IV +EWE R R ++A+ ++ ++A E S ER Sbjct: 1 MRLHRLFWLVCLLLAVTVLVLSAHIVALEWERADRATRGLEAIERLRHMLVAAEMASRER 60 Query: 61 GPSNALMGGEGDALPALR-KRLDEARRNSDEALFRVLDSLRLEADVR--YAPAIRKIEAV 117 GPSN LMG A+R RLDEAR +D A + +L R + A+R EA Sbjct: 61 GPSNGLMGDITPGGDAVRLARLDEARARTDAAFSTLQQALDASGHRRDDVSAAVR--EAA 118 Query: 118 RQALGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADPEVL 177 R L R + + + +R + +I A+ M +I L + L + A A P Sbjct: 119 RD-LSAGRGEISRIALQPRSERRADDIKAAIGRMFQVIEDLSPGLMHLMNEAQAAYPRAS 177 Query: 178 DGLTGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDIQMR 237 D L+G R+AA LRE AG++GS+FT + R+PL +E EI +L GR+EQLR LL + Sbjct: 178 DALSGARLAAELREQAGRLGSQFTVALTARQPLRDSERTEIERLRGRVEQLRQLLVQRTA 237 Query: 238 AYKDNPAFRTALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGSILR 297 A + A A + +YFG PF++ L G G Y+++ A AARYVP M +I+ Sbjct: 238 AAPERTAVHGATQRMLVRYFGSAMPFVEALTVRGRSDGEYDIDAAGFAARYVPDMDAIIE 297 Query: 298 LRDAILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLLYLVRQRVLRPVLKATQLV 357 LRD +L + EA + +A L+ L A L L++V RV+RP+ + T+L+ Sbjct: 298 LRDVLLEQALTEARVGAAEARTALVWISGGGLAALGLLGLTLWVVHHRVVRPLEETTELI 357 Query: 358 VGLAEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNTDF 417 V +A G+ + +P RH+DE+ D+L+A+ VL+ S+ R +L ER+ L+EQL+ SNTDF Sbjct: 358 VAIACGDLERTVPVPRHRDEVADVLKAIGVLRENSVARRALEDERQRLVEQLRDQSNTDF 417 Query: 418 LTGVLNRRAFFAHSEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQK 477 LTG+ NRR FF +E+ L QR+G + + L DIDHFK+ ND++GH VGD +L + Sbjct: 418 LTGLPNRRGFFTLAERHLPNLQRHGYPVAIALFDIDHFKQVNDSWGHAVGDVVLGEVARC 477 Query: 478 IAQLLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITAS 537 Q R+ DV ARYGGEEFI+L+P DL A AE+LRV + + D + +TAS Sbjct: 478 CQQHSRRGDVIARYGGEEFILLMPHCDLASATAQAERLRVAIESTVMQAGDAGGLKVTAS 537 Query: 538 FGVT-ALGTGESLDQLIRQADVALYAAKHKGRNRV 571 FGV L ++LD +I +AD LY AK +GRNRV Sbjct: 538 FGVAECLLEDDTLDPVIARADACLYRAKREGRNRV 572 >ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472] gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 573 Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 220/572 (38%), Positives = 334/572 (58%), Gaps = 5/572 (0%) Query: 1 MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60 M L+++F +V++ L +L + A IV EW YR + ++++ L M+A+EK+S ER Sbjct: 1 MRLSKIFTVVTLVLFVLACLPLAWIVNGEWAVYRAADEGLASIQIAHLAMVAVEKISFER 60 Query: 61 GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120 GP+N L+G D R+RL AR+ SD AL ++ +L + + A+ + + RQ Sbjct: 61 GPANVLIGSPADQ--DARERLRRARQTSDRALQDLVSALSPSSSAYHRQALAAVRSARQR 118 Query: 121 LGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADPEVLDGL 180 L AR +D+ + + +S I ++ M ++P ++ +V LSS A P++ L Sbjct: 119 LSEARLGMDRVIA--SPRPASAGIMPSIRRMFDVVPAILEAVTALSSQASSVYPQLSHPL 176 Query: 181 TGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDIQMRAYK 240 +G R+A LREYAG++GS T + +RPL ++E +I L GRIEQLR + ++ A Sbjct: 177 SGARMATELREYAGRLGSTLTPALAEQRPLAESETRDIHILRGRIEQLRGTILQRLNAPS 236 Query: 241 DNPAFRTALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGSILRLRD 300 P R A+ D+++ YF +G +D +L L Y V+ AE A YVP + SI+ LRD Sbjct: 237 LQPGPRQAVGDMESLYFREGLAQVDDILLDSHLGRPYRVSLAEFTAGYVPTLYSIVELRD 296 Query: 301 AILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLLYLVRQRVLRPVLKATQLVVGL 360 A+L EA ++ AF L+G I + + A I L +R + RP+L A++L+ L Sbjct: 297 AMLTAAAEEARVQRSAAFRHLLGTIALGVVALIAQLALFAYIRWLIARPLLAASRLLSDL 356 Query: 361 AEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNTDFLTG 420 A+G DA IP + KDEIGD+LRA+ +L+ S E+ +L ER+ LI++L S DFLTG Sbjct: 357 ADGKLDADIPDSHRKDEIGDVLRAIAILRRNSQEKRALEHERQRLIDELTEMSRIDFLTG 416 Query: 421 VLNRRAFFAHSEQQLAIAQRYGRNLTLVLLDIDHFKRFNDNYGHLVGDDILRNAVQKIAQ 480 + NRRAF + ++A A + TL+L DIDHFK+ ND YGH GD +L + + + Sbjct: 417 ITNRRAFTQAAHAEIARAGLARESATLILFDIDHFKQVNDLYGHDCGDAVLVHVAAIVER 476 Query: 481 LLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIGITASFGV 540 + R+ D+ RYGGEEF++L G A+AE+LR +A L G+++ +TASFGV Sbjct: 477 VCREGDLAGRYGGEEFVVLACYRGASNGEALAERLRAAIAESPCLLPSGQKLAVTASFGV 536 Query: 541 TALG-TGESLDQLIRQADVALYAAKHKGRNRV 571 LG SL++L++ AD ALYAAK GRNRV Sbjct: 537 ATLGEAAPSLERLLQAADRALYAAKRLGRNRV 568 >ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gb|EFG69781.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 591 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 223/580 (38%), Positives = 330/580 (56%), Gaps = 18/580 (3%) Query: 1 MSLNRLFWL-VSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIE 59 MS++R F + V+VAL+ + VL R+V+ EW AY ++ A + + +LA+E VS E Sbjct: 9 MSIDRRFSISVAVALLPVL-VLCGRLVVHEWHAYMVADGALYAFQTYRAGLLAIESVSAE 67 Query: 60 RGPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQ 119 RGP+N+++G + A R L AR SD + ++L+ L+ A + +I+ R Sbjct: 68 RGPTNSVLGEDLPIPEARRVSLRRARDESDARIEKLLEMLQAGRCPGCAVELARIQEARN 127 Query: 120 ALGPARDRVDQQVGLVKWQRSSREITEAVDGMVALIPMLVSSVADLSSIAIQADPEVLDG 179 L AR+ VDQ +GL QR R ++ AVD M+ +IP ++ L++ ++ D L+ Sbjct: 128 DLASARENVDQLIGLPLAQRRERTLSNAVDRMIKVIPQFAPAIDALAANVVKGDTRALNC 187 Query: 180 LTGMRVAASLREYAGQVGSKFTAPVIMRRPLTKNEVIEIGKLYGRIEQLRTLLDIQMRAY 239 L + A LRE AGQ+GS FTA + R L ++ + I + GRI+QLR L+D +R Sbjct: 188 LILATLTADLREAAGQLGSHFTATLTAHRTLGEDNQLVIERTEGRIDQLRELIDSHVR-- 245 Query: 240 KDNPAFR-TALSDLDTQYFGQGFPFLDGLLQTGLLSGSYEVNTAELAARYVPPMGSILRL 298 D P TA ++ QYFG+G ++ + G ++ A+LA RYVP M I Sbjct: 246 -DRPTLESTAFDKMNRQYFGEGIAYIAEVRSLASRPGGVAISPAQLADRYVPMMRPITAF 304 Query: 299 RDAILVDLIREAEIRHRQAFNLLIGAITMTLFAFIFFFLLL---YLVRQRVLRPVLKATQ 355 RD +L DL E EI H ++ L + A++ L AF+ +LL L R+RV+RP++ AT Sbjct: 305 RDQVL-DLA-ETEIGHHRSNALGLLAVS-GLAAFLLIAILLSMAMLFRRRVIRPLVDATH 361 Query: 356 LVVGLAEGNHDAPIPQARHKDEIGDMLRALHVLKARSLERISLAGERETLIEQLQLSSNT 415 ++ +A G+ A IP AR++ EI M A+ VLKA S+ER L ER LI +L+ ++ T Sbjct: 362 VIGAIANGDLTAEIPAARYRGEIKAMFNAIGVLKANSVERQQLERERGRLIHELKATAET 421 Query: 416 DFLTGVLNRRAFFAHSEQQLAIAQRYGRN--LTLVLLDIDHFKRFNDNYGHLVGDDILRN 473 DFLT +LNRRAF S +L+ A+R L L++ DIDHFK+ ND YGH GD L+ Sbjct: 422 DFLTHLLNRRAF--ESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQL 479 Query: 474 AVQKIAQLLRKMDVFARYGGEEFIILLPEADLEQGIAVAEKLRVMLATQAFALDDGREIG 533 + ++ R+ DV AR+GGEEF +L D Q +AVAE+LR ++ G Sbjct: 480 VARLCREICRQSDVVARWGGEEFAVLSRVQDAAQALAVAERLRRRISETRIPFSGGEGFT 539 Query: 534 ITASFGVTALGTGES--LDQLIRQADVALYAAKHKGRNRV 571 ITASFGV +S +D+L R+AD LY AK GR+R+ Sbjct: 540 ITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI 579