BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0143.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fu...    93   1e-17
ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspiril...    87   8e-16
ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium v...    71   4e-11
emb|CCA88996.1| conserved exported hypothetical protein, GGDEF d...    65   5e-09
emb|CCA80133.1| conserved exported hypothetical protein, GGDEF d...    64   1e-08

>ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331]
 gb|AEK60956.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331]
          Length = 590

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 81/129 (62%)

Query: 1   MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60
           MSLNRLFWL+S+ LMLLF VL  RIV  EW  Y R  +S+ A+R +QL +LA EK++ ER
Sbjct: 5   MSLNRLFWLISILLMLLFLVLIGRIVSSEWAVYERSTKSMPAIRNLQLALLAEEKLAAER 64

Query: 61  GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120
           GP N+L+  E DA       LD+AR  SD AL  +  +L+++A  + AP I  + +  QA
Sbjct: 65  GPGNSLLLQEPDAAAKEFAGLDQARFASDRALASLRRALQMQAVPQLAPVIAHVASTEQA 124

Query: 121 LGPARDRVD 129
           L   R  +D
Sbjct: 125 LATMRKEMD 133


>ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 83/129 (64%)

Query: 1   MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60
           MSLNRLF L+S+AL+LLF   A  +V  EW +YR GA SV A+R  +L ++A+EK+S ER
Sbjct: 1   MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60

Query: 61  GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120
           GP+NA MG       A+  +L  AR  +D AL  +  +L+    +R + ++ K++ V+QA
Sbjct: 61  GPANAFMGASASQREAVADKLKNARAETDAALAALRQALQSHPRLRQSWSLDKVKTVQQA 120

Query: 121 LGPARDRVD 129
           L PAR  +D
Sbjct: 121 LEPARAAID 129


>ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472]
 gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 573

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 1   MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60
           M L+++F +V++ L +L  +  A IV  EW  YR     + ++++  L M+A+EK+S ER
Sbjct: 1   MRLSKIFTVVTLVLFVLACLPLAWIVNGEWAVYRAADEGLASIQIAHLAMVAVEKISFER 60

Query: 61  GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120
           GP+N L+G   D     R+RL  AR+ SD AL  ++ +L   +   +  A+  + + RQ 
Sbjct: 61  GPANVLIGSPADQ--DARERLRRARQTSDRALQDLVSALSPSSSAYHRQALAAVRSARQR 118

Query: 121 LGPAR---DRV 128
           L  AR   DRV
Sbjct: 119 LSEARLGMDRV 129


>emb|CCA88996.1| conserved exported hypothetical protein, GGDEF domain [Ralstonia
           syzygii R24]
          Length = 592

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%)

Query: 1   MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60
           MSL++ F L++ ++++   +L+  ++  EW AY R   ++ + R ++  +LA+EKVS ER
Sbjct: 1   MSLDKRFGLIAASILIPILLLSCWLLAYEWLAYLRADDALCSFRSLRAALLAIEKVSAER 60

Query: 61  GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120
            P+N ++G +     + R  L  AR++SD  L ++LD LR E     A  +     ++  
Sbjct: 61  RPTNGVLGEDAPVPASHRTALLRARQDSDGHLAQLLDILRPEHCPGCAADLDTARHLQAG 120

Query: 121 LGPARDRVDQ 130
           L  AR  VDQ
Sbjct: 121 LAAARANVDQ 130


>emb|CCA80133.1| conserved exported hypothetical protein, GGDEF domain [blood
           disease bacterium R229]
          Length = 595

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 72/130 (55%)

Query: 1   MSLNRLFWLVSVALMLLFSVLAARIVLIEWEAYRRGARSVDAVRVVQLTMLAMEKVSIER 60
           MSL++ F L++ ++++   +L+  ++  EW AY R   ++ + R ++  + AMEKVS ER
Sbjct: 9   MSLDKRFGLIAASILIPILLLSCWLLAYEWLAYLRADDALRSFRSLRAALQAMEKVSAER 68

Query: 61  GPSNALMGGEGDALPALRKRLDEARRNSDEALFRVLDSLRLEADVRYAPAIRKIEAVRQA 120
            P+N ++G +     + +  L  AR++SD  L ++LD LR E     A  +     ++  
Sbjct: 69  RPTNGVLGEDAPVAASHQTALLRARQDSDGHLAQLLDILRPEHCPGCAADLDTARGLQAG 128

Query: 121 LGPARDRVDQ 130
           L  AR  VDQ
Sbjct: 129 LAAARANVDQ 138