BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0126.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide ... 303 3e-80 ref|YP_002006739.1| branched-chain amino acid ABC transporter su... 269 4e-70 ref|YP_004751762.1| extracellular ligand-binding receptor [Colli... 268 8e-70 ref|YP_727735.1| ABC-type transporter, periplasmic component [Ra... 268 8e-70 ref|YP_004687021.1| ABC transporter permease [Cupriavidus necato... 268 1e-69 >ref|YP_004754303.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] gb|AEK63480.1| putative LEU/ILE/VAL-binding signal peptide protein [Collimonas fungivorans Ter331] Length = 424 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 220/328 (67%), Gaps = 3/328 (0%) Query: 19 GAKVYFDKINRQGGVHGRRIELLTRDDQYTASLAAYNTRQLIGQDRVFALFGFVGWPTSQ 78 GAK YFD +N QGGV GR+IE++ DD+Y A LAA NT++LI +D VFALFG+VG PTS Sbjct: 98 GAKAYFDSVNEQGGVFGRQIEIIKADDKYEADLAAANTKRLIEKDDVFALFGYVGTPTSN 157 Query: 79 AGLQIASRARVPFFAPFTGG-ALHTSFDRYLFSIRASYVDEHAYFLRNMNGLGIRKLALV 137 A L I ++A VPFFAP TG +L +R +F+IRASY DE + + + +GI+ +A+ Sbjct: 158 AALPIFTQAGVPFFAPVTGAQSLREPLNRQVFNIRASYFDETEHLVEKLANVGIKNIAVF 217 Query: 138 YQQDQYGVSIKQDIENRARREAIELT-SISINHAGVNLTPLIDKTLAAQVDVVMLVNADY 196 YQ D YG + + ++ ++ +EL + ++ ++ + K L + ++ ++A Y Sbjct: 218 YQNDAYGRAGLEGVQRALKKMNLELVEAATVERNSTDVKGAVSKILPKRPAAIIQISA-Y 276 Query: 197 QINARIVHGLRSRGFLGQFFAVSFVGTKQLASELGDMAHGILVTQVVPLPWRISMPLVAE 256 A + +R G+ GQF+ VSFVG++ LA LG G++++QVVP PW S P++AE Sbjct: 277 ASCAAYIKEMRKAGYNGQFYNVSFVGSQALADALGKDGEGVVISQVVPFPWSSSTPVLAE 336 Query: 257 YRKSMAEAGYEEFTVTSLEGYIAARVLVEGFRRTGRNLTRERLIRALEGINARNYDGGGY 316 Y K M +AG +E +SLEG+IAA+V VEG +R G++LTR +L++ALE IN +NY+GGG+ Sbjct: 337 YTKLMQKAGVKEPNFSSLEGFIAAKVFVEGLKRAGKDLTRAKLVKALETINMKNYNGGGF 396 Query: 317 VVNFSPTNHLGSMYVDIATMTKDARFMN 344 VNFS +NH GS +V++ +TKD +F+N Sbjct: 397 DVNFSGSNHSGSKFVEMTMITKDKKFLN 424 >ref|YP_002006739.1| branched-chain amino acid ABC transporter substrate-binding protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ70678.1| putative ABC-type branched-chain amino acid transporter, periplasmic binding component [Cupriavidus taiwanensis LMG 19424] Length = 400 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 148/350 (42%), Positives = 222/350 (63%), Gaps = 15/350 (4%) Query: 1 MSGTTAHYARQALXQALIGAKVYFDKINRQGGVHGRRIELLTRDDQYTASLAAYNTRQLI 60 ++G TA +Q GA++YFD IN+QGG+HGR+I L DD Y AA NT++LI Sbjct: 58 LTGPTAVLGKQMNS----GARLYFDHINQQGGIHGRKIRLEALDDYYEPEPAARNTKKLI 113 Query: 61 GQDRVFALFGFVGWPTSQAGLQIASRARVPFFAPFTGG-ALHTSFDRYLFSIRASYVDEH 119 +DRVFALFG+VG PTSQA L +A +ARVPFF P+TG +L RY+F +RA Y +E Sbjct: 114 EEDRVFALFGYVGTPTSQAALPLAIQARVPFFGPYTGAQSLRDPRSRYVFHVRAGYNEET 173 Query: 120 AYFLRNMNGLGIRKLALVYQQDQYGVSIKQDIENRARREAIELTSISINHAGV--NLTPL 177 A +R + G++++A+VY +D YG + +E RA + A + + V N T + Sbjct: 174 AAIVRQIQTTGLKRVAVVYNEDAYGKAGLDGLE-RALKAAPDSGVQIVAREPVVRNTTEI 232 Query: 178 IDK---TLAAQVDVVMLVNADYQINARIVHGLRSRGFLGQFFAVSFVGTKQLASELGDMA 234 D ++ A+ D V++++A A + LR RG+ GQF+ VSFVGT+ LA+E+G Sbjct: 233 GDAMQGSMKAKPDAVVMISAYRTAGAFVKEALR-RGYNGQFYNVSFVGTQALANEVGAQG 291 Query: 235 HGILVTQVVPLPWRISMPLVAEYRKSMAEAGY-EEFTVTSLEGYIAARVLVEGFRRTGRN 293 G++++QV+P P ++P+V EY + + AG EF S+EG+IAA+ EG RR G++ Sbjct: 292 SGVIISQVMPHPGNATLPIVREYLRLLQAAGKPSEFDYASIEGFIAAKTFTEGLRRAGKD 351 Query: 294 LTRERLIRALEGINARNYDGGGYVVNFSPTNHLGSMYVDIATMTKDARFM 343 LTRE+L+ ALE + RNYD GG++VNF+P NH+GS +V++ + + + Sbjct: 352 LTREKLVTALESM--RNYDLGGFIVNFTPENHVGSKFVEMTIINSKGQVI 399 >ref|YP_004751762.1| extracellular ligand-binding receptor [Collimonas fungivorans Ter331] gb|AEK60939.1| Extracellular ligand-binding receptor [Collimonas fungivorans Ter331] Length = 376 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 139/328 (42%), Positives = 207/328 (63%), Gaps = 5/328 (1%) Query: 19 GAKVYFDKINRQGGVHGRRIELLTRDDQYTASLAAYNTRQLIGQDRVFALFGFVGWPTSQ 78 GA+ YFD++N GGV GR+I L T DD Y AA NTRQ I QD V ALFG+VG PTS Sbjct: 52 GAQAYFDQVNASGGVFGRKIILKTLDDGYEPDRAAANTRQFIEQDDVLALFGYVGTPTSN 111 Query: 79 AGLQIASRARVPFFAPFTGG-ALHTSFDRYLFSIRASYVDEHAYFLRNMNGLGIRKLALV 137 A + I ++A+VPFFAPFTG +L F+R +F+IRASY E ++ + L ++K+A+ Sbjct: 112 ASIPILTKAKVPFFAPFTGAQSLREPFNRNIFNIRASYFAETEKIVQQITTLSLKKIAVF 171 Query: 138 YQQDQYGVSIKQDIENRARREAIELTSI-SINHAGVNLTPLIDKTLAAQVDVVMLVNADY 196 YQ D YG + + + ++ IE+ + ++ V+++ + K +Q V++V+A Y Sbjct: 172 YQNDAYGKAGLEGVTRALKKRGIEVAGLGTVERNSVDVSAAVAKIRQSQPQTVIMVSA-Y 230 Query: 197 QINARIVHGLRSRGFLGQFFAVSFVGTKQLASELGDMAHGILVTQVVPLPWRISMPLVAE 256 +A + + + G F+ +SFVG++QL + LG A G+ + QV+P PW +V E Sbjct: 231 NSSAAFIKAMIAAGSPPSFWNISFVGSQQLVNALGKDASGVQIAQVMPAPWDEVNGIVKE 290 Query: 257 YRKSMAEAGYEEFTVTSLEGYIAARVLVEGFRRTGRNLTRERLIRALEGINARNYDGGGY 316 YRK + G E+ S+EG+IAA+VLVEG +R G +L+RE L++ALE IN +YD GGY Sbjct: 291 YRKYYLQDGKREWDYVSMEGFIAAKVLVEGLKRAGSSLSRESLVKALETIN--HYDAGGY 348 Query: 317 VVNFSPTNHLGSMYVDIATMTKDARFMN 344 V FSP++H GS +VD+ + K RF++ Sbjct: 349 FVTFSPSSHNGSEFVDLTMVAKSGRFLH 376 >ref|YP_727735.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] emb|CAJ94367.1| ABC-type transporter, periplasmic component [Ralstonia eutropha H16] Length = 400 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 145/356 (40%), Positives = 219/356 (61%), Gaps = 27/356 (7%) Query: 1 MSGTTAHYARQALXQALIGAKVYFDKINRQGGVHGRRIELLTRDDQYTASLAAYNTRQLI 60 ++G TA +Q GA++YFD IN+QGG+HGR+I L DD Y AA NTR+LI Sbjct: 58 LTGPTAVLGKQMNS----GARLYFDHINQQGGIHGRKIRLEALDDYYEPEPAARNTRKLI 113 Query: 61 GQDRVFALFGFVGWPTSQAGLQIASRARVPFFAPFTGG-ALHTSFDRYLFSIRASYVDEH 119 +DRVFALFG+VG PTSQA L +A +ARVPFF P+TG +L RY+F +RA Y +E Sbjct: 114 EEDRVFALFGYVGTPTSQAALPLAIQARVPFFGPYTGAQSLREPRSRYVFHVRAGYNEET 173 Query: 120 AYFLRNMNGLGIRKLALVYQQDQYGVSIKQDIENRAR-----------REAIELTSISIN 168 A LR + G++++A+VY +D YG + +E + RE + + I Sbjct: 174 AAILRQIQTTGLKRVAVVYNEDAYGKAGLDGLERALKAAPDSGVQIVAREPVVRNTTEIG 233 Query: 169 HAGVNLTPLIDKTLAAQVDVVMLVNADYQINARIVHGLRSRGFLGQFFAVSFVGTKQLAS 228 A I ++ A+ D V++++A A + LR RG+ GQF+ VSFVGT+ LA+ Sbjct: 234 DA-------IQGSIKARPDAVVMISAYRTAGAFVKEALR-RGYNGQFYNVSFVGTQALAN 285 Query: 229 ELGDMAHGILVTQVVPLPWRISMPLVAEYRKSMAEAGY-EEFTVTSLEGYIAARVLVEGF 287 E+G G++++QV+P P ++P+V EY + + AG EF S+EG+I+A+ EG Sbjct: 286 EVGAQGSGVIISQVMPHPGNATLPIVREYLRLLQAAGKPSEFDYASIEGFISAKTFTEGL 345 Query: 288 RRTGRNLTRERLIRALEGINARNYDGGGYVVNFSPTNHLGSMYVDIATMTKDARFM 343 RR G++LTRE+L+ ALE + R+YD GG+++NF+P NH+GS +V++ + + + Sbjct: 346 RRAGKDLTREKLVTALESM--RSYDLGGFIINFTPENHVGSKFVEMTIINSKGQVI 399 >ref|YP_004687021.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI78540.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 400 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/356 (40%), Positives = 220/356 (61%), Gaps = 27/356 (7%) Query: 1 MSGTTAHYARQALXQALIGAKVYFDKINRQGGVHGRRIELLTRDDQYTASLAAYNTRQLI 60 ++G TA +Q GA++YFD IN+QGG++GR+I L DD Y AA NT++LI Sbjct: 58 LTGPTAVLGKQMNS----GARLYFDHINQQGGIYGRKIRLEALDDYYEPEPAARNTKKLI 113 Query: 61 GQDRVFALFGFVGWPTSQAGLQIASRARVPFFAPFTGG-ALHTSFDRYLFSIRASYVDEH 119 +DRVFALFG+VG PTSQA L +A++A+VPFF P+TG +L RY+F +RA Y +E Sbjct: 114 EEDRVFALFGYVGTPTSQAALPLATQAKVPFFGPYTGAQSLREPRSRYVFHVRAGYNEET 173 Query: 120 AYFLRNMNGLGIRKLALVYQQDQYGVSIKQDIENRAR-----------REAIELTSISIN 168 A LR + G+R++A+VY +D YG + + +E + RE + + I Sbjct: 174 AAILRQIQTTGLRRVAVVYNEDAYGKAGLEGLERALKAAPDSGVQIVAREPVVRNTTEIG 233 Query: 169 HAGVNLTPLIDKTLAAQVDVVMLVNADYQINARIVHGLRSRGFLGQFFAVSFVGTKQLAS 228 A I ++ + D V++++A A + LR RG+ GQF+ VSFVGT+ LA+ Sbjct: 234 DA-------IQGSMKTRPDAVVMISAYRTAGAFVKEALR-RGYSGQFYNVSFVGTQALAN 285 Query: 229 ELGDMAHGILVTQVVPLPWRISMPLVAEYRKSMAEAGY-EEFTVTSLEGYIAARVLVEGF 287 E+G G++++QV+P P ++P+V EY + + AG EF S+EG+IAA+ EG Sbjct: 286 EVGAQGSGVIISQVMPHPGNATLPIVREYLRMLQAAGKPSEFDYASIEGFIAAKAFTEGL 345 Query: 288 RRTGRNLTRERLIRALEGINARNYDGGGYVVNFSPTNHLGSMYVDIATMTKDARFM 343 RR G++LTRE+L+ ALE + R+YD GG++VNF+P NH+GS +V++ + + + Sbjct: 346 RRAGKDLTREKLVTALESM--RSYDLGGFIVNFTPENHVGSKFVEMTIINSKGQVI 399