BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0112.p (388 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776328.1| amino acid ABC transporter periplasmic prote... 698 0.0 ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, ... 673 0.0 gb|EGW60816.1| Extracellular ligand-binding receptor [Dechloroso... 520 e-145 ref|ZP_06685734.1| branched chain amino acid ABC superfamily ATP... 487 e-135 gb|EGP45824.1| receptor family ligand binding region family prot... 486 e-135 >ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19672.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ64420.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/388 (89%), Positives = 367/388 (94%), Gaps = 3/388 (0%) Query: 1 MRFNMLKTALKTLPALMIGVTMANAALAADVKLGLAAALTGPAAKYGVAIKNGFTLAADE 60 M+FN T LKT+PAL+IG T++ AALAAD+KLG+A ALTGPAAKYGVAIKNGFTLA++E Sbjct: 1 MQFN---TMLKTIPALLIGATLSQAALAADIKLGVAEALTGPAAKYGVAIKNGFTLASEE 57 Query: 61 VNAKGGVNGNKLVLIAEDEQGKKEEAINVFKKLIFQDKVLMVFGPTLSNSAFAADPIANA 120 +NAKGGVNG+KL L+ EDEQGKKEEAINVFKKLIFQDKVL VFGPTLSNSAFAADPIANA Sbjct: 58 INAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANA 117 Query: 121 AKVVAFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFT 180 AKVV FGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFT Sbjct: 118 AKVVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFT 177 Query: 181 KSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIIL 240 KSGYDVFKATLE QKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIIL Sbjct: 178 KSGYDVFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIIL 237 Query: 241 QTRTLGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSSENLTPANKAFIAAYKAKFG 300 QTR LGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWS+EN TPANKAFI AYKAKFG Sbjct: 238 QTRALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFITAYKAKFG 297 Query: 301 SDPDQFSAQAYDALYVVVEALKNVKLSGALDKDRDALRQALPAVKIDGATGKFAFRAAPA 360 +DPDQF+AQAYDA+Y+V +ALKNVKLSG L KDRDALR ALPAVKIDGATGKFAFRAAPA Sbjct: 298 ADPDQFAAQAYDAMYIVADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRAAPA 357 Query: 361 VAGKQVGFDAQQEAVVSIAKGGKFTLLK 388 VAGKQVGFDA QEA+V+IAKGGKF LLK Sbjct: 358 VAGKQVGFDADQEAIVNIAKGGKFVLLK 385 >ref|YP_004753586.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK62763.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 385 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/388 (86%), Positives = 359/388 (92%), Gaps = 3/388 (0%) Query: 1 MRFNMLKTALKTLPALMIGVTMANAALAADVKLGLAAALTGPAAKYGVAIKNGFTLAADE 60 M+F KT LKTLP LM+ +A+AA AADVKLGLAAALTGPAAKYGVAIKNGF+LAADE Sbjct: 1 MQF---KTILKTLPLLMLASGLASAAHAADVKLGLAAALTGPAAKYGVAIKNGFSLAADE 57 Query: 61 VNAKGGVNGNKLVLIAEDEQGKKEEAINVFKKLIFQDKVLMVFGPTLSNSAFAADPIANA 120 VNA GGVNGNKL+L+ EDEQGKKEEAINVFKKLIF+DK L+VFGPTLSNSAFAADPIANA Sbjct: 58 VNAAGGVNGNKLLLVIEDEQGKKEEAINVFKKLIFKDKALLVFGPTLSNSAFAADPIANA 117 Query: 121 AKVVAFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFT 180 AKVVAFGTSNTADGITAMGPFTFRNSVMEADVLPVT +AAVKHFGIKKVA+IYGNDDAFT Sbjct: 118 AKVVAFGTSNTADGITAMGPFTFRNSVMEADVLPVTTRAAVKHFGIKKVAIIYGNDDAFT 177 Query: 181 KSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIIL 240 KSGYDVFK TL QKIPVTTTEAYAKGDVDFKAQLTKIKA NPDAIVCSCL EEAANIIL Sbjct: 178 KSGYDVFKGTLADQKIPVTTTEAYAKGDVDFKAQLTKIKASNPDAIVCSCLTEEAANIIL 237 Query: 241 QTRTLGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSSENLTPANKAFIAAYKAKFG 300 QTR LGMKQPFIGGNGLNSPKLF+IAK AGD+T+MGSPWSSENLTPANKAFIAAYKAKFG Sbjct: 238 QTRALGMKQPFIGGNGLNSPKLFDIAKGAGDDTIMGSPWSSENLTPANKAFIAAYKAKFG 297 Query: 301 SDPDQFSAQAYDALYVVVEALKNVKLSGALDKDRDALRQALPAVKIDGATGKFAFRAAPA 360 SDPDQF+AQAYDAL+VV ALK +KLSGALDKDR AL+QALPAV IDGATGKFAFR AP Sbjct: 298 SDPDQFAAQAYDALHVVAAALKKIKLSGALDKDRIALQQALPAVTIDGATGKFAFRKAPP 357 Query: 361 VAGKQVGFDAQQEAVVSIAKGGKFTLLK 388 V GK+VG+DAQQEA+V+IAKGGKF LLK Sbjct: 358 VTGKEVGYDAQQEAIVNIAKGGKFILLK 385 >gb|EGW60816.1| Extracellular ligand-binding receptor [Dechlorosoma suillum PS] Length = 384 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/356 (71%), Positives = 296/356 (83%) Query: 30 DVKLGLAAALTGPAAKYGVAIKNGFTLAADEVNAKGGVNGNKLVLIAEDEQGKKEEAINV 89 D+K+G+AAALTG AA+YGVAI+NGF LAADE+NAKGGVNGNK+ L+ EDEQGKKEE INV Sbjct: 24 DIKIGVAAALTGGAAQYGVAIRNGFQLAADEINAKGGVNGNKIQLVVEDEQGKKEEGINV 83 Query: 90 FKKLIFQDKVLMVFGPTLSNSAFAADPIANAAKVVAFGTSNTADGITAMGPFTFRNSVME 149 FKKLIFQDKVLMVFGPTLSNS FAA P+AN AK V FGTS TA+GIT +GP+ FRNSVME Sbjct: 84 FKKLIFQDKVLMVFGPTLSNSMFAAGPVANGAKTVVFGTSVTANGITDIGPYVFRNSVME 143 Query: 150 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 209 +DVLPVTV A KH+ +K+VAVIYGNDDAFTKSGYDVFK LE QK+PVTTTE Y KGDV Sbjct: 144 SDVLPVTVATATKHYKLKQVAVIYGNDDAFTKSGYDVFKKVLEDQKLPVTTTETYVKGDV 203 Query: 210 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRTLGMKQPFIGGNGLNSPKLFEIAKDA 269 DFKAQLTKIKA NPDA++CSCLAEEAANI+LQ R LG+K PFIGGNG NSPKLFEI+K A Sbjct: 204 DFKAQLTKIKASNPDAVICSCLAEEAANIMLQARGLGIKVPFIGGNGFNSPKLFEISKLA 263 Query: 270 GDNTLMGSPWSSENLTPANKAFIAAYKAKFGSDPDQFSAQAYDALYVVVEALKNVKLSGA 329 G+ T +GSPWS+ N PANKAF+AAY K+ ++P+QF+AQA+DAL+V AL+ VKLSG Sbjct: 264 GEGTFVGSPWSNTNPAPANKAFVAAYVKKYNAEPNQFAAQAFDALHVAAAALQEVKLSGD 323 Query: 330 LDKDRDALRQALPAVKIDGATGKFAFRAAPAVAGKQVGFDAQQEAVVSIAKGGKFT 385 + DR+AL+ ALP I+GATG F FR A +GK G+DA Q+ + + KGGKFT Sbjct: 324 IAADREALKNALPKATINGATGPFKFRPAVTKSGKPGGWDADQKPFIYVVKGGKFT 379 >ref|ZP_06685734.1| branched chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF77269.1| branched chain amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 409 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 249/384 (64%), Positives = 291/384 (75%), Gaps = 1/384 (0%) Query: 6 LKTALKTLPALMIGVTMANAALAADVKLGLAAALTGPAAKYGVAIKNGFTLAADEVNAKG 65 +++ K L A +I + AA AAD+KLG+A AL+G AA+YGV+I+NGF LAADE+NA G Sbjct: 26 MQSKTKKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINAAG 85 Query: 66 GVNGNKLVLIAEDEQGKKEEAINVFKKLIFQDKVLMVFGPTLSNSAFAADPIANAAKVVA 125 G+NGNKLVL+ EDEQGKKEEAINVFKKLIF+D VLMVFGPTLSNSA AADPIA AAK VA Sbjct: 86 GINGNKLVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPIAQAAKTVA 145 Query: 126 FGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYD 185 FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSGYD Sbjct: 146 FGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSGYD 205 Query: 186 VFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRTL 245 FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R L Sbjct: 206 NFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQARQL 265 Query: 246 GMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSSENLTPANKAFIAAYKAKFGSDPD 304 G+ P IGGNG+NS K+F++A N L +GSPWS EN P N FI AYKAKF PD Sbjct: 266 GLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGSPD 325 Query: 305 QFSAQAYDALYVVVEALKNVKLSGALDKDRDALRQALPAVKIDGATGKFAFRAAPAVAGK 364 QF+AQ+YDA+Y+V +ALKN K++G L KDR ALR ALPAV GATG F FR A AGK Sbjct: 326 QFAAQSYDAMYIVAQALKNTKITGELPKDRAALRDALPAVTWTGATGPFKFRQANDRAGK 385 Query: 365 QVGFDAQQEAVVSIAKGGKFTLLK 388 G+DA Q +VS+ K GK+ + K Sbjct: 386 PAGYDADQAPIVSVTKDGKYVIEK 409 >gb|EGP45824.1| receptor family ligand binding region family protein 7 [Achromobacter xylosoxidans AXX-A] Length = 384 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/384 (64%), Positives = 292/384 (76%), Gaps = 1/384 (0%) Query: 6 LKTALKTLPALMIGVTMANAALAADVKLGLAAALTGPAAKYGVAIKNGFTLAADEVNAKG 65 +++ K L A +I + AA AAD+KLG+A AL+G AA+YGV+I+NGF LAADE+NA G Sbjct: 1 MQSKTKKLLAALIAAGIVPAAHAADIKLGVAEALSGGAAQYGVSIRNGFQLAADEINAAG 60 Query: 66 GVNGNKLVLIAEDEQGKKEEAINVFKKLIFQDKVLMVFGPTLSNSAFAADPIANAAKVVA 125 G+NGNK+VL+ EDEQGKKEEAINVFKKLIF+D VLMVFGPTLSNSA AADP+A AAK VA Sbjct: 61 GINGNKIVLVVEDEQGKKEEAINVFKKLIFKDNVLMVFGPTLSNSAQAADPVAQAAKTVA 120 Query: 126 FGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYD 185 FGTSNTADGIT++G + FRNSV EADVLP T+ G+K VAV+YGNDD FTKSGYD Sbjct: 121 FGTSNTADGITSIGNYVFRNSVTEADVLPATISTVKAKTGLKNVAVLYGNDDVFTKSGYD 180 Query: 186 VFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRTL 245 FK LE QKIPVTTTE +AKGDVDFKAQLTKIK NPDAIV S L E A I++Q R L Sbjct: 181 NFKKALEDQKIPVTTTETFAKGDVDFKAQLTKIKGTNPDAIVLSALLAEGAPIMVQARQL 240 Query: 246 GMKQPFIGGNGLNSPKLFEIAKDAGDNTL-MGSPWSSENLTPANKAFIAAYKAKFGSDPD 304 G+ P IGGNG+NS K+F++A N L +GSPWS EN P N FI AYKAKF PD Sbjct: 241 GLNVPVIGGNGMNSVKIFDLAPGGASNNLWIGSPWSIENKAPENVKFIDAYKAKFNGAPD 300 Query: 305 QFSAQAYDALYVVVEALKNVKLSGALDKDRDALRQALPAVKIDGATGKFAFRAAPAVAGK 364 QF+AQ+YDA+Y+V +ALKN K+SG L KDR ALR ALP+V+ GATG F FR A AGK Sbjct: 301 QFAAQSYDAMYIVAQALKNTKISGELAKDRAALRDALPSVQWTGATGAFKFRQATDRAGK 360 Query: 365 QVGFDAQQEAVVSIAKGGKFTLLK 388 G+DA Q +VS+ K GK+ + K Sbjct: 361 PAGYDADQAPIVSVTKDGKYVIEK 384