BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0110.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776330.1| amino acid ABC transporter permease [Herbasp... 483 e-134 ref|ZP_08275460.1| LivM [Oxalobacteraceae bacterium IMCC9480] >g... 450 e-124 ref|YP_004753588.1| putative amino-acid transmembrane ABC transp... 442 e-122 emb|CBJ39675.1| leucine/isoleucine/valine transporter permease s... 394 e-108 ref|ZP_00946687.1| LivM [Ralstonia solanacearum UW551] >gi|20773... 393 e-107 >ref|YP_003776330.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64422.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/296 (89%), Positives = 279/296 (94%), Gaps = 8/296 (2%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEWWDGFWATYNTVIFS+GVNAMLALSIYVTLSCGLLSLANAAFMGIGAY ASL+TMQ Sbjct: 1 MEWWDGFWATYNTVIFSIGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYTASLLTMQFE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEITGGPMGL 123 +PFP+ALAAGGVLPALVAL+IGIPTLRLSGVYLAMATLGFGEVVRV+VLN++ITGGPMGL Sbjct: 61 MPFPIALAAGGVLPALVALVIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDITGGPMGL 120 Query: 124 NGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NGVPP+TEWWHIVLLLGVT+Y LAR+RRSKIGRAFEAIKEDE+AARLMGVNVAGYKLLAF Sbjct: 121 NGVPPITEWWHIVLLLGVTIYVLARLRRSKIGRAFEAIKEDEIAARLMGVNVAGYKLLAF 180 Query: 184 VIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 VIGAAIAGVAG LNAH+TFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP Sbjct: 181 VIGAAIAGVAGGLNAHFTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 240 Query: 244 EVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGNSNNSASKKVN 299 EVLRHFKDFRLA NGLILILVVLYLPKGIWDPRRIRAF+ R +A KKV Sbjct: 241 EVLRHFKDFRLAINGLILILVVLYLPKGIWDPRRIRAFLGR--------NAEKKVK 288 >ref|ZP_08275460.1| LivM [Oxalobacteraceae bacterium IMCC9480] gb|EGF31071.1| LivM [Oxalobacteraceae bacterium IMCC9480] Length = 289 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/288 (78%), Positives = 258/288 (89%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEWW FW+TYNTVIFS+GVNAMLALSIY+TLSCGLLSLANAAFMGIGAY A+++TMQ Sbjct: 1 MEWWQAFWSTYNTVIFSIGVNAMLALSIYLTLSCGLLSLANAAFMGIGAYAAAMLTMQGD 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEITGGPMGL 123 + FP+AL A GVLPALVAL+IGIPTLRLSGVYLAMATLGFGEVVRV+VLN+++TGGPMGL Sbjct: 61 VSFPLALLAAGVLPALVALIIGIPTLRLSGVYLAMATLGFGEVVRVIVLNLDVTGGPMGL 120 Query: 124 NGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLAF 183 NG+P TE+WHI+LLL +T+Y LAR+RRSKIGRAFEAIK DEVAA+LMG+NVAGYKLLAF Sbjct: 121 NGIPLKTEFWHILLLLALTLYVLARMRRSKIGRAFEAIKADEVAAQLMGINVAGYKLLAF 180 Query: 184 VIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLLP 243 V GA IAGVAG LNAHYTFTIGP NY FENAVDILTMAVFGGT+NLIGP +G+TIL+LLP Sbjct: 181 VTGAVIAGVAGGLNAHYTFTIGPGNYAFENAVDILTMAVFGGTANLIGPTLGATILTLLP 240 Query: 244 EVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGNSN 291 EVLR FK FRLA NGLILI+V+LYLPKGIWDP R+RA +R ++ Sbjct: 241 EVLREFKHFRLAFNGLILIVVILYLPKGIWDPARMRALFKRTSTSKKE 288 >ref|YP_004753588.1| putative amino-acid transmembrane ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK62765.1| putative amino-acid transmembrane ABC transporter protein [Collimonas fungivorans Ter331] Length = 303 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 241/296 (81%), Positives = 262/296 (88%), Gaps = 4/296 (1%) Query: 1 MGFMEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITM 60 +GF++WWDGFW+TYNTVIF +GVNAMLALSIYVTLSCGLLSLANAAFMGIGAY ASLI+M Sbjct: 8 LGFIDWWDGFWSTYNTVIFGLGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYAASLISM 67 Query: 61 QAGLPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEITGGP 120 Q GLPFPVALA GG LPALVAL+IGIPTLRLSGVYLAMATLGFGEVVRV+VLNM+ITGGP Sbjct: 68 QTGLPFPVALAIGGALPALVALIIGIPTLRLSGVYLAMATLGFGEVVRVIVLNMDITGGP 127 Query: 121 MGLNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKL 180 +GLNG+P TEWWHIVLLL T+Y LAR+RRSKIGRAFEAIKEDEVAARLMGVNVAGYKL Sbjct: 128 LGLNGIPLKTEWWHIVLLLAATLYILARIRRSKIGRAFEAIKEDEVAARLMGVNVAGYKL 187 Query: 181 LAFVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILS 240 LAFVIGAAIAGVAG LNAHYTFTIGP NY FENAV+ILTMAVFGGTS LIGP IG +L+ Sbjct: 188 LAFVIGAAIAGVAGGLNAHYTFTIGPGNYAFENAVEILTMAVFGGTSTLIGPTIGGMVLT 247 Query: 241 LLPEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIR----AFMQRRNSGNSNN 292 LLPE LR F +R NGLIL+LV+LYLPKGIWDPRRIR AF +R+ NN Sbjct: 248 LLPEALRDFNSYRAVVNGLILVLVILYLPKGIWDPRRIRAWVNAFSRRKAQAGGNN 303 >emb|CBJ39675.1| leucine/isoleucine/valine transporter permease subunit (transmembrane abc transporter) [Ralstonia solanacearum CMR15] Length = 299 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/296 (66%), Positives = 244/296 (82%), Gaps = 2/296 (0%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAY ++L+TM A Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNMEI-TGGPMG 122 +PFPVAL G + PA+VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVVIGRPTLRLSGVYLAMATLGFGEVVRVLILNTESWTGGALG 120 Query: 123 LNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK+GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARLRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 FV+GA IAG+AGALNAH TF IGP+ +GF+ V+ILTMA+ GGTS L GP++GS ILSLL Sbjct: 181 FVLGAMIAGLAGALNAHLTFFIGPSEFGFDRGVEILTMAILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRI-RAFMQRRNSGNSNNSASKK 297 PE+LR FKDFRL NGLIL+L+VL+LPKGIWDP R R F +R SA+ Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWFGMKRGGTMPGASAASN 296 >ref|ZP_00946687.1| LivM [Ralstonia solanacearum UW551] ref|YP_002256920.1| amino-acid transmembrane protein [Ralstonia solanacearum IPO1609] gb|EAP70832.1| LivM [Ralstonia solanacearum UW551] emb|CAQ58801.1| amino-acid transmembrane protein [Ralstonia solanacearum IPO1609] Length = 299 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/287 (66%), Positives = 239/287 (83%), Gaps = 1/287 (0%) Query: 4 MEWWDGFWATYNTVIFSVGVNAMLALSIYVTLSCGLLSLANAAFMGIGAYVASLITMQAG 63 MEW+D FW+ Y+ ++ ++G+NA+LALSIY+TLSCGLL++ANAAFMGIGAY ++L+TM A Sbjct: 1 MEWFDNFWSVYSNLVLTLGINALLALSIYLTLSCGLLAMANAAFMGIGAYTSALLTMNAE 60 Query: 64 LPFPVALAAGGVLPALVALLIGIPTLRLSGVYLAMATLGFGEVVRVVVLNME-ITGGPMG 122 +PFPVAL G + PA+VA++IG PTLRLSGVYLAMATLGFGEVVRV++LN E TGG +G Sbjct: 61 MPFPVALLGGMLAPAVVAVIIGRPTLRLSGVYLAMATLGFGEVVRVLILNTENWTGGALG 120 Query: 123 LNGVPPVTEWWHIVLLLGVTVYFLARVRRSKIGRAFEAIKEDEVAARLMGVNVAGYKLLA 182 LNG+P +TEWWH+ L + +T++ LAR+RRSK+GRAFEAIKEDE AA LMG+NVAG KLLA Sbjct: 121 LNGIPQLTEWWHVALAVALTLFVLARMRRSKVGRAFEAIKEDETAAGLMGINVAGTKLLA 180 Query: 183 FVIGAAIAGVAGALNAHYTFTIGPNNYGFENAVDILTMAVFGGTSNLIGPMIGSTILSLL 242 F +GA IAG+AGALNAH TF IGPN +GF+ V+ILTM + GGTS L GP++GS ILSLL Sbjct: 181 FTLGAVIAGLAGALNAHLTFFIGPNEFGFDRGVEILTMTILGGTSGLTGPVLGSVILSLL 240 Query: 243 PEVLRHFKDFRLAANGLILILVVLYLPKGIWDPRRIRAFMQRRNSGN 289 PE+LR FKDFRL NGLIL+L+VL+LPKGIWDP R ++ + G Sbjct: 241 PELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPARFARWLGMKRGGT 287