BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0107.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspiri... 715 0.0 ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas... 699 0.0 ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinob... 679 0.0 ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimo... 673 0.0 ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralst... 634 e-179 >ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/503 (70%), Positives = 398/503 (79%), Gaps = 11/503 (2%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 MP FD SLVWFRRDLR+ DHAALY AL QS+QV CVFV+D DIL AL A+G+ DRRIDF Sbjct: 1 MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 ++A +AELD ALR G LIV H A IPALAAEL V AV+ N DYE Sbjct: 61 LLASVAELDEALRHA-----------GGGLIVLHGSAVTQIPALAAELDVQAVYANTDYE 109 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 P A++RDAAV + L K G QLL+ KDQVIFEKDEVL+ + +PFSVFTPYKNAWM+KL+ Sbjct: 110 PAAVERDAAVAQTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAA 169 Query: 181 GGDFYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLED 240 GDF+LKPYPV+ YL LA P K ALP+ QLGF PSNL++L+IPTGMSGA LL++ Sbjct: 170 DGDFFLKPYPVEKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDE 229 Query: 241 FLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSE 300 FL R+G YG RDFPAVKGPSYLSVHLRFGTISIRTLARAA+ AM G+G GA VWLSE Sbjct: 230 FLDRIGSYGAARDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSE 289 Query: 301 LVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQ 360 L WRDFYFMIL HHPRV +FK +YDAIQWE G A +FA WCEGRTGYPLVDAAM Q Sbjct: 290 LTWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQ 349 Query: 361 LNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDA 420 +NQ+GYMHNRLRMV ASFLTKDLGIDWRWGE+YFA LNDFDL+ANNGGWQWASSSGCDA Sbjct: 350 INQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDA 409 Query: 421 QPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDY 480 QPYFRIFNP+TQSEKFD +GKFIRRYLPQLA L +K IHAPW D AGV +G++Y Sbjct: 410 QPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNY 469 Query: 481 PEPMVDHAEARKRTLLRYAVVKK 503 P P+VDHA+AR+RTL RYAVVKK Sbjct: 470 PRPIVDHAQARERTLARYAVVKK 492 >ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331] Length = 510 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/502 (67%), Positives = 395/502 (78%), Gaps = 11/502 (2%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 MP F+ SLVWFRRDLR+ DHAAL+ ALK S V CVFV+D DIL LL GL ADRR++F Sbjct: 15 MPQFEKSLVWFRRDLRMSDHAALHHALKNSAAVFCVFVFDTDILQPLLDAGLGADRRVEF 74 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 I + ELD LR L G L+VRH PA IPALA +LGV+AVF+NHDYE Sbjct: 75 IRGSVTELDLELRK-----------LGGGLLVRHGPAHDVIPALARQLGVNAVFSNHDYE 123 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 PQA +RDA V + L DGR + KDQVIFE +EVL++AG+PFSVFTPYKNAWM +L+ Sbjct: 124 PQARQRDAGVARTLAADGRAWHSYKDQVIFECEEVLTMAGQPFSVFTPYKNAWMKRLAAA 183 Query: 181 GGDFYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLED 240 G F+LKPYP++ Y A+LAPP + +P+L LGF +NL++L+I GMSGA LLED Sbjct: 184 DGSFFLKPYPIEKYAARLAPPPSSPPEKIPSLAALGFKKTNLRELKIAPGMSGACGLLED 243 Query: 241 FLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSE 300 F+PRLG+YG +RDFPAVKGPSYLS+HLRFGTISIRTLAR A A+ G GA +WLSE Sbjct: 244 FMPRLGQYGQSRDFPAVKGPSYLSIHLRFGTISIRTLARLAYQALHQGAAAGGAAIWLSE 303 Query: 301 LVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQ 360 L+WRDFYFMIL HHP V +FK +YDAI+WE G+ A +F WC+GRTGYPLVDAAMLQ Sbjct: 304 LIWRDFYFMILHHHPHVAGAAFKPEYDAIRWESGERAHSLFLAWCDGRTGYPLVDAAMLQ 363 Query: 361 LNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDA 420 LNQ+GYMHNRLRMVTASFL KDLGIDWRWGE+YFA+ LNDFDL+ANNGGWQWA+SSGCDA Sbjct: 364 LNQSGYMHNRLRMVTASFLIKDLGIDWRWGERYFAERLNDFDLAANNGGWQWAASSGCDA 423 Query: 421 QPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDY 480 QPYFRIFNPITQSEKFDA+GKFIRRYLPQL+ L D+HIHAPWL PA L+ AG+R+G+DY Sbjct: 424 QPYFRIFNPITQSEKFDADGKFIRRYLPQLSALGDRHIHAPWLAPAQELERAGIRLGQDY 483 Query: 481 PEPMVDHAEARKRTLLRYAVVK 502 P P+V H EARK TL RYAVVK Sbjct: 484 PLPLVQHDEARKATLQRYAVVK 505 >ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille] Length = 495 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/509 (66%), Positives = 383/509 (75%), Gaps = 16/509 (3%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 MP F+ +LVWFRRDLR DHAAL+ AL+Q +QV+C F++DR ILD L + DRR++F Sbjct: 1 MPLFEKTLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPS----TDRRVEF 56 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 I A + ELD ALRA L G LIVRHA A+Q IP LAAELGVDAVF NHDYE Sbjct: 57 IHASLQELDTALRA-----------LGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYE 105 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 PQAI RD AV L DGR+L T KD VIFEKDEVLS +G+PFSVFTPYKNAW+ KL Sbjct: 106 PQAIARDGAVAAALATDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTE 165 Query: 181 GGDFYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLED 240 + Y +D A AP + +P L +LGF +NL +L IPTGM G L +D Sbjct: 166 LAPADMPAYEIDTLRAHFAP-LPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDD 224 Query: 241 FLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWLSE 300 F+ R+ Y TRDFPAVKGPSYLSVHLRFGT+SIR L R A+DAMRIG G GA VWLSE Sbjct: 225 FIDRMPDYDSTRDFPAVKGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVWLSE 284 Query: 301 LVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQ 360 LVWRDFYFMIL+ HP V ER+FK DYDAI WE G HA E+F WC+GRTGYPLVDAAM Q Sbjct: 285 LVWRDFYFMILYQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQ 344 Query: 361 LNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDA 420 LNQTGYMHNRLRMVTASFL KDLGIDWRWGE+YFA+ LNDFDL+ANNGGWQWASSSGCDA Sbjct: 345 LNQTGYMHNRLRMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDA 404 Query: 421 QPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDY 480 QPYFRIFNP+TQSEKFD +GKFIRRYLPQL L K IHAPW PA L+ AG+ +G+DY Sbjct: 405 QPYFRIFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDY 464 Query: 481 PEPMVDHAEARKRTLLRYAVVKKDLGDED 509 P P++ H EAR RTLLRYAVVKK ++D Sbjct: 465 PHPLLQHDEARARTLLRYAVVKKVTVEDD 493 >ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans] Length = 493 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/505 (67%), Positives = 385/505 (76%), Gaps = 20/505 (3%) Query: 1 MPTFDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDF 60 M F+ +LVWFRRDLR DHAAL+ AL QS+QV+CVF++DR ILDAL +ADRR++F Sbjct: 1 MLRFEKTLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALP----RADRRVEF 56 Query: 61 IMACIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYE 120 I A + EL ALRA L G LIV+HA A+ IP LA ELGVDAVF NHDYE Sbjct: 57 IHASLLELAQALRA-----------LGGGLIVQHAWAETAIPELAIELGVDAVFANHDYE 105 Query: 121 PQAIKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGP 180 PQAI RDA V L+ GR L T KDQV+FEK+EVL+ A +PFSVFTPYKNAW+ KL Sbjct: 106 PQAITRDAHVAAALQAAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAE 165 Query: 181 GGDFYLKPYPVDAYLAQLA--PPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLL 238 + L+PY +DAY + P SK +P+L LGF +NL DL IPTGM GA LL Sbjct: 166 SNEATLRPYEIDAYADRFVNLPESKF---PIPSLTDLGFEKTNLPDLNIPTGMQGAQDLL 222 Query: 239 EDFLPRLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDAMRIGEGRRGAPVWL 298 + F R+ +Y TRDFPA+KGPSYLSVH+RFGT+SIR LAR A+DAMR G G GA VWL Sbjct: 223 DAFADRMQRYDQTRDFPALKGPSYLSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWL 282 Query: 299 SELVWRDFYFMILFHHPRVVERSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAM 358 SELVWRDFYFMILF HP VV+ +FKADYDAI WE G HAR +F WC+G+TGYPLVDAAM Sbjct: 283 SELVWRDFYFMILFQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAM 342 Query: 359 LQLNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGC 418 QLNQTGYMHNRLRMVTASFL KDLGIDWRWGE YFA+ LNDFDL+ANNGGWQWASSSGC Sbjct: 343 AQLNQTGYMHNRLRMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGC 402 Query: 419 DAQPYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGK 478 DAQPYFRIFNPITQSEKFD +GKFIRRYLPQLA L D+HIHAPW PA L+ AGV IG Sbjct: 403 DAQPYFRIFNPITQSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGN 462 Query: 479 DYPEPMVDHAEARKRTLLRYAVVKK 503 +YP P+V H EAR RTL RYAVVKK Sbjct: 463 NYPGPLVQHDEARARTLQRYAVVKK 487 >ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha JMP134] Length = 525 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 317/502 (63%), Positives = 370/502 (73%), Gaps = 17/502 (3%) Query: 4 FDSSLVWFRRDLRIGDHAALYDALKQSKQVHCVFVYDRDILDALLADGLQADRRIDFIMA 63 FD LVWFRRDLR DHAAL+ ALK ++V CVFV+DRDILD LLA GL+ DRR+DFI A Sbjct: 33 FDRGLVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLARGLKGDRRVDFIRA 92 Query: 64 CIAELDAALRAXMACIAELDAALRGALIVRHAPAQQDIPALAAELGVDAVFTNHDYEPQA 123 + ELDA LRA G LIV + A IPALA ELGV AVF NHDYEP A Sbjct: 93 SLIELDATLRAAG-----------GGLIVMNDSAASAIPALARELGVQAVFANHDYEPDA 141 Query: 124 IKRDAAVKKQLEKDGRQLLTCKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGPGGD 183 + RDAAV+ L D R L T KDQVIFE+DE+L+ G+PF+VFTPYKNAW+ + Sbjct: 142 VARDAAVRDSLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQ----P 197 Query: 184 FYLKPYPVDAYLAQLAPPSKKHHKALPTLEQLGFTPSNLKDLRIPTGMSGAAQLLEDFLP 243 F L+PYP++ YL LAP K LP+LE LGF PSNL ++ +PTG SG L E+F Sbjct: 198 FDLRPYPIEPYLHALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS 257 Query: 244 RLGKYGDTRDFPAVKGPSYLSVHLRFGTISIRTLARAAVDA-MRIGEGRRGAPVWLSELV 302 R+G YG RD+PA++GPSYLSVHLRFGT+SIRTLARAA A +R G GA WLSELV Sbjct: 258 RMGDYGRRRDYPALRGPSYLSVHLRFGTVSIRTLARAAHGAVLRGGADSAGAATWLSELV 317 Query: 303 WRDFYFMILFHHPRVVE-RSFKADYDAIQWEGGKHAREMFAKWCEGRTGYPLVDAAMLQL 361 WRDFYFMIL HHPRV +F YD I+W G+ F W + TGYPLVDAAMLQ+ Sbjct: 318 WRDFYFMILHHHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQI 377 Query: 362 NQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDAQ 421 Q+GYMHNRLRMVTASFL KDLG+DWR GE YFAD LNDFD +ANNGGWQWA+S+GCDAQ Sbjct: 378 RQSGYMHNRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQ 437 Query: 422 PYFRIFNPITQSEKFDAEGKFIRRYLPQLAGLPDKHIHAPWLCPADVLKAAGVRIGKDYP 481 P+FRIFNP+TQSEKFD +G+FIR+YLPQLA LPDK++HAPW P DVL AAGVR+G++YP Sbjct: 438 PWFRIFNPVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYP 497 Query: 482 EPMVDHAEARKRTLLRYAVVKK 503 P+V H ARK TL RYAVVK+ Sbjct: 498 RPLVQHDVARKETLERYAVVKE 519