BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0101.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane pr... 444 e-123 ref|YP_002980501.1| Cache sensor-containing methyl-accepting che... 331 1e-88 ref|ZP_07675424.1| methyl-accepting chemotaxis protein [Ralstoni... 323 3e-86 ref|YP_001898123.1| Cache sensor-containing methyl-accepting che... 320 2e-85 emb|CBJ39043.1| putative methyl-accepting chemotaxis protein tra... 317 2e-84 >ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66009.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/319 (71%), Positives = 279/319 (87%), Gaps = 4/319 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 +TKPYTDV T+KPMVSFTA V ++G GVVAAA+FLDGVS+VV+++HPTPASFAFLVDR Sbjct: 134 LTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPTPASFAFLVDR 193 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 DG+MLAHPD QW+NKP K+WN+ELT ERLN+LA AD AS E++L GAAKLV+ V +K Sbjct: 194 DGLMLAHPDGQWVNKPAKEWNAELTPERLNALA---ADDKAS-EVMLEGAAKLVKGVPIK 249 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GTEWTL++A+DKADV AG+R+A++S+LIA+VLVA +AA I+ LITTAVF+RLS+VR AMD Sbjct: 250 GTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQRLSRVRRAMD 309 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 ++ SG+GDLT+RL EDG DEV+QI+RSFN FV +IT ILQ++R +SD VK+SS+EIA+GN Sbjct: 310 NLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISSTEIATGN 369 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 DLS RTEQQAG+LEETASAMEELTSTV+QNS+NAR+AN+LA AS IA +GGEVVGNVV Sbjct: 370 QDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQGGEVVGNVV 429 Query: 301 ATMEAINQSSRQIVDIIGV 319 +TMEAIN SSRQI DII V Sbjct: 430 STMEAINASSRQIADIITV 448 >ref|YP_002980501.1| Cache sensor-containing methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12D] gb|ACS61829.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Ralstonia pickettii 12D] Length = 608 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 176/321 (54%), Positives = 231/321 (71%), Gaps = 8/321 (2%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 VT PY V T + +V+F + + L+GV+ V +D V VKA+HPTPASF FLV+ Sbjct: 142 VTPPYVSVSTGQLVVTFAVPILEGSTLKGVIGGDVAMDSVIANVKAIHPTPASFGFLVNA 201 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASK--EIVLNGAAKLVQAVA 118 G ++AHP+ + KPV D ++ L L SLA A K E+ ++GAAKL+ Sbjct: 202 AGKIVAHPNDKLTLKPVTDLSAGLNEATLASLAQ------AEKPVEVAVDGAAKLLYRQG 255 Query: 119 VKGTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNA 178 VKGT+W L+VA+DK+D AGMR +S+ A+V VA +AALI+G +T+ FRRLS +R+A Sbjct: 256 VKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTSRAFRRLSMIRDA 315 Query: 179 MDSIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIAS 238 MD IGSG GDLT RLP DG+DEV+QIARSFN F K+TA++Q+IR SD+V+ ++ EIA+ Sbjct: 316 MDEIGSGSGDLTKRLPSDGEDEVAQIARSFNTFADKLTAVMQQIRLGSDSVRSAAQEIAA 375 Query: 239 GNLDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGN 298 GN DLS RTE+QA SLEETAS+MEELTS V+QN+DNARQA+QLA+ AS +A GG+VVG Sbjct: 376 GNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASQLAVTASDVATRGGDVVGQ 435 Query: 299 VVATMEAINQSSRQIVDIIGV 319 VV TM IN+SS++I DIIGV Sbjct: 436 VVQTMGGINESSKKIADIIGV 456 >ref|ZP_07675424.1| methyl-accepting chemotaxis protein [Ralstonia sp. 5_7_47FAA] gb|EFP66021.1| methyl-accepting chemotaxis protein [Ralstonia sp. 5_7_47FAA] Length = 600 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 172/319 (53%), Positives = 226/319 (70%), Gaps = 4/319 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 VT PY T + +V+F + + G L+GV+ V +D V VKA+HPT ASF FLV+ Sbjct: 134 VTPPYVSASTGQLVVTFAVPILEGGTLKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNA 193 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 G ++AHP+ + KP + + L L SLA AD E+ ++GA+KL+ VK Sbjct: 194 AGKIVAHPNDKLTLKPATELAAGLNEATLASLA--QADR--PVEVTVDGASKLLYRQGVK 249 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GT+W L+VA+DK+D AGMR +S+ A+V VA +AALI+G +T FRRLS +R+AMD Sbjct: 250 GTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMD 309 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 IGSG GDLT RLP DG+DEV+QIARSFN F K+TA++Q+IR SD+V+ ++ EIA+GN Sbjct: 310 DIGSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGN 369 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 DLS RTE+QA SLEETAS+MEELTS V+QN+DNARQA+QLA+ AS +A GG VVG VV Sbjct: 370 ADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVV 429 Query: 301 ATMEAINQSSRQIVDIIGV 319 TM IN+SS++I DIIGV Sbjct: 430 QTMGGINESSKKIADIIGV 448 >ref|YP_001898123.1| Cache sensor-containing methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12J] gb|ACD25691.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Ralstonia pickettii 12J] Length = 609 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 171/319 (53%), Positives = 226/319 (70%), Gaps = 4/319 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 VT PY T + +V+F + + G L+GV+ V +D V VKA+HPT ASF FLV+ Sbjct: 143 VTPPYVSASTGQLVVTFAVPILEGGALKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNA 202 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 G ++AHP+ + KP + + L L SLA A+ E+ ++GA+KL+ VK Sbjct: 203 AGKIVAHPNDKLTLKPATELAAGLNEATLASLA--QAER--PVEVTVDGASKLLYRQGVK 258 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GT+W L+VA+DK+D AGMR +S+ A+V VA +AALI+G +T FRRLS +R+AMD Sbjct: 259 GTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMD 318 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 IGSG GDLT RLP DG+DEV+QIARSFN F K+TA++Q+IR SD+V+ ++ EIA+GN Sbjct: 319 DIGSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGN 378 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 DLS RTE+QA SLEETAS+MEELTS V+QN+DNARQA+QLA+ AS +A GG VVG VV Sbjct: 379 ADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVV 438 Query: 301 ATMEAINQSSRQIVDIIGV 319 TM IN+SS++I DIIGV Sbjct: 439 QTMGGINESSKKIADIIGV 457 >emb|CBJ39043.1| putative methyl-accepting chemotaxis protein transmembrane receptor [Ralstonia solanacearum CMR15] Length = 600 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 175/319 (54%), Positives = 230/319 (72%), Gaps = 4/319 (1%) Query: 1 VTKPYTDVVTRKPMVSFTAQVKKDGVLQGVVAAAVFLDGVSNVVKAVHPTPASFAFLVDR 60 VT PY T K +V+F + +DG L+GVVA V +D V VKA+HPTPASF FLV+ Sbjct: 134 VTPPYISASTGKLVVTFAVPILRDGGLKGVVACDVSMDAVIANVKAIHPTPASFGFLVNA 193 Query: 61 DGMMLAHPDAQWINKPVKDWNSELTAERLNSLAGNNADHGASKEIVLNGAAKLVQAVAVK 120 G ++AHPD ++ KPV D ++ L L +LA ++ E+ + GAAKL+ V+ Sbjct: 194 AGKIVAHPDDKFTLKPVTDLSAGLNEATLAALAQSDK----PLEVEVGGAAKLLHRQGVQ 249 Query: 121 GTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILGLITTAVFRRLSQVRNAMD 180 GT+W L+VA+DK+D AGMR +S+ +V+VA +AA I+G +T FRRLS +R+AMD Sbjct: 250 GTDWGLVVALDKSDATAGMRSLVVTSIGVLVVVALVAAAIVGAMTARAFRRLSMIRDAMD 309 Query: 181 SIGSGDGDLTMRLPEDGKDEVSQIARSFNVFVQKITAILQEIRHTSDAVKVSSSEIASGN 240 IGSG GDLT RLP DG+DEV+QIARSFN F K+TA+LQ+IR SD+V+ ++ EIA+GN Sbjct: 310 DIGSGSGDLTKRLPADGRDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGN 369 Query: 241 LDLSGRTEQQAGSLEETASAMEELTSTVRQNSDNARQANQLALAASAIAKEGGEVVGNVV 300 DLS RTE+QA SLEETAS+MEELTS V+QN+DNARQA+ LA++AS +A GG VVG VV Sbjct: 370 ADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVSASDVATRGGSVVGQVV 429 Query: 301 ATMEAINQSSRQIVDIIGV 319 TM IN+SS++I DIIGV Sbjct: 430 QTMGGINESSKKIADIIGV 448