BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0096.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352203.1| LysR family transcriptional regulator [Janth... 599 e-169 ref|YP_003776646.1| transcription regulator protein [Herbaspiril... 593 e-167 ref|YP_004754102.1| LysR family transcriptional regulator [Colli... 568 e-160 ref|ZP_08273818.1| transcriptional regulator, LysR family [Oxalo... 484 e-135 ref|ZP_03267485.1| transcriptional regulator, LysR family [Burkh... 291 8e-77 >ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91274.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 311 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 287/311 (92%), Positives = 300/311 (96%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLN+PQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESL+K AKRILDE E LF+PKTAFVPQ+EARTFHIAAPDYMNT FFTEVIAR Sbjct: 61 GMVPTQHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 LRRESPKSHIVIHALGP+TDYVRLLSDGELDLVIANWDE P HLH+SKLFDDPIVCLMRS Sbjct: 121 LRRESPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRS 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 DCAYAKRTAKDAMTIEDYL+LPHAAPSQILPGYHGTIDTFLEKQNL RN+VVESAHFRML Sbjct: 181 DCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRML 240 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMV +TDLVL+AGQQF SFYEKTLSLKSY+VPIKFPPLRFYQLWHERVHQATEHKWLRA Sbjct: 241 PYMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 Query: 301 QVSAAAKMLVN 311 QV AAAK+L + Sbjct: 301 QVCAAAKVLSD 311 >ref|YP_003776646.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64738.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/311 (90%), Positives = 298/311 (95%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLD+HLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDLHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESLLKPAKRILDETERLF+PKT FVPQEE R FHIAAPDYMNTPFFTEVIAR Sbjct: 61 GMVPTQHGESLLKPAKRILDETERLFIPKTEFVPQEEERIFHIAAPDYMNTPFFTEVIAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 LRRESP+S IVIHALGP+TDYVR LSDGELDLVIANWD PP HLHLSKLFDDPIVCLMR+ Sbjct: 121 LRRESPRSRIVIHALGPDTDYVRRLSDGELDLVIANWDAPPAHLHLSKLFDDPIVCLMRA 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 DCAYA+RTA++AM++EDYL+LPHAAPSQILPGYHG+ID+FLEKQNL RNVVVESAHFRML Sbjct: 181 DCAYARRTAREAMSVEDYLSLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRML 240 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMVAQTDLVL+AGQQFASFYEK LSLKSY+VPIKFPPLRFYQLWHER HQATEHKWLRA Sbjct: 241 PYMVAQTDLVLTAGQQFASFYEKLLSLKSYAVPIKFPPLRFYQLWHERSHQATEHKWLRA 300 Query: 301 QVSAAAKMLVN 311 QV AAAK+L Sbjct: 301 QVGAAAKLLAQ 311 >ref|YP_004754102.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63279.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 312 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 269/310 (86%), Positives = 292/310 (94%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 M++LPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MAKLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESLLKPAKRIL+ETERLFV KTAFVPQ EARTFHIAAPDYMNTPFF EV+AR Sbjct: 61 GMVPTQHGESLLKPAKRILEETERLFVQKTAFVPQAEARTFHIAAPDYMNTPFFLEVVAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 LRRESPKS IVIHALGPETDYVRLLSDG+LDLVIANWDEPPPHLHLSKLFDDPIVCLMR+ Sbjct: 121 LRRESPKSRIVIHALGPETDYVRLLSDGDLDLVIANWDEPPPHLHLSKLFDDPIVCLMRA 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 D AYAKRTA D MT+EDYL+LPH AP Q+LPGYHG ID+FL+ QNL+RNVVVESA+F ML Sbjct: 181 DSAYAKRTAPDQMTVEDYLSLPHVAPWQVLPGYHGIIDSFLDSQNLNRNVVVESAYFGML 240 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMVAQTDLVL+ G+QFA FYEKTL+LKS+++PIKFPP+RFYQLWHERVHQATEHKWLR Sbjct: 241 PYMVAQTDLVLTTGRQFALFYEKTLALKSFTLPIKFPPMRFYQLWHERVHQATEHKWLRE 300 Query: 301 QVSAAAKMLV 310 Q+ AAK ++ Sbjct: 301 QIGIAAKAML 310 >ref|ZP_08273818.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32710.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 315 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 227/307 (73%), Positives = 260/307 (84%) Query: 4 LPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 63 LPDHLDIHLIRILY+LL EK+VSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV Sbjct: 9 LPDHLDIHLIRILYMLLSEKSVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMV 68 Query: 64 PTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRR 123 PTQHGESLLKPAKRIL ETERLFV K FV Q+E RTFHIAAPDY+ + F V++ LRR Sbjct: 69 PTQHGESLLKPAKRILVETERLFVRKVPFVAQDEGRTFHIAAPDYLASQFLPNVVSSLRR 128 Query: 124 ESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRSDCA 183 ESPKS +VIH LGPE DY+RLLSDG+LDLVIANW EPP HLHLSKLF+D I C M S+CA Sbjct: 129 ESPKSKLVIHGLGPEIDYIRLLSDGDLDLVIANWGEPPAHLHLSKLFEDTIACFMHSECA 188 Query: 184 YAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRMLPYM 243 YAKRT D MT+EDYL+LPH AP+Q L GY+G I+ +L KQN+ RNV V+SA F ++PYM Sbjct: 189 YAKRTGPDDMTVEDYLSLPHVAPAQTLAGYNGVIEGYLAKQNMKRNVTVQSAFFGLIPYM 248 Query: 244 VAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRAQVS 303 + QTDLVL+ G+QF FYEKTL LK ++VP+KFP +R+YQLWH+RVHQ+ EHKWLR +S Sbjct: 249 LTQTDLVLTTGEQFLRFYEKTLPLKRFTVPVKFPKMRYYQLWHDRVHQSNEHKWLRDLIS 308 Query: 304 AAAKMLV 310 AAAK L Sbjct: 309 AAAKSLT 315 >ref|ZP_03267485.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EEA00906.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 310 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 141/311 (45%), Positives = 202/311 (64%), Gaps = 3/311 (0%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MS+ + +D +L+R+L+ LL E++V+R A+KLNQ QP+ISA+LR+LR++TGDPLLVRG Sbjct: 1 MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKS 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPT++G LL+P + L E ER+ + F P R + I PDY+N F V+ R Sbjct: 61 GMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVER 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDLVIANWDEPPPHLHLSKLFDDPIVCLMRS 180 R+ +P + + H+LGP DY L DG+LD+V+ NW EPP LHLS LF D IVCLM S Sbjct: 121 FRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDQIVCLMSS 180 Query: 181 DCAYAKRTAKDAMTIEDYLTLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 +AKR +T++ YL PH AP+ G G ID L ++ L R+VVV +F + Sbjct: 181 THPFAKR---GGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLA 237 Query: 241 PYMVAQTDLVLSAGQQFASFYEKTLSLKSYSVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PY++ ++DL+ + + FA +Y K L L P+ FPP+++YQLWHERVH + E +WLR Sbjct: 238 PYVLIKSDLIFTTTRLFADYYAKFLPLTVVPAPLDFPPMQYYQLWHERVHYSDEVRWLRG 297 Query: 301 QVSAAAKMLVN 311 V+ A + L++ Sbjct: 298 LVAEATRTLID 308