BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0083.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754116.1| transcriptional regulator [Collimonas fungiv... 554 e-156 ref|YP_728022.1| LysR family transcriptional regulator [Ralstoni... 484 e-135 ref|YP_002007032.1| LysR family transcriptional regulator [Cupri... 484 e-135 ref|YP_004687319.1| LysR family transcriptional regulator [Cupri... 483 e-134 ref|YP_002983089.1| LysR family transcriptional regulator [Ralst... 482 e-134 >ref|YP_004754116.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63293.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 302 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 256/301 (85%), Positives = 281/301 (93%) Query: 1 MDKLKQIEAFVSVVEKGSLAAAALEENITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAFVSVVEKGSLA+AALE+NITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE Sbjct: 1 MDKLKQIEAFVSVVEKGSLASAALEQNITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 Query: 61 QGSVFLDHCRKLLGDIEVAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VFLDHCRKLL ++++AEK I+EGRHKATGHLVVS PAA+GR HVAPHAP F+A +PE Sbjct: 61 QGTVFLDHCRKLLTELDIAEKIISEGRHKATGHLVVSAPAAFGRKHVAPHAPAFIATNPE 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVKLAGNRRVVCAAPEYLHRNGIPKT 180 VQISFNLTDRVVDLVREGYD+ IRIGGAI+P+FVAVKLA NRRVVC PEY HRNGIPKT Sbjct: 121 VQISFNLTDRVVDLVREGYDISIRIGGAIDPNFVAVKLASNRRVVCGTPEYFHRNGIPKT 180 Query: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDGELLHRWASEGLGLAWR 240 L+D+A HNCL+FNLQGGQQRGWYFQQ GKPVII+ GNLDCNDGELLHRW SEGLGL WR Sbjct: 181 LEDIADHNCLSFNLQGGQQRGWYFQQGGKPVIIKTAGNLDCNDGELLHRWVSEGLGLGWR 240 Query: 241 STWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKEVYSQPDYWT 300 STWEI+SQLASGEL+TVLDE+ALPHYDIMAVYPQQRHLPAK RFFID LK +Y+QPDYW+ Sbjct: 241 STWEIESQLASGELLTVLDEFALPHYDIMAVYPQQRHLPAKVRFFIDRLKSIYAQPDYWS 300 Query: 301 R 301 + Sbjct: 301 K 301 >ref|YP_728022.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94654.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 306 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 220/299 (73%), Positives = 259/299 (86%) Query: 1 MDKLKQIEAFVSVVEKGSLAAAALEENITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF++VVE GS+AAAAL +N+TPVM+GRRI+ALE R+G KL+HR+TR + +TE Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTE 60 Query: 61 QGSVFLDHCRKLLGDIEVAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L D++ AE IAEG+HKATGHL+VS PAA+GR HVAPHAP FL+ +PE Sbjct: 61 QGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLSANPE 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVKLAGNRRVVCAAPEYLHRNGIPKT 180 VQISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+KLA N+RVVC P Y R G+P+T Sbjct: 121 VQISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIKLASNKRVVCGTPAYFARYGVPQT 180 Query: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYF QNGK V +R GNLDCNDGELLHRW EGLGL WR Sbjct: 181 LDDLAQHNCLAFNLQGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLGLGWR 240 Query: 241 STWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKEVYSQPDYW 299 STWEI QL SGELITVLDEYALP YDI+AVYPQQR +PAK RFFI++LK +++P YW Sbjct: 241 STWEILPQLESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFFIEHLKAQFARPGYW 299 >ref|YP_002007032.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70971.1| putative transcriptional regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 336 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 220/299 (73%), Positives = 260/299 (86%) Query: 1 MDKLKQIEAFVSVVEKGSLAAAALEENITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF++VVE GS+AAAAL +N+TPVM+GRRI+ALE R+G KL+HR+TR + +TE Sbjct: 31 MDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTE 90 Query: 61 QGSVFLDHCRKLLGDIEVAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L D++ AE IAEG+HKATGHL+VS PAA+GR HVAPHAP FLA++PE Sbjct: 91 QGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLASNPE 150 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVKLAGNRRVVCAAPEYLHRNGIPKT 180 VQISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+KLA N+RVVC P Y + G+P+T Sbjct: 151 VQISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIKLASNKRVVCGTPAYFAKYGVPQT 210 Query: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYF QNGK V +R GNLDCNDGELLHRW EGLGL WR Sbjct: 211 LDDLAQHNCLAFNLQGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLGLGWR 270 Query: 241 STWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKEVYSQPDYW 299 STWEI QL SGELITVLDEYALP YDI+AVYPQQR +PAK RFFI++LK +++P YW Sbjct: 271 STWEILPQLESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFFIEHLKAQFARPGYW 329 >ref|YP_004687319.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78838.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 336 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 220/299 (73%), Positives = 259/299 (86%) Query: 1 MDKLKQIEAFVSVVEKGSLAAAALEENITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF++VVE GS+AAAAL +N+TPVM+GRRI+ALE R+G KL+HR+TR + +TE Sbjct: 31 MDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTE 90 Query: 61 QGSVFLDHCRKLLGDIEVAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K L D++ AE IAEG+HKATGHL+VS PAA+GR HVAPHAP FL+ +PE Sbjct: 91 QGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLSANPE 150 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVKLAGNRRVVCAAPEYLHRNGIPKT 180 VQISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA+KLA N+RVVC P Y R G+P+T Sbjct: 151 VQISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIKLASNKRVVCGTPAYFARYGVPQT 210 Query: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLA+HNCLAFNLQGGQQRGWYF QNGK V +R GNLDCNDGELLHRW EGLGL WR Sbjct: 211 LDDLAQHNCLAFNLQGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLGLGWR 270 Query: 241 STWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKEVYSQPDYW 299 STWEI QL SGELITVLDEYALP YDI+AVYPQQR +PAK RFFI++LK +++P YW Sbjct: 271 STWEILPQLESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFFIEHLKAQFARPGYW 329 >ref|YP_002983089.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS64417.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 303 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 217/302 (71%), Positives = 263/302 (87%) Query: 1 MDKLKQIEAFVSVVEKGSLAAAALEENITPVMLGRRIDALEKRLGTKLMHRTTRHLTLTE 60 MDKLKQIEAF++VVE GS+AAAAL +++TPVM+GRRI+ALE RLG KL+HR+TR + +TE Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60 Query: 61 QGSVFLDHCRKLLGDIEVAEKSIAEGRHKATGHLVVSTPAAYGRLHVAPHAPTFLANHPE 120 QG+VF++ C+K LG+++ AE +AEGRHKATGHL+VS PAA+GR HVAPHAP FL +P+ Sbjct: 61 QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120 Query: 121 VQISFNLTDRVVDLVREGYDLGIRIGGAIEPSFVAVKLAGNRRVVCAAPEYLHRNGIPKT 180 V+ISFNLTDRVVDLVREGYD+GIRIGGAI+P+FVA++LA N+RVVC P Y ++G+P+T Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAIDPNFVAIRLASNKRVVCGTPAYFSKHGVPRT 180 Query: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKPVIIRAQGNLDCNDGELLHRWASEGLGLAWR 240 LDDLARHNCLAFNLQGGQQRGWYFQQNGK V ++ GNLDCNDGELLHRW EGLGL WR Sbjct: 181 LDDLARHNCLAFNLQGGQQRGWYFQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGLGWR 240 Query: 241 STWEIQSQLASGELITVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKEVYSQPDYWT 300 STWEIQ +L SG L+TVLD+YALP YDI+AVYPQQR +PAK RFFI++LK VY Q YW+ Sbjct: 241 STWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKTVYGQAGYWS 300 Query: 301 RS 302 R+ Sbjct: 301 RT 302