BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0050.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752529.1| tryptophan synthase subunit alpha [Collimona... 437 e-121 ref|YP_003776680.1| tryptophan synthase subunit alpha [Herbaspir... 435 e-120 gb|ADC94818.1| putative tryptophan synthase alpha subunit TrpA [... 428 e-118 ref|YP_001099527.1| tryptophan synthase subunit alpha [Herminiim... 402 e-110 ref|YP_001353853.1| tryptophan synthase subunit alpha [Janthinob... 401 e-110 >ref|YP_004752529.1| tryptophan synthase subunit alpha [Collimonas fungivorans Ter331] gb|AEK61706.1| Tryptophan synthase alpha chain [Collimonas fungivorans Ter331] Length = 265 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/264 (81%), Positives = 236/264 (89%), Gaps = 7/264 (2%) Query: 30 MSRIQSTFSALAAAPPP-------PXDPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82 MSRIQ+T +ALAA DPAP+LTVPL+HALV GG DILELGVPFSDPMAE Sbjct: 1 MSRIQTTLAALAANNKKGLIPFITAGDPAPELTVPLMHALVRGGADILELGVPFSDPMAE 60 Query: 83 GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142 GPVIQRACERALKF VS HDVL YVREFRQ+N +TPVVLMGYANP+ER GVDAFIAAAKE Sbjct: 61 GPVIQRACERALKFGVSLHDVLAYVREFRQSNNSTPVVLMGYANPLERMGVDAFIAAAKE 120 Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202 AGVDG+IVVDYPPEECEEF++KMQA G+DPIFLLAPTSTEERIMQVAKVSSGF YYVSLK Sbjct: 121 AGVDGSIVVDYPPEECEEFAEKMQANGMDPIFLLAPTSTEERIMQVAKVSSGFTYYVSLK 180 Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262 GVTGAANID EVAAR+AAIRKHVKLPIGVGFGIRD ATAKAV++V+DAVVIGSRIIQEL Sbjct: 181 GVTGAANIDTGEVAARVAAIRKHVKLPIGVGFGIRDAATAKAVAQVSDAVVIGSRIIQEL 240 Query: 263 ENTPRERAVEAVQAFVADIRKALD 286 ENTPRE+AV AV++F++ IRKALD Sbjct: 241 ENTPREQAVAAVESFLSGIRKALD 264 >ref|YP_003776680.1| tryptophan synthase subunit alpha [Herbaspirillum seropedicae SmR1] gb|ADJ64772.1| tryptophan synthase (alpha chain) protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/265 (81%), Positives = 233/265 (87%), Gaps = 7/265 (2%) Query: 30 MSRIQSTFSALAAAPPPPX-------DPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82 MSRIQ+TFS LA DPAP+LTVPLLHALVAGGVDILELGVPFSDPMAE Sbjct: 1 MSRIQTTFSQLAEQKRKALITFITAGDPAPELTVPLLHALVAGGVDILELGVPFSDPMAE 60 Query: 83 GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142 GPVIQRACERALKF +STHDVL YVREFR+TNT TP+VLMGYANPIERFGVDAFIAAA E Sbjct: 61 GPVIQRACERALKFGISTHDVLGYVREFRKTNTHTPIVLMGYANPIERFGVDAFIAAASE 120 Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202 AGVDGTIVVDYPPEECEEF+QKMQA+G+DPIFLLAPTS++ERI QVA VSSGFCYYVSLK Sbjct: 121 AGVDGTIVVDYPPEECEEFAQKMQAKGMDPIFLLAPTSSQERIRQVAAVSSGFCYYVSLK 180 Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262 GVTGA +ID EVA RIAAIR+HVKLPI VGFGIRDGATA+ V VADAVVIGSRII EL Sbjct: 181 GVTGAGHIDTAEVAERIAAIRQHVKLPIAVGFGIRDGATARTVGSVADAVVIGSRIIAEL 240 Query: 263 ENTPRERAVEAVQAFVADIRKALDA 287 ENTP+++A +AVQAFV DIR+ALDA Sbjct: 241 ENTPQDQACDAVQAFVTDIRQALDA 265 >gb|ADC94818.1| putative tryptophan synthase alpha subunit TrpA [Collimonas sp. MPS11E8] Length = 265 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/264 (79%), Positives = 232/264 (87%), Gaps = 7/264 (2%) Query: 30 MSRIQSTFSALAAAPPP-------PXDPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82 MSRIQ+T +ALAA+ DPAP+LTVPL+HALV GG DILELGVPFSDPMAE Sbjct: 1 MSRIQTTLAALAASNKKGLIPFITAGDPAPELTVPLMHALVRGGADILELGVPFSDPMAE 60 Query: 83 GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142 GPVIQRACERALKF VS HDVL YVREFRQTN+ TPVVLMGYANP+ER G+DAFIAAAKE Sbjct: 61 GPVIQRACERALKFGVSLHDVLGYVREFRQTNSRTPVVLMGYANPLERMGIDAFIAAAKE 120 Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202 AGVDG+IVVDYPPEECEEF+ KMQA G+DPIFLLAPTSTEERI QVAKV GF YYVSLK Sbjct: 121 AGVDGSIVVDYPPEECEEFAAKMQANGMDPIFLLAPTSTEERIKQVAKVGGGFTYYVSLK 180 Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262 GVTGAANID EVAAR+AAIRKHVKLPIGVGFGIRD ATAKAV++V+DA+VIGSRIIQEL Sbjct: 181 GVTGAANIDTAEVAARVAAIRKHVKLPIGVGFGIRDAATAKAVAQVSDAIVIGSRIIQEL 240 Query: 263 ENTPRERAVEAVQAFVADIRKALD 286 ENTP +AVEAV++F++ IRKALD Sbjct: 241 ENTPPGKAVEAVESFLSGIRKALD 264 >ref|YP_001099527.1| tryptophan synthase subunit alpha [Herminiimonas arsenicoxydans] sp|A4G4G3.1|TRPA_HERAR RecName: Full=Tryptophan synthase alpha chain emb|CAL61400.1| tryptophan synthase, alpha chain [Herminiimonas arsenicoxydans] Length = 265 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/264 (78%), Positives = 225/264 (85%), Gaps = 7/264 (2%) Query: 30 MSRIQSTFSALAAAPPP-------PXDPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82 MSRIQSTF+ALAA DPAPDLTVPL+HALVAGG DILELGVPFSDPMAE Sbjct: 1 MSRIQSTFAALAAKNKKGLIPFITAGDPAPDLTVPLMHALVAGGADILELGVPFSDPMAE 60 Query: 83 GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142 GPVIQRACERALKFNVS HDVL +V EFR+T+TTTPVVLMGYANPIER G AF+ AAK Sbjct: 61 GPVIQRACERALKFNVSLHDVLGFVSEFRKTDTTTPVVLMGYANPIERMGQTAFVLAAKA 120 Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202 AGVDGTIVVDYPPEECEEF+ ++A +DPIFLL+PTSTEERI QVAK SGF YYVSLK Sbjct: 121 AGVDGTIVVDYPPEECEEFAATLKANDMDPIFLLSPTSTEERIQQVAKFGSGFSYYVSLK 180 Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262 GVTG+ANID +VA RI AIRKHVKLPIGVGFGIRD ATAKAV+ V+DAVVIGSRIIQEL Sbjct: 181 GVTGSANIDTQDVAQRIEAIRKHVKLPIGVGFGIRDAATAKAVATVSDAVVIGSRIIQEL 240 Query: 263 ENTPRERAVEAVQAFVADIRKALD 286 ENTPRERAVEA Q F++ IRKALD Sbjct: 241 ENTPRERAVEAAQTFISGIRKALD 264 >ref|YP_001353853.1| tryptophan synthase subunit alpha [Janthinobacterium sp. Marseille] sp|A6T006.1|TRPA_JANMA RecName: Full=Tryptophan synthase alpha chain gb|ABR88679.1| tryptophan synthase alpha chain [Janthinobacterium sp. Marseille] Length = 265 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 202/264 (76%), Positives = 220/264 (83%), Gaps = 7/264 (2%) Query: 30 MSRIQSTFSALAAAPPP-------PXDPAPDLTVPLLHALVAGGVDILELGVPFSDPMAE 82 MSRIQST +ALAA DPAP+LTVPL+HALVAGG DILELGVPFSDPMAE Sbjct: 1 MSRIQSTLAALAAKNKKGLIPFITAGDPAPELTVPLMHALVAGGADILELGVPFSDPMAE 60 Query: 83 GPVIQRACERALKFNVSTHDVLDYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAAAKE 142 GPVIQRACERAL VS HDVL +V EFR+TN +TPVVLMGYANPIER G FI AAK Sbjct: 61 GPVIQRACERALASGVSMHDVLGFVSEFRKTNNSTPVVLMGYANPIERMGQTKFILAAKA 120 Query: 143 AGVDGTIVVDYPPEECEEFSQKMQAQGLDPIFLLAPTSTEERIMQVAKVSSGFCYYVSLK 202 AGVDGTIVVDYPPEECEEF+ ++ +DPIFLL+PTSTEERI QVAK SGF YYVSLK Sbjct: 121 AGVDGTIVVDYPPEECEEFAATLKENDMDPIFLLSPTSTEERIQQVAKFGSGFSYYVSLK 180 Query: 203 GVTGAANIDIVEVAARIAAIRKHVKLPIGVGFGIRDGATAKAVSEVADAVVIGSRIIQEL 262 GVTGAANID EVA RIAAIRK+VKLPIGVGFGIRD ATAKAV++V+DAVVIGSRIIQEL Sbjct: 181 GVTGAANIDTKEVAERIAAIRKYVKLPIGVGFGIRDAATAKAVAQVSDAVVIGSRIIQEL 240 Query: 263 ENTPRERAVEAVQAFVADIRKALD 286 EN+PRE+AVE VQ F+A IRKALD Sbjct: 241 ENSPREQAVERVQTFIAGIRKALD 264