BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0048.p         (297 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776681.1| tryptophan synthase subunit beta [Herbaspiri...   467   e-130
ref|YP_001099526.1| tryptophan synthase subunit beta [Herminiimo...   447   e-124
ref|YP_001353854.1| tryptophan synthase subunit beta [Janthinoba...   441   e-122
gb|ADC94819.1| putative tryptophan synthase beta subunit TrpB [C...   431   e-119
ref|YP_004752528.1| tryptophan synthase subunit beta [Collimonas...   428   e-118

>ref|YP_003776681.1| tryptophan synthase subunit beta [Herbaspirillum seropedicae SmR1]
 gb|ADJ64773.1| tryptophan synthase (beta chain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score =  467 bits (1202), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/238 (92%), Positives = 227/238 (95%)

Query: 1   MKELNPLGNFSERQPVSAAALHQTAPYNLPDARGHFGQYGGSFVSETLTHALNELRDAYA 60
           MKELNPLG F+ERQ + AAALHQTA YNLPD+RGHFG YGGSFVSETLT ALNELR+AYA
Sbjct: 1   MKELNPLGGFAERQAIPAAALHQTAHYNLPDSRGHFGPYGGSFVSETLTLALNELREAYA 60

Query: 61  HYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
            YQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSE+AGGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  RYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSEMAGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL
Sbjct: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180

Query: 181 GATVVPVESGSKTLKDALNEAMRDWVTNVESTFYIIGTVAGPHPYPMMVRDFQSSATN 238
           GA VVPVESGSKTLKDALNEAMRDWVTNVE+TFYIIGTVAGPHPYPMMVRDFQS   N
Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGN 238


>ref|YP_001099526.1| tryptophan synthase subunit beta [Herminiimonas arsenicoxydans]
 emb|CAL61399.1| tryptophan synthase, beta chain [Herminiimonas arsenicoxydans]
          Length = 423

 Score =  447 bits (1150), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/238 (87%), Positives = 220/238 (92%)

Query: 1   MKELNPLGNFSERQPVSAAALHQTAPYNLPDARGHFGQYGGSFVSETLTHALNELRDAYA 60
           MKEL+ LG ++ERQ VS  ALHQTAPYNLPDARGHFGQYGGSFV+ETL+HAL ELRDAYA
Sbjct: 1   MKELDALGTYAERQAVSETALHQTAPYNLPDARGHFGQYGGSFVAETLSHALAELRDAYA 60

Query: 61  HYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
           HY  D  FLAEFH +LKHFVGRPSP+YHAKRWSE  GGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  HYSKDPAFLAEFHYDLKHFVGRPSPIYHAKRWSEKMGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLA+RMGKKRIIAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ QNVYRM LL
Sbjct: 121 GQALLARRMGKKRIIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQAQNVYRMKLL 180

Query: 181 GATVVPVESGSKTLKDALNEAMRDWVTNVESTFYIIGTVAGPHPYPMMVRDFQSSATN 238
           GATVVPVESGSKTLKDALNEAMRDWVTN+E+TFYIIGTVAGPHPYPMMVRDFQS   N
Sbjct: 181 GATVVPVESGSKTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQSVIGN 238


>ref|YP_001353854.1| tryptophan synthase subunit beta [Janthinobacterium sp. Marseille]
 gb|ABR88359.1| tryptophan synthase beta chain [Janthinobacterium sp. Marseille]
          Length = 423

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/238 (85%), Positives = 220/238 (92%)

Query: 1   MKELNPLGNFSERQPVSAAALHQTAPYNLPDARGHFGQYGGSFVSETLTHALNELRDAYA 60
           MKEL+ LG+F+ERQ ++ +ALHQTAPYNLPDARGHFG YGGSFV+ETL+HAL EL++AYA
Sbjct: 1   MKELDALGSFAERQAIAESALHQTAPYNLPDARGHFGPYGGSFVAETLSHALAELKEAYA 60

Query: 61  HYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
           HY  D  FLAEFH +LKHFVGRPSP+YHAKRWSE  GGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  HYSKDPSFLAEFHYDLKHFVGRPSPIYHAKRWSEKMGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLAKRMGK RIIAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ QNVYRM LL
Sbjct: 121 GQALLAKRMGKPRIIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQAQNVYRMKLL 180

Query: 181 GATVVPVESGSKTLKDALNEAMRDWVTNVESTFYIIGTVAGPHPYPMMVRDFQSSATN 238
           GATVVPVESGSKTLKDALNEAMRDWVTN+E+TFYIIGTVAGPHPYPMMVRDFQS   N
Sbjct: 181 GATVVPVESGSKTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQSVIGN 238


>gb|ADC94819.1| putative tryptophan synthase beta subunit TrpB [Collimonas sp.
           MPS11E8]
          Length = 421

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/238 (84%), Positives = 220/238 (92%)

Query: 1   MKELNPLGNFSERQPVSAAALHQTAPYNLPDARGHFGQYGGSFVSETLTHALNELRDAYA 60
           MKEL+PL  ++ERQP++A+ L Q+A Y+LPDA+GHFG YGGSFVSETLT AL+EL+ AYA
Sbjct: 1   MKELSPLEQYAERQPLAASTLRQSAKYSLPDAKGHFGMYGGSFVSETLTLALSELQQAYA 60

Query: 61  HYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
            YQ++ QFLAEFH+ELKHFVGRPSP+YHAKRWSE  GGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  KYQNEPQFLAEFHSELKHFVGRPSPIYHAKRWSEQMGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLA+RMGK R+IAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ+QNVYRMNLL
Sbjct: 121 GQALLARRMGKPRVIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQMQNVYRMNLL 180

Query: 181 GATVVPVESGSKTLKDALNEAMRDWVTNVESTFYIIGTVAGPHPYPMMVRDFQSSATN 238
           GA VVPVESGSKTLKDALNEAMRDWVTNVE TFYIIGTVAGPHPYPMMVRDFQS   N
Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVEDTFYIIGTVAGPHPYPMMVRDFQSVIGN 238


>ref|YP_004752528.1| tryptophan synthase subunit beta [Collimonas fungivorans Ter331]
 gb|AEK61705.1| Tryptophan synthase beta chain [Collimonas fungivorans Ter331]
          Length = 420

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/238 (83%), Positives = 216/238 (90%)

Query: 1   MKELNPLGNFSERQPVSAAALHQTAPYNLPDARGHFGQYGGSFVSETLTHALNELRDAYA 60
           MKE  PL  ++ERQP++   L Q+A YNLPDA+GHFG YGGSFVSETLT AL+EL+ AYA
Sbjct: 1   MKEFTPLEQYAERQPLANTTLRQSAQYNLPDAKGHFGMYGGSFVSETLTLALSELQQAYA 60

Query: 61  HYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
            YQ++ QFLAEFH+ELKH+VGRPSP+YHAKRWSE  GGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  KYQNEPQFLAEFHSELKHYVGRPSPIYHAKRWSEQMGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKKRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLAKRMGK R+IAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ+QNVYRMNLL
Sbjct: 121 GQALLAKRMGKPRVIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQMQNVYRMNLL 180

Query: 181 GATVVPVESGSKTLKDALNEAMRDWVTNVESTFYIIGTVAGPHPYPMMVRDFQSSATN 238
           GA VVPVESGSKTLKDALNEAMRDWVTNVE TFYIIGTVAGPHPYPMMVRDFQS   N
Sbjct: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVEDTFYIIGTVAGPHPYPMMVRDFQSVIGN 238