BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0046.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fu... 419 e-115 ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum ... 419 e-115 ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas... 386 e-105 ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacte... 385 e-105 ref|ZP_04579346.1| tRNA pseudouridine synthase A [Oxalobacter fo... 358 6e-97 >ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331] gb|AEK61703.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331] Length = 280 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/276 (72%), Positives = 232/276 (84%), Gaps = 8/276 (2%) Query: 33 PALHRVVLGIQYDGNSWQGWQTQPHGLTVQDKLEAALKKFTLTDIDTTCAGRTDSGVHAL 92 P L+R+VLG+QYDG WQGWQTQP G TVQD+LEAAL+KF IDTTCAGRTDSGVHAL Sbjct: 12 PNLNRIVLGVQYDGTPWQGWQTQPSGKTVQDRLEAALQKFAQGAIDTTCAGRTDSGVHAL 71 Query: 93 EQVVHFDTVIARETASWVRGVNAFLPPSIAVRWACEVALEEASGLNPGEREDGFHARFSA 152 EQVVHFDT ++RET SWVRG+NAFLPPSIAVRWA ++ L E ED FHARFSA Sbjct: 72 EQVVHFDTALSRETFSWVRGLNAFLPPSIAVRWAHQLPLL-------AEGEDQFHARFSA 124 Query: 153 TARTYHYVLYNHPVRSPLLAGKAGWTFRPLDVGLMQQGADHLIGMHDFSSFRAVECQARS 212 TARTYHY+LYN+PVRSPLL GKAGW FRPL++ LM+Q A HL+G HDFS+FRAVECQA+S Sbjct: 125 TARTYHYLLYNNPVRSPLLEGKAGWVFRPLELELMRQAAAHLVGTHDFSAFRAVECQAKS 184 Query: 213 PVRTMESLQVRRHGDMIVFTLKANAFLHHMVRNIVGSLIYVGNGRQPPQWIAEVLAQKDR 272 PVRTME +++ R GD+IVF+L+ANAFLHHMVRNIVGSLIY GN +PP+W+AE+LAQ+DR Sbjct: 185 PVRTMEEIRIERRGDLIVFSLRANAFLHHMVRNIVGSLIYAGNASKPPEWLAELLAQRDR 244 Query: 273 GCAAPTFMPDGLYLAKVDYPARWQLPQE-AAAWPWL 307 G AAPTFMPDGLYLA+V Y +W+LPQ+ A PWL Sbjct: 245 GRAAPTFMPDGLYLAQVAYDPKWRLPQQPAGVLPWL 280 >ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64775.1| tRNA pseudouridine synthase protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/291 (70%), Positives = 233/291 (80%), Gaps = 17/291 (5%) Query: 34 ALHRVVLGIQYDGNSWQGWQTQPHGLTVQDKLEAALKKFTLTDIDTTCAGRTDSGVHALE 93 L RVVLG+QYDG SWQGWQTQPH TVQD+LEAAL++F+ I TTCAGRTDSGVHALE Sbjct: 10 GLRRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALQRFSTQPIATTCAGRTDSGVHALE 69 Query: 94 QVVHFDTVIARETASWVRGVNAFLPPSIAVRWACEVALEE----------ASGLNPGER- 142 Q+VHFDT IAR++ SWVRG NAFLPP+IAVRWACE+ + A+ L+ +R Sbjct: 70 QIVHFDTPIARDSFSWVRGTNAFLPPTIAVRWACELPYVDDAAIASAASQAAELHGADRA 129 Query: 143 ------EDGFHARFSATARTYHYVLYNHPVRSPLLAGKAGWTFRPLDVGLMQQGADHLIG 196 + GFHARFSA ARTYHYVLYNH VR+PLLAGKAGWTFRPLD M + A HLIG Sbjct: 130 GADSLSQFGFHARFSAIARTYHYVLYNHAVRTPLLAGKAGWTFRPLDADRMHRAAQHLIG 189 Query: 197 MHDFSSFRAVECQARSPVRTMESLQVRRHGDMIVFTLKANAFLHHMVRNIVGSLIYVGNG 256 HDF+SFRAVECQA+SPVR MES+ VRRHGDMIVFTLKANAFLHHMVRNIVGSL+ VG+G Sbjct: 190 EHDFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLVVVGSG 249 Query: 257 RQPPQWIAEVLAQKDRGCAAPTFMPDGLYLAKVDYPARWQLPQEAAAWPWL 307 +Q P W+ +VLA +DR AAPTFMPDGLYLA+VDYP W LPQE+ AWPWL Sbjct: 250 KQEPDWMGQVLALRDRSRAAPTFMPDGLYLARVDYPDAWALPQESRAWPWL 300 >ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans] sp|A4G4G0.1|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Herminiimonas arsenicoxydans] Length = 275 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/263 (68%), Positives = 212/263 (80%), Gaps = 9/263 (3%) Query: 37 RVVLGIQYDGNSWQGWQTQPHGLTVQDKLEAALKKFTLTDIDTTCAGRTDSGVHALEQVV 96 R+VLG+QYDG WQGWQTQ +GLTVQDKLE AL KFT I T CAGRTD+GVHALEQVV Sbjct: 13 RIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQVV 72 Query: 97 HFDTVIARETASWVRGVNAFLPPSIAVRWACEVALEEASGLNPGEREDGFHARFSATART 156 HFDT + R+ SWVRGVN FLP SIAVRWA EVA + A + FHARFSA +RT Sbjct: 73 HFDTTLERDMQSWVRGVNTFLPSSIAVRWASEVAHDPA---------ENFHARFSARSRT 123 Query: 157 YHYVLYNHPVRSPLLAGKAGWTFRPLDVGLMQQGADHLIGMHDFSSFRAVECQARSPVRT 216 YHY+LYN+PVRSPLL GKAGW FR LD+ MQ+ A HL+G HDFS+FR+V+CQA+SPV+T Sbjct: 124 YHYMLYNNPVRSPLLEGKAGWVFRALDIAKMQEAAAHLLGQHDFSAFRSVQCQAKSPVKT 183 Query: 217 MESLQVRRHGDMIVFTLKANAFLHHMVRNIVGSLIYVGNGRQPPQWIAEVLAQKDRGCAA 276 M ++++ R GD+I+FT+ ANAFLHHMVRNIVGSLIYVGNG Q P W+ EVLA ++R AA Sbjct: 184 MHAIKIERRGDLIMFTVHANAFLHHMVRNIVGSLIYVGNGTQAPSWLKEVLAGQERKFAA 243 Query: 277 PTFMPDGLYLAKVDYPARWQLPQ 299 PTFMPDGLYLAK+DY +WQLPQ Sbjct: 244 PTFMPDGLYLAKIDYDPKWQLPQ 266 >ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] sp|A6T009.1|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridine(38-40) synthase; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] Length = 271 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/263 (68%), Positives = 212/263 (80%), Gaps = 7/263 (2%) Query: 37 RVVLGIQYDGNSWQGWQTQPHGLTVQDKLEAALKKFTLTDIDTTCAGRTDSGVHALEQVV 96 R+VLG+QYDG WQGWQTQ +GLTVQD+LE AL KFTL + T CAGRTD+GVH LEQVV Sbjct: 7 RIVLGVQYDGTPWQGWQTQLNGLTVQDRLEFALSKFTLQTVSTVCAGRTDAGVHGLEQVV 66 Query: 97 HFDTVIARETASWVRGVNAFLPPSIAVRWACEVALEEASGLNPGEREDGFHARFSATART 156 HFDT + R+ +SWVRGVN FLPPSIAVRWA EVA NP E +D FHARFSA +R Sbjct: 67 HFDTTLERDMSSWVRGVNTFLPPSIAVRWATEVAH------NPDE-QDNFHARFSARSRM 119 Query: 157 YHYVLYNHPVRSPLLAGKAGWTFRPLDVGLMQQGADHLIGMHDFSSFRAVECQARSPVRT 216 Y YVLYN+PVRSPLL GKAGW FR LDV M+ A HL+G HDFS+FR+V+CQA+SPV++ Sbjct: 120 YQYVLYNNPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLGEHDFSTFRSVQCQAKSPVKS 179 Query: 217 MESLQVRRHGDMIVFTLKANAFLHHMVRNIVGSLIYVGNGRQPPQWIAEVLAQKDRGCAA 276 M S+++ + GD+I+FTL ANAFLHHMVRNIVGSLIYVGNG Q P W+ E+L +DR AA Sbjct: 180 MYSIKIEQRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAA 239 Query: 277 PTFMPDGLYLAKVDYPARWQLPQ 299 PTFMPDGLYLAK+DY +WQLPQ Sbjct: 240 PTFMPDGLYLAKIDYDPKWQLPQ 262 >ref|ZP_04579346.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] gb|EEO30319.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] Length = 261 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 165/271 (60%), Positives = 208/271 (76%), Gaps = 10/271 (3%) Query: 35 LHRVVLGIQYDGNSWQGWQTQPHGLTVQDKLEAALKKFTLTDIDTTCAGRTDSGVHALEQ 94 + R+ LGI+YDG +W+GWQTQP G+TVQD+L+ A+ +FT T I T CAGRTD+GVHA EQ Sbjct: 1 MKRIALGIEYDGTNWRGWQTQPDGMTVQDQLQEAIFRFTRTRISTMCAGRTDAGVHASEQ 60 Query: 95 VVHFDTVIARETASWVRGVNAFLPPSIAVRWACEVALEEASGLNPGEREDGFHARFSATA 154 VVH DT + R SWVRGVNA+LP SIAVRWACEV PG + DGFHAR SA A Sbjct: 61 VVHLDTELDRLPVSWVRGVNAYLPSSIAVRWACEV---------PGGK-DGFHARSSAMA 110 Query: 155 RTYHYVLYNHPVRSPLLAGKAGWTFRPLDVGLMQQGADHLIGMHDFSSFRAVECQARSPV 214 R Y Y++YN PVRSPL +AGW F+PLD+GLMQ+GA L+G HDFS+FRA ECQ+ +PV Sbjct: 111 RRYRYLIYNSPVRSPLWKNRAGWVFKPLDIGLMQKGAGLLLGEHDFSAFRAAECQSITPV 170 Query: 215 RTMESLQVRRHGDMIVFTLKANAFLHHMVRNIVGSLIYVGNGRQPPQWIAEVLAQKDRGC 274 +T++ + + + G++IVFT +ANAFLHHMVRNIVGSL+Y+G G PP+W+ ++L KDR Sbjct: 171 KTVKRIDIEKQGNLIVFTFEANAFLHHMVRNIVGSLVYIGKGNHPPEWMKQLLDAKDRSL 230 Query: 275 AAPTFMPDGLYLAKVDYPARWQLPQEAAAWP 305 AAPTFMPDGLYL++V Y A+W LPQ +P Sbjct: 231 AAPTFMPDGLYLSRVHYEAKWGLPQREDVFP 261