BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0042.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit ... 410 e-113 ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit ... 407 e-112 ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [... 391 e-107 ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit ... 384 e-105 ref|YP_001099520.1| isopropylmalate isomerase small subunit [Her... 376 e-102 >ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64779.1| 3-isopropylmalate dehydratase (small subunit) protein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust. Identities = 187/215 (86%), Positives = 207/215 (96%) Query: 12 MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71 MNKFIVH+GLVAPLDRANVDTDAIIPKQFLKSI+RSGFGPNLFDEWRYLDHGEPGMDNSK Sbjct: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 Query: 72 RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWALDQ+GFRAVIAPSFADIFFNNC Sbjct: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191 +KNGLLPIVL EQQ+D LF+EVKAFPG+RL+IDLEKQ+++T NGSQTYPFE+ EFRKYCL Sbjct: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 180 Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226 LNG DDIGLTLR+AD IRA+EE+HL +QPWL+NTI Sbjct: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 >ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] gb|AEK61699.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] Length = 216 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/215 (89%), Positives = 205/215 (95%) Query: 12 MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71 MNKF V DGLVAPLDRANVDTDAIIPKQFLKSIQR+GFGPNLFDEWRYLDHGEPGMDNS+ Sbjct: 2 MNKFTVVDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGMDNSR 61 Query: 72 RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131 RPLNPDFVLNQ RYQGAS+LL RKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC Sbjct: 62 RPLNPDFVLNQQRYQGASILLTRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 121 Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191 FKNGLLP+VLPE QIDRLFDEVKAFPG+RL IDL+KQ+++TANG+ +PFEVGEFRKYCL Sbjct: 122 FKNGLLPLVLPEAQIDRLFDEVKAFPGYRLQIDLDKQLVSTANGNVAFPFEVGEFRKYCL 181 Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226 LNGLDDIGLTLRQ+DKIR FEERHLF QPWL+NTI Sbjct: 182 LNGLDDIGLTLRQSDKIRDFEERHLFAQPWLSNTI 216 >ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33965.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/215 (84%), Positives = 199/215 (92%) Query: 12 MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71 MNKF +HDGLVAPLDRANVDTDAIIPKQFLKSIQR+GFGPNLFDEWRYLDHGEPG DNS+ Sbjct: 1 MNKFNLHDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGRDNSR 60 Query: 72 RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131 RPLNPDFVLNQ RY GAS+LL RKNFGCGSSREHAPWALDQYGFRA+IAPS+ADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYTGASILLTRKNFGCGSSREHAPWALDQYGFRAIIAPSYADIFFNNC 120 Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191 FKNGLLPIVL E QID LFDEV+AFPGFRL+IDLE+Q+++T NGS+++PFEV FRKYCL Sbjct: 121 FKNGLLPIVLTEAQIDHLFDEVRAFPGFRLVIDLERQLVSTTNGSESFPFEVDTFRKYCL 180 Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226 NGLDDIGLTL+QADKIRAFEERHL +PWL N I Sbjct: 181 QNGLDDIGLTLQQADKIRAFEERHLAGKPWLTNAI 215 >ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] gb|ABR88621.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] Length = 215 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 178/215 (82%), Positives = 197/215 (91%) Query: 12 MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71 M+KF + +GLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLD GEPG DNS Sbjct: 1 MDKFTILNGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNSN 60 Query: 72 RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131 RPLNPDFVLNQ+RYQGAS+LLARKNFGCGSSREHAPWAL QYGFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQSRYQGASILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191 +KNGLLP+ L E Q+D LF+EVKAFPGF L+IDLEKQVI T+NGS TYPFE+ FRKYCL Sbjct: 121 YKNGLLPVALSEAQVDHLFNEVKAFPGFHLVIDLEKQVIGTSNGSVTYPFEIDAFRKYCL 180 Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226 LNG DDIGLTL++ADKIRAFEERHL QPWL+NTI Sbjct: 181 LNGFDDIGLTLQKADKIRAFEERHLAAQPWLSNTI 215 >ref|YP_001099520.1| isopropylmalate isomerase small subunit [Herminiimonas arsenicoxydans] emb|CAL61393.1| 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) [Herminiimonas arsenicoxydans] Length = 215 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/215 (80%), Positives = 193/215 (89%) Query: 12 MNKFIVHDGLVAPLDRANVDTDAIIPKQFLKSIQRSGFGPNLFDEWRYLDHGEPGMDNSK 71 M KF + DGLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLD GEPG DN+ Sbjct: 1 MEKFNILDGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNTN 60 Query: 72 RPLNPDFVLNQARYQGASVLLARKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 131 RPLNPDFVLNQ RYQGA +LLARKNFGCGSSREHAPWAL QYGFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYQGAQILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 132 FKNGLLPIVLPEQQIDRLFDEVKAFPGFRLIIDLEKQVITTANGSQTYPFEVGEFRKYCL 191 +KNGLLP+ L E Q+D LF+EVKAFPGF L+IDLEKQ+I T+NGS YPF++ FRKYCL Sbjct: 121 YKNGLLPVTLTEAQVDHLFNEVKAFPGFHLVIDLEKQIIATSNGSVAYPFDIDAFRKYCL 180 Query: 192 LNGLDDIGLTLRQADKIRAFEERHLFDQPWLANTI 226 LNG DDIGLTL++ADKIRA+EERHL QPWL+NTI Sbjct: 181 LNGFDDIGLTLQKADKIRAYEERHLAAQPWLSNTI 215