BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0014.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752508.1| hypothetical protein CFU_1853 [Collimonas fu... 656 0.0 ref|YP_003776703.1| TRAP-type uncharacterized transport system p... 652 0.0 ref|YP_003604187.1| hypothetical protein BC1002_0575 [Burkholder... 565 e-159 ref|YP_003905821.1| hypothetical protein BC1003_0527 [Burkholder... 563 e-158 ref|YP_001894445.1| hypothetical protein Bphyt_0798 [Burkholderi... 563 e-158 >ref|YP_004752508.1| hypothetical protein CFU_1853 [Collimonas fungivorans Ter331] gb|AEK61685.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 476 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/438 (74%), Positives = 375/438 (85%), Gaps = 2/438 (0%) Query: 9 KHSVSAMKARFVAISWRDLAVSFGPMVLLIIVGVWLAIWLIHPAPPKTITIATGPEHSNF 68 K S +KARFVAISWRDLA+SFGP+ LL++V +WLAIW IHPAPP +IT+ TGPEHSNF Sbjct: 35 KQSARNIKARFVAISWRDLAISFGPIALLVVVAIWLAIWFIHPAPPNSITMITGPEHSNF 94 Query: 69 WNVAEKYKNILARDGVTVKIVASEGSLDNLRKLVDPDGDVDVAFVQGGIADSVDIDSLVS 128 WN A+KY+ ILAR+G+ +KIV SEGSLDNL+KL DP+ +DV FVQGG+A + ID LVS Sbjct: 95 WNTAQKYQKILARNGIKLKIVTSEGSLDNLKKLNDPNSGIDVGFVQGGVAGDLPIDQLVS 154 Query: 129 LGSVAYSPVSVFYRNDKVVSRLSELTGKSIAIGLQGSGSRVLALTLLKASGIEPGGATKL 188 LGSV+Y PVSVFYR + ++RLSEL GK +AIG+QGSGSRVLALTLLKA+GIE GG T+L Sbjct: 155 LGSVSYVPVSVFYRGKERLNRLSELAGKRVAIGMQGSGSRVLALTLLKANGIEAGGKTEL 214 Query: 189 IDMGGDEAADALSKGKIDVAFLMGESAAPATMGKLLRTSGVRLLDFSQASAYTRRFSYLN 248 +DMGGDEAA AL+ KID AFLMG+SA+P TMG+LL T G+RLLDFSQA AY RRFSYLN Sbjct: 215 LDMGGDEAAQALTDSKIDAAFLMGDSASPPTMGRLLHTPGIRLLDFSQAGAYARRFSYLN 274 Query: 249 ELTLPPGVFDFRRNLPDHTIRLIAPTAELIARDDLHPALSDLLIEAAREVHGKASVLQKA 308 EL +P GVFD +N+P IRLIAPTAELIAR+DLHPALSDLLI+AA+EVH +VLQ+A Sbjct: 275 ELNMPKGVFDLGQNIPSRDIRLIAPTAELIAREDLHPALSDLLIDAAKEVHSGPNVLQRA 334 Query: 309 GEFPAPLVHEYPISDDAARYYKSGKSFFYRTLPFWLASLVDRTMVILLPIILLLIPGIKL 368 GEFPAPL HE+ ISDDA RYYKSGK FFYRTLPFWLASLVDRT+V+LLPIILLLIPG KL Sbjct: 335 GEFPAPLAHEFRISDDATRYYKSGKGFFYRTLPFWLASLVDRTLVVLLPIILLLIPGFKL 394 Query: 369 VPLLYGWRIRSRIYKWYGVLITLERG--VTTHTKEEQEQMLKQLDEIETSVNRMKMPLAF 426 VPLLYGWRI+SRIY+WYG+LI LER V T T E+Q Q+LK+LD IE SVNRMKMPLAF Sbjct: 395 VPLLYGWRIKSRIYRWYGILIALERAAVVDTDTPEQQAQLLKKLDHIEDSVNRMKMPLAF 454 Query: 427 ADQFYVLREHIGFVRSRL 444 ADQFYVLREHIGFVRSRL Sbjct: 455 ADQFYVLREHIGFVRSRL 472 >ref|YP_003776703.1| TRAP-type uncharacterized transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64795.1| TRAP-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/458 (69%), Positives = 378/458 (82%), Gaps = 12/458 (2%) Query: 2 EKTTAPRKHSVSAMKARFVAISWRDLAVSFGPMVLLIIVGVWLAIWLIHPAPPKTITIAT 61 +K + S + ++ARFVAISWRDLAVSFGP++LLI+VG WL IWLI PAPP +ITIA Sbjct: 4 DKKLSAYAPSATRIRARFVAISWRDLAVSFGPIILLILVGAWLVIWLIRPAPPSSITIAA 63 Query: 62 GPEHSNFWNVAEKYKNILARDGVTVKIVASEGSLDNLRKLVDPDGDVDVAFVQGGIADSV 121 GP+ SNFW VAE+YK ILARDG+ + IV + GSLDNL++LVD D D+DV FVQGG+A +V Sbjct: 64 GPKDSNFWRVAERYKTILARDGIKLDIVETGGSLDNLKRLVDSDQDIDVGFVQGGLAGAV 123 Query: 122 DID---SLVSLGSVAYSPVSVFYRNDKV---------VSRLSELTGKSIAIGLQGSGSRV 169 D SLVSLGS++Y PVSV+YR+ + + +LSEL GK IAIG QGSGS V Sbjct: 124 PADAMGSLVSLGSISYVPVSVYYRSASINAEGKPIPPLRQLSELAGKRIAIGGQGSGSSV 183 Query: 170 LALTLLKASGIEPGGATKLIDMGGDEAADALSKGKIDVAFLMGESAAPATMGKLLRTSGV 229 LA TLLKA+G+E GGAT+L+++GGDEAA AL+ GKID AFLMG+S + ATMGKLLR GV Sbjct: 184 LAATLLKANGVEAGGATQLLNIGGDEAAQALTSGKIDAAFLMGDSVSVATMGKLLRAPGV 243 Query: 230 RLLDFSQASAYTRRFSYLNELTLPPGVFDFRRNLPDHTIRLIAPTAELIARDDLHPALSD 289 RLLDFSQA AY RRF YLN L +P GVFD RNLP +LIAPTAEL+AR+DLHPALSD Sbjct: 244 RLLDFSQAEAYVRRFRYLNTLKMPMGVFDLARNLPARDTQLIAPTAELVAREDLHPALSD 303 Query: 290 LLIEAAREVHGKASVLQKAGEFPAPLVHEYPISDDAARYYKSGKSFFYRTLPFWLASLVD 349 LLIEAA EVHGKA+V+QKAGEFPAPL HEY ISDDAARYYKSGK+FFYRTLPFWLASL+D Sbjct: 304 LLIEAAHEVHGKANVMQKAGEFPAPLEHEYRISDDAARYYKSGKTFFYRTLPFWLASLLD 363 Query: 350 RTMVILLPIILLLIPGIKLVPLLYGWRIRSRIYKWYGVLITLERGVTTHTKEEQEQMLKQ 409 R +VI+LP+ILLLIPGI+LVP+LYGWR+RSRIY+WYG LI LERG++ + +EQ +LK+ Sbjct: 364 RAVVIVLPVILLLIPGIRLVPMLYGWRVRSRIYRWYGELIALERGISRDSPQEQADILKR 423 Query: 410 LDEIETSVNRMKMPLAFADQFYVLREHIGFVRSRLESG 447 LDEIE +VNRMKMPLAFADQFYVLREHIGFVR+RL +G Sbjct: 424 LDEIEMAVNRMKMPLAFADQFYVLREHIGFVRARLAAG 461 >ref|YP_003604187.1| hypothetical protein BC1002_0575 [Burkholderia sp. CCGE1002] gb|ADG14676.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 467 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 275/431 (63%), Positives = 343/431 (79%), Gaps = 4/431 (0%) Query: 17 ARFVAISWRDLAVSFGPMVLLIIVGVWLAIWLIHPAPPKTITIATGPEHSNFWNVAEKYK 76 ARFVAISWRDLAVSFGP+VLL+IV +W A+ LI PAPP T+TI+ GP S FW A+KYK Sbjct: 15 ARFVAISWRDLAVSFGPLVLLVIVAIWAAVRLIQPAPPNTLTISAGPIGSTFWIAAQKYK 74 Query: 77 NILARDGVTVKIVASEGSLDNLRKLVDPDGDVDVAFVQGGIADS-VDID-SLVSLGSVAY 134 ILAR+ +T+ ++AS+GS +NL++L+DP +VDV FVQ GIA + VD D SL+SLGSVAY Sbjct: 75 AILARNRITLNVLASQGSQENLKRLLDPQANVDVGFVQSGIAPAAVDKDKSLMSLGSVAY 134 Query: 135 SPVSVFYRNDKVVSRLSELTGKSIAIGLQGSGSRVLALTLLKASGIEPGGATKLIDMGGD 194 P+++FYR V LS G+ +AIG +GSG+R LAL LLKA+GI PGG T+L+ + GD Sbjct: 135 VPLAIFYRGAPV-DWLSGFKGERLAIGPEGSGTRELALALLKANGIVPGGPTQLLPLTGD 193 Query: 195 EAADALSKGKIDVAFLMGESAAPATMGKLLRTSGVRLLDFSQASAYTRRFSYLNELTLPP 254 AADAL G ID FL G+SA PA MGKL RT VR DFSQA AYTRRF YL +L +P Sbjct: 194 AAADALIDGTIDATFLAGDSAQPAVMGKLYRTGNVRFYDFSQADAYTRRFPYLTQLKVPM 253 Query: 255 GVFDFRRNLPDHTIRLIAPTAELIARDDLHPALSDLLIEAAREVHGKASVLQKAGEFPAP 314 G FD +NLP ++I ++APTAELIARD LHPALSDLLIEAAREVHG A+ +Q+AGEFPAP Sbjct: 254 GAFDLGKNLPANSISIVAPTAELIARDSLHPALSDLLIEAAREVHGGATTMQRAGEFPAP 313 Query: 315 LVHEYPISDDAARYYKSGKSFFYRTLPFWLASLVDRTMVILLPIILLLIPGIKLVPLLYG 374 L H++P+SDDAARYYKSGKSF YRTLPFW+ASL DR +VI++P+I+LL+P +++VP LY Sbjct: 314 LAHDFPLSDDAARYYKSGKSFLYRTLPFWIASLADRLLVIVVPLIVLLVPALRVVPGLYA 373 Query: 375 WRIRSRIYKWYGVLITLER-GVTTHTKEEQEQMLKQLDEIETSVNRMKMPLAFADQFYVL 433 WR++SRIY+WYG LI +ER ++ H+ E+ ++++LD IE SVN MKMPLA+ADQFYVL Sbjct: 374 WRVKSRIYRWYGALIAIERSALSEHSSAERASLIERLDTIEDSVNGMKMPLAYADQFYVL 433 Query: 434 REHIGFVRSRL 444 REHIGFVR RL Sbjct: 434 REHIGFVRRRL 444 >ref|YP_003905821.1| hypothetical protein BC1003_0527 [Burkholderia sp. CCGE1003] gb|ADN56530.1| hypothetical protein BC1003_0527 [Burkholderia sp. CCGE1003] Length = 535 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 273/445 (61%), Positives = 352/445 (79%), Gaps = 4/445 (0%) Query: 3 KTTAPRKHSVSAMK--ARFVAISWRDLAVSFGPMVLLIIVGVWLAIWLIHPAPPKTITIA 60 K A RK + + ARFVAISWRDLAVSFGP++L+ + +W+A+ LI PAPP T+TI+ Sbjct: 2 KPAAGRKPATRPTRLVARFVAISWRDLAVSFGPILLIAVAAIWVAVRLIQPAPPSTLTIS 61 Query: 61 TGPEHSNFWNVAEKYKNILARDGVTVKIVASEGSLDNLRKLVDPDGDVDVAFVQGGIADS 120 GP+ S FWN A+KYK ILAR+ +T+ ++ SEGSL NL++L DP+ +VDVAFVQ GIA Sbjct: 62 AGPQGSTFWNAAQKYKEILARNRITLNVLPSEGSLQNLQRLSDPNSNVDVAFVQDGIAPG 121 Query: 121 VDIDSLVSLGSVAYSPVSVFYRNDKVVSRLSELTGKSIAIGLQGSGSRVLALTLLKASGI 180 + L+SLGSV+Y P+++FY + V+RLSE G+ +A+G +GSG+R LAL LLKA+GI Sbjct: 122 AASNGLMSLGSVSYVPLAIFY-HGPTVTRLSEFKGQRLAVGAEGSGTRQLALALLKANGI 180 Query: 181 EPGGATKLIDMGGDEAADALSKGKIDVAFLMGESAAPATMGKLLRTSGVRLLDFSQASAY 240 EPGGAT+L+ + GD+AA AL GK+D AFL G+SA PA MGKL RT V+ DF+QA AY Sbjct: 181 EPGGATRLLPLSGDDAAQALVSGKVDAAFLAGDSAQPAVMGKLYRTPNVQFYDFTQADAY 240 Query: 241 TRRFSYLNELTLPPGVFDFRRNLPDHTIRLIAPTAELIARDDLHPALSDLLIEAAREVHG 300 TRRF YL +L LP G FD +NLP I ++APTAEL+AR+ LHPALSDLLIEAAREVHG Sbjct: 241 TRRFPYLTQLELPMGAFDLGKNLPSMPIHMVAPTAELVARNSLHPALSDLLIEAAREVHG 300 Query: 301 KASVLQKAGEFPAPLVHEYPISDDAARYYKSGKSFFYRTLPFWLASLVDRTMVILLPIIL 360 KA+++Q+AGEFPAPL H++PISDDAARYYKSGKSF YR LPFWLASL DR +V+++P+++ Sbjct: 301 KANIMQRAGEFPAPLAHDFPISDDAARYYKSGKSFLYRLLPFWLASLADRLLVVVVPLVV 360 Query: 361 LLIPGIKLVPLLYGWRIRSRIYKWYGVLITLER-GVTTHTKEEQEQMLKQLDEIETSVNR 419 LLIP ++LVP LY WR++SRIY+WYG LI +ER ++ H+ E+ + ++LD IE SVN Sbjct: 361 LLIPALRLVPSLYAWRVKSRIYRWYGALIAIERSALSDHSAAERASLRQRLDAIEDSVNG 420 Query: 420 MKMPLAFADQFYVLREHIGFVRSRL 444 +KMPLA+ADQFYVLREHIGFVR+RL Sbjct: 421 LKMPLAYADQFYVLREHIGFVRARL 445 >ref|YP_001894445.1| hypothetical protein Bphyt_0798 [Burkholderia phytofirmans PsJN] gb|ACD15221.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 497 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/437 (62%), Positives = 348/437 (79%), Gaps = 2/437 (0%) Query: 9 KHSVSAMKARFVAISWRDLAVSFGPMVLLIIVGVWLAIWLIHPAPPKTITIATGPEHSNF 68 + S + ARFVAISWRDLAVSFGP++L++ V +W+A+ LI PAPP T+TI+ GPE S F Sbjct: 7 RKSPPRLVARFVAISWRDLAVSFGPILLIVAVAIWVAVRLIQPAPPSTLTISAGPEGSTF 66 Query: 69 WNVAEKYKNILARDGVTVKIVASEGSLDNLRKLVDPDGDVDVAFVQGGIADSVDIDSLVS 128 WN A+KYK ILAR+ +T+K++ SEGSL NL++L DP DVDV FVQ G+A + L+S Sbjct: 67 WNAAQKYKEILARNRITLKVLPSEGSLQNLKRLSDPKSDVDVGFVQDGVAPGPAAEGLMS 126 Query: 129 LGSVAYSPVSVFYRNDKVVSRLSELTGKSIAIGLQGSGSRVLALTLLKASGIEPGGATKL 188 LGSVAY P+++FY + V+RLSE G+ +A+G +GSG+R LAL LLKA+GI PGGATKL Sbjct: 127 LGSVAYVPLAIFY-HGPTVTRLSEFKGERLAVGAEGSGTRELALALLKANGIVPGGATKL 185 Query: 189 IDMGGDEAADALSKGKIDVAFLMGESAAPATMGKLLRTSGVRLLDFSQASAYTRRFSYLN 248 + + GD+AA AL GK+D AFL G+SA PA MGKL RT V+ DFSQA AYTRRF YL Sbjct: 186 LPLSGDDAAQALVSGKVDAAFLAGDSAQPAVMGKLYRTPNVQFYDFSQADAYTRRFPYLT 245 Query: 249 ELTLPPGVFDFRRNLPDHTIRLIAPTAELIARDDLHPALSDLLIEAAREVHGKASVLQKA 308 +L +P G FD +NLP I ++APTAEL+ARD LHPALSDLLIEAAREVHGKA+++Q+A Sbjct: 246 QLEMPMGAFDLGKNLPSAPIHMVAPTAELVARDSLHPALSDLLIEAAREVHGKANIMQRA 305 Query: 309 GEFPAPLVHEYPISDDAARYYKSGKSFFYRTLPFWLASLVDRTMVILLPIILLLIPGIKL 368 GEFPAPL H++PISDDAARYYKSGKSF YR LPFWLASL DR +V+++P+I+LL+P ++L Sbjct: 306 GEFPAPLAHDFPISDDAARYYKSGKSFLYRILPFWLASLADRLLVVVVPLIVLLVPALRL 365 Query: 369 VPLLYGWRIRSRIYKWYGVLITLER-GVTTHTKEEQEQMLKQLDEIETSVNRMKMPLAFA 427 VP LY WR++SRIY+WYG LI +ER ++ H+ E+ ++++LD IE SVN +KMPLA+A Sbjct: 366 VPSLYAWRVKSRIYRWYGALIAIERSALSDHSPSERASLIERLDAIEESVNGLKMPLAYA 425 Query: 428 DQFYVLREHIGFVRSRL 444 DQFYVLREHIGFVR RL Sbjct: 426 DQFYVLREHIGFVRQRL 442