BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0008.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001022682.1| two component LuxR family transcriptional re... 258 4e-67 ref|YP_547156.1| two component LuxR family transcriptional regul... 244 7e-63 ref|ZP_08405889.1| two component LuxR family transcriptional reg... 243 1e-62 ref|YP_524974.1| two component LuxR family transcriptional regul... 235 3e-60 emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter put... 234 4e-60 >ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 226 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 130/224 (58%), Positives = 165/224 (73%), Gaps = 12/224 (5%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAI-----DLVLLDI 55 MIR+++CDDH IVR+G+KQILAD DI +A E +GP+ + R A D+VLLDI Sbjct: 1 MIRVVICDDHVIVRQGIKQILADAGDIALAGEAGNGPDAMTLVRAGAAAGTPPDVVLLDI 60 Query: 56 AIPLQDGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAI 115 A+P +DGLDVL+ LK E PRLPVLMLSTYP++QYA R +LGAAGYLNKSAD+EQ++ AI Sbjct: 61 AMPQRDGLDVLKSLKAEFPRLPVLMLSTYPDRQYAVRSLKLGAAGYLNKSADSEQMIDAI 120 Query: 116 RKAADGGVYVSLHMAETLAAELSAHSASTQRAA-------HETLSHREYQVFQLIAAGRS 168 R+ A G ++++ +AE LA + A S + HE LSHREYQVF L+AAG+S Sbjct: 121 RRVAQGKLFITPSVAEQLAGAVGAGIGSRKGGVGDDEAPLHERLSHREYQVFGLLAAGKS 180 Query: 169 VKEIADQLTLSPNTVSTYRSRILEKTGAGNDVGIAMYAVRHQLL 212 V EIA+QL LS NTVSTYR+RILEKTG NDV +A+YAVR +L+ Sbjct: 181 VGEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQELM 224 >ref|YP_547156.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE42258.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 222 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 130/215 (60%), Positives = 164/215 (76%), Gaps = 9/215 (4%) Query: 2 IRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAI------DLVLLDI 55 ++IL+ DDHRIVREGLKQ+LAD +IEV AE GP++L+ RV+A+ D VLLDI Sbjct: 4 VKILIGDDHRIVREGLKQVLADAPEIEVVAEAETGPDILQ--RVDALGGDSGLDAVLLDI 61 Query: 56 AIPLQDGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAI 115 A+P +DGLDVL+ LK+ PRL VLMLSTYPEKQYA RC +LGAAGYLNKSA + ++AA+ Sbjct: 62 ALPERDGLDVLQALKKSWPRLAVLMLSTYPEKQYAVRCIKLGAAGYLNKSAHPDDMIAAV 121 Query: 116 RKAADGGVYVSLHMAETLAAEL-SAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIAD 174 RK A GGVYVS AE LA+ + ++ + + E+LSHRE+QVF+L+ AG+SV EI Sbjct: 122 RKVATGGVYVSAIAAEALASAVGNSATKTGGGGGTESLSHREHQVFRLLTAGKSVGEIGA 181 Query: 175 QLTLSPNTVSTYRSRILEKTGAGNDVGIAMYAVRH 209 QL L+PNTVSTYR+RILEKTG NDV +A+YA RH Sbjct: 182 QLNLAPNTVSTYRARILEKTGTRNDVELALYAERH 216 >ref|ZP_08405889.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI77010.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 214 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 132/210 (62%), Positives = 161/210 (76%), Gaps = 8/210 (3%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEA--IDLVLLDIAIP 58 ++RIL+ DDHRIVREGLKQIL+D ++V AE A GP+VL + +V A +DLVLLDIA+P Sbjct: 4 LLRILIGDDHRIVREGLKQILSDDPGVQVVAEAATGPDVLEQVQVMADRLDLVLLDIALP 63 Query: 59 LQDGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKA 118 +DGLDVL+QL+ PRLPVLMLSTYPE+QYAARC +LGAAGYLNKSAD + ++AA+RKA Sbjct: 64 GRDGLDVLQQLRTAHPRLPVLMLSTYPERQYAARCIKLGAAGYLNKSADPDVMLAAVRKA 123 Query: 119 ADGGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTL 178 A GGV+V T AA + A R E LSHRE+QVF+L+ GRSV EI QL L Sbjct: 124 AAGGVFV------TPAAAEALAGAVAGRGGAEALSHREHQVFRLLIQGRSVSEIGAQLGL 177 Query: 179 SPNTVSTYRSRILEKTGAGNDVGIAMYAVR 208 +PNTVSTYR+RILEKTG NDV +A+YA R Sbjct: 178 APNTVSTYRARILEKTGTKNDVELALYAER 207 >ref|YP_524974.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD71443.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 225 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/220 (59%), Positives = 160/220 (72%), Gaps = 13/220 (5%) Query: 1 MIRILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARVEAI------DLVLLD 54 MI++L+ DDHRIVREGLKQ+LAD D+ V AE A GPEVL A+V+A+ DLVLLD Sbjct: 1 MIKVLIGDDHRIVREGLKQVLADAPDVSVLAEAASGPEVL--AQVQALGGSAGLDLVLLD 58 Query: 55 IAIPLQDGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAA 114 IA+P QDGL+VL+ L++ P LPVLMLSTYPEKQYA RC +LGA GYLNKSAD + +VAA Sbjct: 59 IAMPQQDGLEVLQILRRTHPTLPVLMLSTYPEKQYAVRCIKLGAGGYLNKSADPDDMVAA 118 Query: 115 IRKAADGGVYVS-----LHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSV 169 +RK A GG+YV+ A +A S +A A + LSHREYQVF+L++ G +V Sbjct: 119 VRKVAAGGMYVTPDTAEALAAAMASAGRSGAAAQAVVAGVDALSHREYQVFRLLSMGHAV 178 Query: 170 KEIADQLTLSPNTVSTYRSRILEKTGAGNDVGIAMYAVRH 209 EI QL L+ NTVSTYR+RILEKTG NDV +A+YA RH Sbjct: 179 GEIGAQLKLASNTVSTYRARILEKTGTKNDVELALYAQRH 218 >emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 235 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/208 (59%), Positives = 150/208 (72%), Gaps = 8/208 (3%) Query: 3 RILLCDDHRIVREGLKQILADTSDIEVAAECADGPEVLRKARV----EAIDLVLLDIAIP 58 RIL+ DDHRIVREGLKQ+LAD +D+ V AE A GPEVL + + VLLDIA+P Sbjct: 23 RILIGDDHRIVREGLKQVLADAADLHVVAEAASGPEVLEAVQALGGNAGLSAVLLDIAMP 82 Query: 59 LQDGLDVLRQLKQEMPRLPVLMLSTYPEKQYAARCYRLGAAGYLNKSADTEQLVAAIRKA 118 +DGLDVL+ LK P+LPVLMLSTYPEKQYA RC +LGAAGYLNK AD + ++AA+RK Sbjct: 83 GRDGLDVLQVLKATWPKLPVLMLSTYPEKQYAVRCIKLGAAGYLNKGADPDDMIAAVRKV 142 Query: 119 ADGGVYVSLHMAETLAAELSAHSASTQRAAHETLSHREYQVFQLIAAGRSVKEIADQLTL 178 A GGVYVS A L++ A+ E LSHRE+QVF+L+ AG++V EI QL L Sbjct: 143 ASGGVYVS----AQAAEALASAVANAAHQGAEALSHREHQVFRLLTAGKTVGEIGAQLGL 198 Query: 179 SPNTVSTYRSRILEKTGAGNDVGIAMYA 206 + NTVSTYR RILEKTG NDV +A+YA Sbjct: 199 ASNTVSTYRQRILEKTGTKNDVELALYA 226