BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0046.p         (236 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbas...   471   e-131
ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein ...   461   e-128
ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit ...   441   e-122
ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit ...   441   e-122
ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [...   439   e-121

>ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbaspirillum seropedicae
           SmR1]
 emb|CAM32703.1| Succinate dehydrogenase Fe-S protein subunit protein
           [Herbaspirillum seropedicae]
 gb|ADJ64460.1| succinate dehydrogenase Fe-S subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 236

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/236 (97%), Positives = 233/236 (98%)

Query: 1   MTRTLKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           MTRTLKFKIYRYDPDKD+KPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG
Sbjct: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLAC TNLNEL+EPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL
Sbjct: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236
           ADSRDEATG RLD+LEDPYRLFRCRSIMNCVDVCPKGLNPN AIGKIKELMVRR+V
Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236


>ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans
           Ter331]
 gb|AEK61581.1| Succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans
           Ter331]
          Length = 237

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/235 (94%), Positives = 231/235 (98%)

Query: 2   TRTLKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGV 61
           +RTLKFKIYRYDPDKD KPYMQDLTVEL PTDKMLLDALQRIK+DVDDSLALRRSCREGV
Sbjct: 3   SRTLKFKIYRYDPDKDAKPYMQDLTVELLPTDKMLLDALQRIKADVDDSLALRRSCREGV 62

Query: 62  CGSDAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLI 121
           CGSDAMNINGKNGLACTTNLNEL+EPIVLKPLPGLPVIRDLIVDMT FFKQY+SIKP+LI
Sbjct: 63  CGSDAMNINGKNGLACTTNLNELTEPIVLKPLPGLPVIRDLIVDMTQFFKQYESIKPFLI 122

Query: 122 NDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 181
           ND+IPPEKERLQ+PEQREELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA
Sbjct: 123 NDNIPPEKERLQTPEQREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 182

Query: 182 DSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236
           DSRDEATG RLD+LEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV
Sbjct: 183 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 237


>ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit [Janthinobacterium sp.
           Marseille]
 gb|ABR89231.1| succinate dehydrogenase iron-sulfur protein [Janthinobacterium sp.
           Marseille]
          Length = 236

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/236 (88%), Positives = 222/236 (94%)

Query: 1   MTRTLKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL+ +IYRYDPDKD KPYMQD+TVEL   DKMLLDALQRIK+ VDDSLALRRSCREG
Sbjct: 1   MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKATVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLACTTNLNEL+EPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236
           ADSRD ATG RLD+LEDPYRLFRC +IMNCVDVCPKGLNP  AIGKIKELMVRRAV
Sbjct: 181 ADSRDHATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELMVRRAV 236


>ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit [Herminiimonas
           arsenicoxydans]
 emb|CAL61931.1| succinate dehydrogenase (ubiquinone), Fe-S protein [Herminiimonas
           arsenicoxydans]
          Length = 236

 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/236 (88%), Positives = 224/236 (94%)

Query: 1   MTRTLKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL+ +IYRYDPDKD KPYMQD+TVEL   DKMLLDALQRIK+DVDD+L+LRRSCREG
Sbjct: 1   MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKADVDDTLSLRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLACTTNLNEL+EPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236
           ADSRDEATG RLD+LEDPYRLFRC +IMNCVDVCPKGLNP  AIGKIKEL+VRRAV
Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELLVRRAV 236


>ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33036.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 236

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/236 (88%), Positives = 223/236 (94%)

Query: 1   MTRTLKFKIYRYDPDKDEKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL F+IYRYDPDKD KPYMQ LTVEL+ TDKMLLDALQRIK+DVDDSLALRRSCREG
Sbjct: 1   MPRTLNFEIYRYDPDKDAKPYMQKLTVELQDTDKMLLDALQRIKADVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACTTNLNELSEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLACTTNL EL +PIVL+PLPGLPVIRDLIVDMT FFKQY+SIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLKELKQPIVLRPLPGLPVIRDLIVDMTQFFKQYNSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IN +IPPEKERLQSP +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INTTIPPEKERLQSPTEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGQRLDDLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 236
           AD+RDEAT +RLD+LEDPYRLFRC SIMNCVDVCPKGLNPN AIGKIKE+MVRRAV
Sbjct: 181 ADTRDEATAERLDNLEDPYRLFRCHSIMNCVDVCPKGLNPNKAIGKIKEMMVRRAV 236