BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0035.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum sero... 314 2e-84 ref|ZP_08273448.1| Positive regulator of CheA protein activity (... 285 1e-75 ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Jant... 283 9e-75 ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiim... 276 6e-73 ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 2... 270 7e-71 >ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64469.1| CheW chemotaxis protein, positive regulator of CheA protein activity [Herbaspirillum seropedicae SmR1] Length = 168 Score = 314 bits (805), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 157/168 (93%), Positives = 164/168 (97%) Query: 1 MSDTISKNISGFGEKSDSAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPEFIK 60 MSDT SKN+SGFGEK+DS GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSP+FIK Sbjct: 1 MSDTASKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK 60 Query: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNISGRVVGMVVDSVSDVITLSPEQI 120 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNI GRVVGMVVDSVSDVITL+ EQI Sbjct: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI 120 Query: 121 KPAPEMGTTFDSDYLIGLGTLDERMLILVDIDKLMSSADMGLIEKLAA 168 KPAPEMGTTFDSDYLIGLGTL++RMLILVDIDKLMSSA+MGLIEKLAA Sbjct: 121 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 >ref|ZP_08273448.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33082.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] Length = 170 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 143/170 (84%), Positives = 154/170 (90%), Gaps = 2/170 (1%) Query: 1 MSDTISKNISGFGEKSDS--AGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPEF 58 MS+ N G K+ + AGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+PEF Sbjct: 1 MSEAAQINAQVLGAKATAEIAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEF 60 Query: 59 IKGVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNISGRVVGMVVDSVSDVITLSPE 118 +KGVVNLRGIIVPIVDMRIKF LGEPTYDQFTVVIILNI GRV+GMVVDSVSDVITLS E Sbjct: 61 VKGVVNLRGIIVPIVDMRIKFNLGEPTYDQFTVVIILNIGGRVMGMVVDSVSDVITLSAE 120 Query: 119 QIKPAPEMGTTFDSDYLIGLGTLDERMLILVDIDKLMSSADMGLIEKLAA 168 QIKPAPEMGT F++DYLIGLGTLDERMLIL+DIDKLMSSA+MGLIEK+AA Sbjct: 121 QIKPAPEMGTAFNTDYLIGLGTLDERMLILIDIDKLMSSAEMGLIEKIAA 170 >ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89007.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 163 Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 143/168 (85%), Positives = 151/168 (89%), Gaps = 5/168 (2%) Query: 1 MSDTISKNISGFGEKSDSAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPEFIK 60 M I N +G GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+PEF+K Sbjct: 1 MIHNIQNNTTG-----AENGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEFVK 55 Query: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNISGRVVGMVVDSVSDVITLSPEQI 120 GVVNLRGIIVPIVDMRIKF LGEPTYDQFTVVIILNI GRVVGMVVDSVSDVITLSPEQI Sbjct: 56 GVVNLRGIIVPIVDMRIKFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQI 115 Query: 121 KPAPEMGTTFDSDYLIGLGTLDERMLILVDIDKLMSSADMGLIEKLAA 168 KPAPEMGT F++DYLIGLGTLDERMLILVDIDKLMSS++MGLIEK+AA Sbjct: 116 KPAPEMGTAFNTDYLIGLGTLDERMLILVDIDKLMSSSEMGLIEKIAA 163 >ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL61475.1| Chemotaxis protein CheW [Herminiimonas arsenicoxydans] Length = 163 Score = 276 bits (707), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 136/151 (90%), Positives = 143/151 (94%) Query: 18 SAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPEFIKGVVNLRGIIVPIVDMRI 77 GNEFLAFTLG+EEYGIDILKVQEIRGYE VTRIAN+PEF+KGVVNLRGIIVPIVDMRI Sbjct: 13 KTGNEFLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFVKGVVNLRGIIVPIVDMRI 72 Query: 78 KFQLGEPTYDQFTVVIILNISGRVVGMVVDSVSDVITLSPEQIKPAPEMGTTFDSDYLIG 137 KF LGEPTYDQFTVVIILNI GRVVGMVVDSVSDVITLSPEQIKPAPEMGT F++DYLIG Sbjct: 73 KFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLIG 132 Query: 138 LGTLDERMLILVDIDKLMSSADMGLIEKLAA 168 LGTLDERMLILVDIDKLMSS +MGLIE +AA Sbjct: 133 LGTLDERMLILVDIDKLMSSEEMGLIENIAA 163 >ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 25259] gb|AAZ97576.1| CheW protein [Thiobacillus denitrificans ATCC 25259] Length = 167 Score = 270 bits (689), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 130/154 (84%), Positives = 147/154 (95%) Query: 15 KSDSAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPEFIKGVVNLRGIIVPIVD 74 +++ GNE+LAFTLG+EEYGIDIL+VQEIRGYE VTRIAN+P FIKGVVNLRG IVP+VD Sbjct: 14 EAEGDGNEYLAFTLGREEYGIDILRVQEIRGYEPVTRIANAPAFIKGVVNLRGTIVPVVD 73 Query: 75 MRIKFQLGEPTYDQFTVVIILNISGRVVGMVVDSVSDVITLSPEQIKPAPEMGTTFDSDY 134 MRIKF LGEPTYDQFTVVIILNI GRVVGMVVDSVSDV+TL+PEQ+KPAPE+GTTFD+DY Sbjct: 74 MRIKFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVMTLAPEQVKPAPEIGTTFDTDY 133 Query: 135 LIGLGTLDERMLILVDIDKLMSSADMGLIEKLAA 168 LIGLGTLD+RMLILVDIDKLMSS++MGLI+KLAA Sbjct: 134 LIGLGTLDDRMLILVDIDKLMSSSEMGLIDKLAA 167