BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0031.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776381.1| flagellar motor component protein [Herbaspir... 525 e-147 ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas ... 449 e-124 ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus f... 430 e-118 ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacter... 421 e-116 ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus deni... 418 e-115 >ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 272/313 (86%), Positives = 292/313 (93%), Gaps = 5/313 (1%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE Sbjct: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITS-KRSVRAAQAELEK 119 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQ+GQLRKGE D+T+ K++++ AQ ELEK Sbjct: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQAQQELEK 120 Query: 120 AERARLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 179 ER RL+ELK R+E AIDS+PTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ Sbjct: 121 MERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 Query: 180 PYTREILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGG 239 PYT+EIL EIG+TLNDVPNKISLSGHTDATPYS GEKGYSNWELSADRANASRRELI GG Sbjct: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGG 240 Query: 240 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVQNGGSSSLDVSSEA-- 297 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE+V+ S SL+V ++A Sbjct: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEEMVEK-DSGSLNVPTDASD 299 Query: 298 -EVKDGLSEPAKN 309 EV+ GL+ PA+N Sbjct: 300 GEVQQGLNVPARN 312 >ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans] emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas arsenicoxydans] Length = 327 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/301 (76%), Positives = 262/301 (87%), Gaps = 2/301 (0%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPIIVKRIKK GGGHHGGAWKIAYADFVTAMMAFFLLMWLLGST KG+L GIA+ Sbjct: 1 MADEGLRPIIVKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQGIAD 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKR-SVRAAQAELEK 119 YF TPLKVAMAGGSGSGDA +V+ GGGKD+TR +GQ +KGEN +K +++ A+AELE+ Sbjct: 61 YFSTPLKVAMAGGSGSGDATSVIKGGGKDMTRIDGQQKKGENLTPTKSLNLKDAEAELER 120 Query: 120 AERARLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 179 E RL LK+RIE AIDS P+L+Q+KNQLL+DITSEGLRIQIVDEKNRPMFAL+ A LQ Sbjct: 121 QEMNRLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQ 180 Query: 180 PYTREILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGG 239 PYT+ IL EI KTLND+PN+ISLSGHTDATPYSSGEK YSNWELS+DRANASRRELI+GG Sbjct: 181 PYTKLILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGG 240 Query: 240 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVQNGGSSSLDVSSEAEV 299 M+E+K+LRVVGLSSAVL D++DP NPINRRISIIVMNKK E+ + + +LDV SEA Sbjct: 241 MEEAKMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKKTEDSITK-ANRTLDVVSEATA 299 Query: 300 K 300 K Sbjct: 300 K 300 >ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT] gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 308 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/294 (70%), Positives = 248/294 (84%), Gaps = 3/294 (1%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MA E +R I+VKRI K GGHHGGAWKIAYADFVTAMMAFFLLMWLLGST K DL GI+E Sbjct: 1 MAKENVR-IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISE 59 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGEN-DITSKRSVRAAQAELEK 119 YFKTPLKVAM GGSG+G +++VL GGG D+T+++GQ+R+ E+ D K ++ AQ E+ K Sbjct: 60 YFKTPLKVAMQGGSGAGASDSVLKGGGNDMTKKQGQIRRAEDIDARKKPDLKTAQEEVAK 119 Query: 120 AERARLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 179 AE +L ELK+RIE AID+S TL+QFK QLL+DIT+EGLRIQIVDE+NRPMFA + A+LQ Sbjct: 120 AELEKLKELKRRIEEAIDASETLRQFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQ 179 Query: 180 PYTREILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGG 239 PY R+IL EIG+ LNDVPNKISLSGHTDA PY SGE+ YSNWELS+DRANASRREL+SGG Sbjct: 180 PYARQILHEIGQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGG 239 Query: 240 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKA-EELVQNGGSSSLD 292 M E K+LRVVGLSSAVL DK++P NPINRRISII+MNKKA EE + + GS+ ++ Sbjct: 240 MKEEKLLRVVGLSSAVLFDKDNPLNPINRRISIIIMNKKAEEETINDYGSAEVE 293 >ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille] gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 328 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/304 (73%), Positives = 261/304 (85%), Gaps = 2/304 (0%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPII+KRIKK GGGHHGGAWKIAYADFVTAMMAFFLLMWLLGST KGDL GIA+ Sbjct: 1 MADEGLRPIIIKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQGIAD 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSKR-SVRAAQAELEK 119 +F TPLKVAMAGGSGSGD+++V+ GGGKD+TR +GQ +KGE+ +K +++AA+AELE+ Sbjct: 61 FFSTPLKVAMAGGSGSGDSSSVIKGGGKDMTRIDGQQKKGEDLTPAKNFNLKAAEAELER 120 Query: 120 AERARLDELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 179 E RL LK+RIE AID+ P L+QFKNQLLIDIT+EGLRIQIVDEKNRPMFALA A+LQ Sbjct: 121 QEVNRLKALKERIEKAIDTIPGLQQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQ 180 Query: 180 PYTREILREIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGG 239 PYT+ IL EI K LND+PN+ISLSGHTDATPYSSGEK YSNWELS+DRANASRRELI+GG Sbjct: 181 PYTKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGG 240 Query: 240 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVQNGGSSSLDVSSEAEV 299 M E+KVLRVVGLSSAVL D DP NP+NRRISIIV+NKKAE+ + + +DVS + Sbjct: 241 MAENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKAEDSITQ-ENKKVDVSDKESA 299 Query: 300 KDGL 303 ++ + Sbjct: 300 QEAV 303 >ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC 25259] gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 319 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/297 (71%), Positives = 248/297 (83%), Gaps = 12/297 (4%) Query: 8 PIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLK 67 PIIVKRIKK GGHHGGAWKIAYADFVTAMMAFFLLMWLLGST +GDL GIAEYFKTPLK Sbjct: 7 PIIVKRIKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYFKTPLK 66 Query: 68 VAMAGGSGSGDANTVLPGGGKDLTRQEGQLRKGENDITSK-RSVRAAQAELEKAERARLD 126 VAM GG+GSGD+++V+ GGG DLTR+ GQ++KGE D K +++AAQAELE+ E A+L Sbjct: 67 VAMQGGTGSGDSSSVIKGGGADLTRKNGQIKKGEVDADRKSYNLKAAQAELERLETAKLK 126 Query: 127 ELKKRIETAIDSSPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTREIL 186 +LK+R+E AID +PTLKQFK QLLIDITSEGLRIQIVDE+NRPMF LASA+LQPYT+ IL Sbjct: 127 QLKQRLEAAIDRNPTLKQFKRQLLIDITSEGLRIQIVDEQNRPMFNLASAELQPYTKVIL 186 Query: 187 REIGKTLNDVPNKISLSGHTDATPYSSGEKGYSNWELSADRANASRRELISGGMDESKVL 246 EI + LNDV N+ISLSGHTDA PY++GE+GYSNWELSADRANASRRELI GGM E+K+L Sbjct: 187 HEIAQVLNDVENRISLSGHTDARPYANGERGYSNWELSADRANASRRELIVGGMSEAKML 246 Query: 247 RVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELV-----------QNGGSSSLD 292 RVVGL+S+V + PF+P+NRRISIIV+NK+ EE + QNG S +LD Sbjct: 247 RVVGLASSVPFTQAKPFDPVNRRISIIVLNKRTEEAITKEASGAEVTDQNGASDALD 303