BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0024.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001100194.1| hypothetical protein HEAR1920 [Herminiimonas...   123   8e-27
ref|YP_003776387.1| signal peptide protein [Herbaspirillum serop...   122   2e-26
ref|YP_001353089.1| hypothetical protein mma_1399 [Janthinobacte...   114   4e-24
ref|YP_004752434.1| hypothetical protein CFU_1779 [Collimonas fu...   106   9e-22
ref|YP_583515.1| hypothetical protein Rmet_1363 [Cupriavidus met...    68   5e-10

>ref|YP_001100194.1| hypothetical protein HEAR1920 [Herminiimonas arsenicoxydans]
 emb|CAL62070.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 75/98 (76%), Gaps = 1/98 (1%)

Query: 1   MLSKPAVLRGTLGDAQVQLSVKPKADED-GLEGKYFVFGQSAQILLAGEVDQNDLMMEES 59
           +  KP  LRGTLGD  VQ+ ++PKA+ D G+EG+YF+FG SA+ILLAGE++   L MEES
Sbjct: 47  LFLKPVTLRGTLGDTDVQVHIRPKAEIDEGIEGEYFIFGNSAKILLAGEIEGEILFMEES 106

Query: 60  HNGKDVSGQWEGSFKNGLLSGTWSTLDGSVTKPFSLKV 97
            NG ++SGQW+G  +  +LSGTW + DGS TKPF+LKV
Sbjct: 107 ENGTNISGQWDGKLEGDMLSGTWMSADGSFTKPFALKV 144


>ref|YP_003776387.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64479.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 78/97 (80%)

Query: 1   MLSKPAVLRGTLGDAQVQLSVKPKADEDGLEGKYFVFGQSAQILLAGEVDQNDLMMEESH 60
           +++   VLRG +   ++QLS++PK +EDGLEG+YF FG S +IL+AGEVD +DL+MEES 
Sbjct: 46  LMTHALVLRGQIDGREIQLSLQPKKNEDGLEGRYFFFGGSPEILVAGEVDGDDLIMEESV 105

Query: 61  NGKDVSGQWEGSFKNGLLSGTWSTLDGSVTKPFSLKV 97
           NGKDVSGQWEG  +   ++GTWS+ DG+VTKPF+L++
Sbjct: 106 NGKDVSGQWEGRRQGQSITGTWSSADGAVTKPFALQL 142


>ref|YP_001353089.1| hypothetical protein mma_1399 [Janthinobacterium sp. Marseille]
 gb|ABR91299.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 1   MLSKPAVLRGTLGDAQVQLSVKPKADED-GLEGKYFVFGQSAQILLAGEVDQNDLMMEES 59
           +  KP   RG +GD  VQ++++PKAD D G+EG+YF+FG S +ILLAGE++ + L MEES
Sbjct: 42  LFHKPVFFRGVVGDINVQVNIRPKADIDEGIEGEYFIFGNSHKILLAGEIEGDQLFMEES 101

Query: 60  HNGKDVSGQWEGSFKNGLLSGTWSTLDGSVTKPFSLK 96
            NG ++SGQW+G  +   L G+W + DG++TKPF+LK
Sbjct: 102 ENGTNISGQWDGKLEGDSLVGSWMSADGTITKPFTLK 138


>ref|YP_004752434.1| hypothetical protein CFU_1779 [Collimonas fungivorans Ter331]
 gb|AEK61611.1| hypothetical protein CFU_1779 [Collimonas fungivorans Ter331]
          Length = 152

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 1   MLSKPAVLRGTLGDAQVQLSVKPKAD-EDGLEGKYFVFGQSAQILLAGEVDQNDLMMEES 59
           + +KP  LRGTLGDA++++ ++ K D  +G++G Y V GQ  +ILLAGE +  D++MEES
Sbjct: 44  LFAKPLTLRGTLGDAKIEMHLQLKPDPTEGIQGTYVVAGQGGKILLAGESENTDVIMEES 103

Query: 60  HNGKDVSGQWEGSFKNGLLSGTWSTLDGSVTKPFSLKVGAP 100
            NGKDVSG+W G+       GTWST D +VTKPF L V  P
Sbjct: 104 VNGKDVSGEWAGTLVGDTFRGTWSTTDDAVTKPFVLVVQQP 144


>ref|YP_583515.1| hypothetical protein Rmet_1363 [Cupriavidus metallidurans CH34]
 gb|ABF08246.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 193

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 3   SKPAVLRGTLGDAQVQLSVKPKAD-EDGLEGKYFVFGQSAQILLAGEVDQNDLMMEESHN 61
           +K  V  GTLGD  V+L V PK D  D L+G+Y +    +  LL+GE +    +MEES +
Sbjct: 61  AKYPVYTGTLGDKPVRLRVAPKTDTRDSLQGEYSIGDGKSVRLLSGEWEDGSFLMEESDD 120

Query: 62  GKDVSGQWEGSF-KNGLLSGTWS-TLDGSVTKPFSLK 96
           G  VSG WEG   + G++ GTW+  L+ ++  PF ++
Sbjct: 121 GTRVSGNWEGQIDQQGVVRGTWTDALNPAIILPFVIR 157