BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0023.p (432 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752433.1| hypothetical protein CFU_1778 [Collimonas fu... 816 0.0 ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirill... 800 0.0 ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobac... 790 0.0 ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase ... 773 0.0 ref|YP_725947.1| hypothetical protein H16_A1444 [Ralstonia eutro... 726 0.0 >ref|YP_004752433.1| hypothetical protein CFU_1778 [Collimonas fungivorans Ter331] gb|AEK61610.1| hypothetical protein CFU_1778 [Collimonas fungivorans Ter331] Length = 460 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/431 (92%), Positives = 416/431 (96%) Query: 1 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALSENGRVIVTG 60 VDSEQILTQLRAEGY+TAKSY GADLVIVNTCGFIDAAVQESLDAIGEALSENG+VIVTG Sbjct: 30 VDSEQILTQLRAEGYETAKSYQGADLVIVNTCGFIDAAVQESLDAIGEALSENGKVIVTG 89 Query: 61 CLGAKKDGDGDDLIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFLDLVPAQGVKLT 120 CLGAKKD DGDD+IQKIHPKVLEVTGPHAVGEVM AVHKHLPKPHAPF DL+P QGVKLT Sbjct: 90 CLGAKKDADGDDIIQKIHPKVLEVTGPHAVGEVMFAVHKHLPKPHAPFFDLLPPQGVKLT 149 Query: 121 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADIMLEAENLFNAGVKELLVISQDTS 180 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIAD+MLEAENLF AGVKELLVISQDTS Sbjct: 150 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVMLEAENLFKAGVKELLVISQDTS 209 Query: 181 AYGVDVKFRTGFWNGKPVKTHMTQLVEALGELASRYGAWVRLHYVYPYPHVDQIIPFMAQ 240 AYGVDVKFR GFWNGKPVKTHMTQLV ALGELA++YGAWVRLHYVYPYPHVD IIP MA+ Sbjct: 210 AYGVDVKFRMGFWNGKPVKTHMTQLVTALGELAAQYGAWVRLHYVYPYPHVDHIIPLMAE 269 Query: 241 GHVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRKMCPDLTIRSTFIAGFPGETE 300 G VLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWR MCPDLTIRSTFIAGFPGETE Sbjct: 270 GKVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETE 329 Query: 301 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANLLDNPVPEEVREERRGRVMQLQEEISKK 360 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN LDNPVPEE+REERRGRVMQLQEEISKK Sbjct: 330 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANALDNPVPEELREERRGRVMQLQEEISKK 389 Query: 361 RLQAKVGKTLRVLIDEIDRSGGIGRSSADAPEIDGVVYVKPPFEPHKKLVVGEFVDVVVT 420 RLQAKVGKT+RVLID +DR+GG+GRSSADAPEIDGVVYVKPP+EPHKKLVVGEFVDV +T Sbjct: 390 RLQAKVGKTMRVLIDSVDRNGGVGRSSADAPEIDGVVYVKPPYEPHKKLVVGEFVDVTIT 449 Query: 421 AADAHDLWAAA 431 A+DAHDLWAAA Sbjct: 450 ASDAHDLWAAA 460 >ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64480.1| 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae SmR1] Length = 458 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/432 (92%), Positives = 417/432 (96%) Query: 1 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALSENGRVIVTG 60 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEAL+ENG+VIVTG Sbjct: 27 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALNENGKVIVTG 86 Query: 61 CLGAKKDGDGDDLIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFLDLVPAQGVKLT 120 CLGAKKD +GDD+IQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPF+DLVP QGVKLT Sbjct: 87 CLGAKKDAEGDDIIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFIDLVPPQGVKLT 146 Query: 121 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADIMLEAENLFNAGVKELLVISQDTS 180 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIAD+MLEAENLF AGVKELLVISQDTS Sbjct: 147 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVMLEAENLFKAGVKELLVISQDTS 206 Query: 181 AYGVDVKFRTGFWNGKPVKTHMTQLVEALGELASRYGAWVRLHYVYPYPHVDQIIPFMAQ 240 AYGVDVKFRTGFWNGKPVKTHMTQLV ALGELA +YGAWVRLHYVYPYPHVDQIIP MA+ Sbjct: 207 AYGVDVKFRTGFWNGKPVKTHMTQLVGALGELAQQYGAWVRLHYVYPYPHVDQIIPMMAE 266 Query: 241 GHVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRKMCPDLTIRSTFIAGFPGETE 300 G +LPYLDVPLQHAHPDVLKRMKRPA+GEKNIERIQAWR MCPDLTIRSTFIAGFPGETE Sbjct: 267 GKILPYLDVPLQHAHPDVLKRMKRPANGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETE 326 Query: 301 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANLLDNPVPEEVREERRGRVMQLQEEISKK 360 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN + NPVPEEVREERRGRVMQLQEEISKK Sbjct: 327 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANEIANPVPEEVREERRGRVMQLQEEISKK 386 Query: 361 RLQAKVGKTLRVLIDEIDRSGGIGRSSADAPEIDGVVYVKPPFEPHKKLVVGEFVDVVVT 420 RLQAKVGKTLRVLIDE+DR+GG GR+ +DAPEIDGVVYVKPPFEPH+KL VG+FVDV +T Sbjct: 387 RLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEIDGVVYVKPPFEPHRKLEVGQFVDVRIT 446 Query: 421 AADAHDLWAAAQ 432 AADAHDLW AA+ Sbjct: 447 AADAHDLWGAAE 458 >ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] sp|A6SXU1.1|RIMO_JANMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gb|ABR89600.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] Length = 453 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/431 (89%), Positives = 409/431 (94%) Query: 1 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALSENGRVIVTG 60 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEAL ENG+VIVTG Sbjct: 23 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALHENGKVIVTG 82 Query: 61 CLGAKKDGDGDDLIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFLDLVPAQGVKLT 120 CLGAKKD DGDD+IQK+HPKVL VTGPHA+GEVM AVHKH+PKPHAPF+DLVPAQG+KLT Sbjct: 83 CLGAKKDADGDDIIQKVHPKVLAVTGPHALGEVMDAVHKHMPKPHAPFIDLVPAQGIKLT 142 Query: 121 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADIMLEAENLFNAGVKELLVISQDTS 180 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIAD+M+EAENLF AGVKELLVISQDTS Sbjct: 143 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTS 202 Query: 181 AYGVDVKFRTGFWNGKPVKTHMTQLVEALGELASRYGAWVRLHYVYPYPHVDQIIPFMAQ 240 AYGVDVKFR GFWNGKPVKTHMTQLVEALGELA +YGAWVRLHYVYPYPHVD IIP MA+ Sbjct: 203 AYGVDVKFRMGFWNGKPVKTHMTQLVEALGELAKQYGAWVRLHYVYPYPHVDAIIPMMAE 262 Query: 241 GHVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRKMCPDLTIRSTFIAGFPGETE 300 G +LPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWR MCPDLTIRSTFIAGFPGET+ Sbjct: 263 GKILPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETD 322 Query: 301 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANLLDNPVPEEVREERRGRVMQLQEEISKK 360 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN L N VPEEVREERRGRVM LQEEISKK Sbjct: 323 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKK 382 Query: 361 RLQAKVGKTLRVLIDEIDRSGGIGRSSADAPEIDGVVYVKPPFEPHKKLVVGEFVDVVVT 420 RLQAKVGKT+RVL+DE++R+GG+ RS ADAPEIDGVVYVKPP+EPH KL VGEF+DV +T Sbjct: 383 RLQAKVGKTMRVLLDEVNRNGGVARSGADAPEIDGVVYVKPPYEPHLKLKVGEFIDVKIT 442 Query: 421 AADAHDLWAAA 431 ADAHDLWA A Sbjct: 443 GADAHDLWAEA 453 >ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase [Herminiimonas arsenicoxydans] sp|A4G6D4.1|RIMO_HERAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO emb|CAL62071.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 454 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/432 (88%), Positives = 403/432 (93%), Gaps = 1/432 (0%) Query: 1 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALSENGRVIVTG 60 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEAL ENGRVIVTG Sbjct: 23 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALHENGRVIVTG 82 Query: 61 CLGAKKDGDGDDLIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFLDLVPAQGVKLT 120 CLGAKKD +GDD+IQK+HPKVL VTGPHA+GEVM AVH H+PKPHAPFLDL+P QG+KLT Sbjct: 83 CLGAKKDANGDDIIQKVHPKVLAVTGPHALGEVMDAVHLHMPKPHAPFLDLLPPQGIKLT 142 Query: 121 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADIMLEAENLFNAGVKELLVISQDTS 180 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIAD+M+EAENLF AGVKELLVISQDTS Sbjct: 143 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVMMEAENLFKAGVKELLVISQDTS 202 Query: 181 AYGVDVKFRTGFWNGKPVKTHMTQLVEALGELASRYGAWVRLHYVYPYPHVDQIIPFMAQ 240 AYGVD+KFR GFWNGKPVKTHMTQLVEALGELA+ YGAWVRLHYVYPYPHVD IIP MA+ Sbjct: 203 AYGVDIKFRMGFWNGKPVKTHMTQLVEALGELAAPYGAWVRLHYVYPYPHVDAIIPMMAE 262 Query: 241 GHVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRKMCPDLTIRSTFIAGFPGETE 300 G +LPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWR MCPDLTIRSTFIAGFPGETE Sbjct: 263 GKILPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRAMCPDLTIRSTFIAGFPGETE 322 Query: 301 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANLLDNPVPEEVREERRGRVMQLQEEISKK 360 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN L N VPEEVREERRGRVM LQEEISKK Sbjct: 323 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANDLPNAVPEEVREERRGRVMLLQEEISKK 382 Query: 361 RLQAKVGKTLRVLIDEIDRSG-GIGRSSADAPEIDGVVYVKPPFEPHKKLVVGEFVDVVV 419 RLQAKVGKT+RVLIDE++R+G RS ADAPEIDGVVYVK P+EPH K VGEFVDV + Sbjct: 383 RLQAKVGKTMRVLIDEVNRTGAATARSGADAPEIDGVVYVKAPYEPHIKYKVGEFVDVKI 442 Query: 420 TAADAHDLWAAA 431 T ADAHDLWA A Sbjct: 443 TGADAHDLWAEA 454 >ref|YP_725947.1| hypothetical protein H16_A1444 [Ralstonia eutropha H16] sp|Q0KBP2.1|RIMO_RALEH RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO emb|CAJ92579.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 443 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/430 (78%), Positives = 386/430 (89%) Query: 1 VDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAIGEALSENGRVIVTG 60 VDSEQI+TQLRAEGY + +YDGADLV+VNTCGFID AVQESLDAIGEAL+ENG+VIVTG Sbjct: 13 VDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALTENGKVIVTG 72 Query: 61 CLGAKKDGDGDDLIQKIHPKVLEVTGPHAVGEVMQAVHKHLPKPHAPFLDLVPAQGVKLT 120 CLGAKKD G D++ +HPKVL VTGPHA+GEVMQAVH HLPKPH PF DLVPA G+KLT Sbjct: 73 CLGAKKDAAGHDIVSSVHPKVLAVTGPHALGEVMQAVHTHLPKPHDPFTDLVPAAGIKLT 132 Query: 121 PKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADIMLEAENLFNAGVKELLVISQDTS 180 PKH+AYLKISEGCNHRCSFCIIPSMRGDLVSRP+A++MLEAENLF AGVKELLVISQDTS Sbjct: 133 PKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVAEVMLEAENLFKAGVKELLVISQDTS 192 Query: 181 AYGVDVKFRTGFWNGKPVKTHMTQLVEALGELASRYGAWVRLHYVYPYPHVDQIIPFMAQ 240 AYGVDVK+RTGFWNG+P+KT MT+LV ALGELA++YGAWVRLHYVYPYPHVD+IIP M+Q Sbjct: 193 AYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGAWVRLHYVYPYPHVDEIIPLMSQ 252 Query: 241 GHVLPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWRKMCPDLTIRSTFIAGFPGETE 300 GHVLPYLDVPLQHAHPDVLKRMKRPA+ EK ++RI+AWR++CP+LTIRSTFIAGFPGETE Sbjct: 253 GHVLPYLDVPLQHAHPDVLKRMKRPANAEKTMDRIRAWREICPELTIRSTFIAGFPGETE 312 Query: 301 AEFEYLLDFLKEAEIDRLGCFAYSPVEGATANLLDNPVPEEVREERRGRVMQLQEEISKK 360 AEF+ LLDF+ EAE+DR+GCFAYSPVEGATAN L +P+EVREERR R M++ EE+S + Sbjct: 313 AEFQTLLDFIAEAELDRVGCFAYSPVEGATANDLPGALPDEVREERRARFMEVAEEVSAR 372 Query: 361 RLQAKVGKTLRVLIDEIDRSGGIGRSSADAPEIDGVVYVKPPFEPHKKLVVGEFVDVVVT 420 RLQ KVG+TLRVL+DE+++ GGIGRSSADAPEIDG+VY+ PP ++ GEFVDV +T Sbjct: 373 RLQRKVGQTLRVLVDEVNQDGGIGRSSADAPEIDGLVYIAPPERHAQRYRAGEFVDVKIT 432 Query: 421 AADAHDLWAA 430 AD HDLW A Sbjct: 433 GADGHDLWGA 442