BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0016.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776397.1| LysR family transcription regulator protein ... 420 e-115 emb|CBJ40941.1| putative transcriptional regulator; LysR family ... 370 e-100 ref|NP_522826.1| transcription regulator protein [Ralstonia sola... 368 e-100 ref|YP_001892669.1| LysR family transcriptional regulator [Ralst... 367 2e-99 ref|ZP_07673649.1| transcriptional regulator, LysR family [Ralst... 366 3e-99 >ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64489.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/293 (69%), Positives = 248/293 (84%) Query: 59 MSTRLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVR 118 MS R +LSDLRLFLH+ E+GSIT GA R+H+ALASASARIR+MEDALG LL R RRGV+ Sbjct: 1 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ 60 Query: 119 LTEAGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQ 178 T+AGRAL HHAR + QQM++LRDEL +YA GLKGHIRLL NT+A++EFLP+ L FLA+ Sbjct: 61 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR 120 Query: 179 NPYIDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALA 238 +P+ DI+LEE+LS+E+VQA++DGVAD+GI+ADS +GPLQT PFRQD LVAVL +RH LA Sbjct: 121 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA 180 Query: 239 RRKTLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVG 298 RRK+L FAEL+ +F+GLS SALQ+HL+GHA RAGKRLQYRVRLRSFDGICRMVE +VG Sbjct: 181 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 Query: 299 IAVIPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 +AV+PETAAL M+I +IPLSD W++RQLLICVR E LPG TR+L++ L Sbjct: 241 VAVLPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQAL 293 >emb|CBJ40941.1| putative transcriptional regulator; LysR family [Ralstonia solanacearum CMR15] Length = 294 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/290 (63%), Positives = 223/290 (76%) Query: 62 RLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTE 121 R DL+DLRLFLH AE+GSITAGA+R+HL LASASARIR ME ALGV LL R RRGV T Sbjct: 2 RFDLTDLRLFLHTAESGSITAGAERAHLTLASASARIRGMEAALGVPLLTRNRRGVETTA 61 Query: 122 AGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPY 181 AGR LLHHAR V QQM+R+R EL EYA GLKG++RLL NTAA++EFLP+ L FLAQ+P Sbjct: 62 AGRTLLHHARVVQQQMERMRGELGEYARGLKGYVRLLSNTAAMTEFLPETLSAFLAQHPE 121 Query: 182 IDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALARRK 241 +DIDLEE +SHEIV+A+ G ADIGIV D+V L+T PFR DRLV V R H LA R+ Sbjct: 122 VDIDLEELVSHEIVEAVAQGRADIGIVNDAVDLSGLETFPFRHDRLVLVTARDHPLAERR 181 Query: 242 TLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAV 301 + F E + +F+GL+ +ALQ +LAGHA RAG RL+YRVRLRSFD +CRMVER VG+ V Sbjct: 182 EIAFVEALREDFVGLTGDNALQAYLAGHAARAGYRLKYRVRLRSFDAVCRMVERNVGVGV 241 Query: 302 IPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 IPE AA+R +++M I + L+DAWA R L ICVR ++LP + RQL+E L Sbjct: 242 IPEHAAIRLQRSMGIRRVRLTDAWATRLLRICVRRFDDLPAYARQLIEHL 291 >ref|NP_522826.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18418.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 294 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/290 (63%), Positives = 223/290 (76%) Query: 62 RLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTE 121 R DL+DLRLFLH AE+GSITAGA+R+HL LASASARIR ME ALGV LL R RRGV T Sbjct: 2 RFDLTDLRLFLHTAESGSITAGAERAHLTLASASARIRGMEAALGVPLLTRNRRGVETTA 61 Query: 122 AGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPY 181 AGR L+HHAR V QQM+R+R EL EYA GLKGH+RLL NTAA++EFLP+ L FLAQ+P Sbjct: 62 AGRTLVHHARVVLQQMERMRGELGEYARGLKGHVRLLSNTAAMTEFLPETLSAFLAQHPE 121 Query: 182 IDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALARRK 241 +DIDLEE +SHEIV+A+ G ADIGIV D+V L+T PFR DRLV V R H LA R+ Sbjct: 122 VDIDLEELVSHEIVEAVAQGRADIGIVNDAVDLSGLETFPFRHDRLVLVTARDHPLAARR 181 Query: 242 TLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAV 301 + F + + +F+GL+ +ALQ +LAGHA RAG RL+YRVRLRSFD +CRMVER VG+ V Sbjct: 182 EIAFVDALQEDFVGLTGDNALQAYLAGHAARAGHRLKYRVRLRSFDAVCRMVERSVGVGV 241 Query: 302 IPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 IPE AA+R +++M I + L+DAWA R L ICVR ++LP + RQL+E L Sbjct: 242 IPEHAAIRLQRSMGIRRVGLTDAWATRLLRICVRRFDDLPAYARQLIEHL 291 >ref|YP_001892669.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984170.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29242.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gb|ACS65498.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 294 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/290 (63%), Positives = 220/290 (75%) Query: 62 RLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTE 121 R DL+DLRLFLH AE GSITAGA+R+HL LASASARIR MEDALG LL R RRGV T Sbjct: 2 RFDLTDLRLFLHTAEAGSITAGAERAHLTLASASARIRGMEDALGAPLLTRNRRGVETTA 61 Query: 122 AGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPY 181 AGR L+HHAR V QQMDR+R EL EYA GLKG++RLL NTAA++EFLP+ L FLA +P Sbjct: 62 AGRTLVHHARVVLQQMDRMRGELGEYARGLKGYVRLLSNTAAMTEFLPETLSAFLAAHPE 121 Query: 182 IDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALARRK 241 +D+DLEE +SHEIV+AI G ADIGIV D+V L+T PFR DRLV V R H LA R+ Sbjct: 122 VDVDLEELVSHEIVEAIAQGRADIGIVNDAVDLSGLETFPFRHDRLVLVTAREHPLAERR 181 Query: 242 TLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAV 301 L F E + +F+GL+ +ALQ +LAGHA RAG RL+YRVRLRSFD +CRMVER VG+ V Sbjct: 182 ELAFVETLQEDFVGLTGDNALQAYLAGHAARAGHRLKYRVRLRSFDAVCRMVERNVGVGV 241 Query: 302 IPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 IPE AA+R +++M I + L+DAWA R L ICVR ++LP RQL+E L Sbjct: 242 IPEHAAIRLQRSMGIRRVRLTDAWATRLLRICVRHFDDLPVFARQLIEHL 291 >ref|ZP_07673649.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP67853.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 294 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 184/290 (63%), Positives = 220/290 (75%) Query: 62 RLDLSDLRLFLHVAETGSITAGADRSHLALASASARIRSMEDALGVALLLRERRGVRLTE 121 R DL+DLRLFLH AE GSITAGA+R+HL LASASARIR MED LGV LL R RRGV T Sbjct: 2 RFDLTDLRLFLHTAEAGSITAGAERAHLTLASASARIRGMEDTLGVPLLTRNRRGVETTA 61 Query: 122 AGRALLHHARTVHQQMDRLRDELSEYAHGLKGHIRLLGNTAAISEFLPDALGTFLAQNPY 181 AGR L+HHAR V QQMDR+R EL EYA GLKG++RLL NTAA++EFLP+ L FLA +P Sbjct: 62 AGRTLVHHARVVLQQMDRMRGELGEYARGLKGYVRLLSNTAAMTEFLPETLSAFLAVHPE 121 Query: 182 IDIDLEERLSHEIVQAIVDGVADIGIVADSVPTGPLQTIPFRQDRLVAVLPRRHALARRK 241 +DIDLEE +SHEIV+AI G ADIGIV D+V L+T PFR DR+V V R H LA R+ Sbjct: 122 VDIDLEELVSHEIVEAIAQGRADIGIVNDAVDLSGLETFPFRHDRIVLVTARDHPLAERR 181 Query: 242 TLQFAELVDRNFIGLSNGSALQEHLAGHALRAGKRLQYRVRLRSFDGICRMVEREVGIAV 301 L F E + +F+GL+ +ALQ +LAGHA RAG RL+YRVRLRSFD +CRMVER VG+ V Sbjct: 182 ELAFVETLQEDFVGLTGDNALQAYLAGHAARAGHRLKYRVRLRSFDAVCRMVERNVGVGV 241 Query: 302 IPETAALRCKQTMEINSIPLSDAWAKRQLLICVRSREELPGHTRQLLEQL 351 IPE AA+R +++M I + L+DAWA R L ICVR ++LP RQL+E L Sbjct: 242 IPEHAAIRLQRSMGIRRVRLTDAWATRLLRICVRHFDDLPVFARQLIEHL 291