BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0012.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776399.1| ribosomal large subunit pseudouridine syntha... 204 4e-51 ref|YP_001353083.1| ribosomal large subunit pseudouridine syntha... 200 9e-50 ref|YP_001100200.1| pseudouridine synthase [Herminiimonas arseni... 199 1e-49 ref|YP_004752427.1| ribosomal large subunit pseudouridine syntha... 191 4e-47 ref|ZP_08273174.1| Ribosomal large subunit pseudouridine synthas... 186 1e-45 >ref|YP_003776399.1| ribosomal large subunit pseudouridine synthase D [Herbaspirillum seropedicae SmR1] gb|ADJ64491.1| ribosomal large subunit pseudouridine synthase D protein [Herbaspirillum seropedicae SmR1] Length = 370 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 103/167 (61%), Positives = 125/167 (74%), Gaps = 1/167 (0%) Query: 1 MSRTTPPKVVKAFATEPVEIPEGDDSLDEVVE-EFTDGAEPITLKLTDDACGVRLDKVLS 59 MSR P ++ ++P+ DD D E G EP+TL+L D+ G RLDKVLS Sbjct: 1 MSRKKPLQITNGDTPVHTDLPQADDFDDAHDGDEIGPGLEPLTLRLDDEVIGQRLDKVLS 60 Query: 60 GLVPQYSRSRIQQWIEGGYVTVDGNPARTKMTVLGDELVIITPQAAPEDNAFQPEPMDLS 119 GL+P++SRSRIQQWIE G+VTV+G PA+ KMT+LGDELV + PQ+ P D + PEPM L Sbjct: 61 GLLPEFSRSRIQQWIEDGHVTVNGAPAKAKMTMLGDELVEVAPQSVPSDQPYGPEPMALD 120 Query: 120 ILHEDKAIMVIDKPAGLVVHPAAGNWSGTLLNGLLHHCPALAGVPRG 166 ILHEDKA++V++KPAGLVVHPAAGNWSGTLLNGLLHHCPALA VPR Sbjct: 121 ILHEDKALIVLNKPAGLVVHPAAGNWSGTLLNGLLHHCPALAKVPRA 167 >ref|YP_001353083.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium sp. Marseille] gb|ABR89748.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium sp. Marseille] Length = 342 Score = 200 bits (508), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 98/144 (68%), Positives = 115/144 (79%), Gaps = 4/144 (2%) Query: 22 EGDDSLDEVVEEFTDGAEPITLKLTDDACGVRLDKVLSGLVPQYSRSRIQQWIEGGYVTV 81 EG D D++ E PI L L D CGVRLDKVLS LVPQYSRSR+QQWI+GG+V+V Sbjct: 23 EGVDDGDDLALEL----PPIELDLNPDVCGVRLDKVLSTLVPQYSRSRLQQWIDGGHVSV 78 Query: 82 DGNPARTKMTVLGDELVIITPQAAPEDNAFQPEPMDLSILHEDKAIMVIDKPAGLVVHPA 141 DG AR KMTV GDE V+I PQ APED AF+PE MDL+I+HED ++VI+KPAGLVVHPA Sbjct: 79 DGEVARAKMTVYGDEKVVIYPQPAPEDEAFKPEAMDLAIVHEDAEMLVINKPAGLVVHPA 138 Query: 142 AGNWSGTLLNGLLHHCPALAGVPR 165 AGNWSGTLLNGLLH+ P+++GVPR Sbjct: 139 AGNWSGTLLNGLLHYLPSISGVPR 162 >ref|YP_001100200.1| pseudouridine synthase [Herminiimonas arsenicoxydans] emb|CAL62076.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) [Herminiimonas arsenicoxydans] Length = 318 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 96/127 (75%), Positives = 107/127 (84%) Query: 40 PITLKLTDDACGVRLDKVLSGLVPQYSRSRIQQWIEGGYVTVDGNPARTKMTVLGDELVI 99 PI L LT CGVRLDKVLS LVPQYSRSR+QQWI+ G+V+VDG AR KMTV GDE V+ Sbjct: 13 PIELDLTPAVCGVRLDKVLSTLVPQYSRSRLQQWIDAGHVSVDGEIARAKMTVYGDEKVV 72 Query: 100 ITPQAAPEDNAFQPEPMDLSILHEDKAIMVIDKPAGLVVHPAAGNWSGTLLNGLLHHCPA 159 I PQ APED AF+PE MDL+I +ED AI+VIDKPAGLVVHPAAGNWSGTLLNGLLH+ PA Sbjct: 73 IYPQPAPEDEAFKPEAMDLNIAYEDAAILVIDKPAGLVVHPAAGNWSGTLLNGLLHYLPA 132 Query: 160 LAGVPRG 166 +AGVPR Sbjct: 133 IAGVPRA 139 >ref|YP_004752427.1| ribosomal large subunit pseudouridine synthase D [Collimonas fungivorans Ter331] gb|AEK61604.1| Ribosomal large subunit pseudouridine synthase D [Collimonas fungivorans Ter331] Length = 350 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 91/130 (70%), Positives = 104/130 (80%) Query: 37 GAEPITLKLTDDACGVRLDKVLSGLVPQYSRSRIQQWIEGGYVTVDGNPARTKMTVLGDE 96 + PI L+LT D CG RLDKV+S LVPQYSRSRIQQWIE G+VTVDG P TKMT GDE Sbjct: 41 ASAPIVLQLTPDVCGTRLDKVVSTLVPQYSRSRIQQWIEAGHVTVDGKPGTTKMTTYGDE 100 Query: 97 LVIITPQAAPEDNAFQPEPMDLSILHEDKAIMVIDKPAGLVVHPAAGNWSGTLLNGLLHH 156 V++ PQ AP++ AF PE M L +++ED AI+VI+KPAGLVVHPAAGNWSGTLLNGLL Sbjct: 101 TVVVLPQPAPDEKAFTPEDMALDVVYEDAAIIVINKPAGLVVHPAAGNWSGTLLNGLLFR 160 Query: 157 CPALAGVPRG 166 PALAGVPR Sbjct: 161 WPALAGVPRA 170 >ref|ZP_08273174.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae bacterium IMCC9480] gb|EGF33364.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/167 (59%), Positives = 122/167 (73%), Gaps = 12/167 (7%) Query: 3 RTTPPKVVKAFATEPVEIPEGDDSLDEVVEEFTDG---AEPITLKLTDDACGVRLDKVLS 59 R TPP + +PE D +DE EE+T G PI L LT CG RLDKV++ Sbjct: 6 RLTPP------LNDAENLPELD--IDEQ-EEYTGGLPDMPPIELDLTPGDCGDRLDKVVA 56 Query: 60 GLVPQYSRSRIQQWIEGGYVTVDGNPARTKMTVLGDELVIITPQAAPEDNAFQPEPMDLS 119 LVPQ+SRSR+QQWI+ G+VTVDG RT+MTV GDE +++ PQAAPED AF PE M L+ Sbjct: 57 RLVPQFSRSRMQQWIDDGFVTVDGKVGRTRMTVYGDEHIVVLPQAAPEDTAFAPEEMALN 116 Query: 120 ILHEDKAIMVIDKPAGLVVHPAAGNWSGTLLNGLLHHCPALAGVPRG 166 I++ED+AI+V++KPAGLVVHP +GNWSGTLLNGLLH+ PAL GVPR Sbjct: 117 IVYEDEAIIVVNKPAGLVVHPGSGNWSGTLLNGLLHYWPALIGVPRA 163