BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0009.p (572 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 628 e-178 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 592 e-167 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 561 e-157 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 553 e-155 ref|YP_003773827.1| methyl-accepting chemotaxis sensory transduc... 551 e-154 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 353/590 (59%), Positives = 434/590 (73%), Gaps = 29/590 (4%) Query: 1 MKWFYDLQISKKLLISFILVLALTSALGAFAIVQLGKVNQASTDIAGNWLPSVRTSLELK 60 MKWFYDL+IS+KL+ +F++V+A+ +ALG F+I QL +VN AST+I+ NWLPS+RT L+ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 ILLIRIRSVQLQHVLSSTEADFAANEKLLDDMVPAMKKKLADYEKLIDTDIEKAVYPQLV 120 + + R+RS +LQH+L+ ++ E+ + + +K A+Y I EKA+YP++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KNFDAFLAWQKKILDLSRQDKNEEAREVIMKDATPIYLAMFANTDKLVAANQEGADLADK 180 K F++ KI+ LSRQ K+EEAR + ++T Y DKL A N +GAD+++K Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 SAEATYDSSRIMIVAMLAACIALGMLMAIWVARIVSNPLRLAVNVAQRVADGDLTADIRP 240 A+A Y +R+ I+ +AACI L ML+A+WV+R+++ PL AV+VAQRVA GDLT I P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 SSKDETGQLMTSLKAMNDSLFKIVSQVRQGTDTIATASNEIAVGNLDLSSRTEQQASSLE 300 + KDETGQL+ +LK+MNDSL IV QVR GT TI TAS EIA GNLDLSSRTE+QASSLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVAIQGGSVVEQVVDTMGSINDSSKKIVD 360 ETAS+MEELTSTVKQNADNARQANQLAVSASEVA QGG+VV QVVDTMGSIN SS+KI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVEKVDVGSKLVAQAGSTMTEVVSSVKRVTDIVGEITAASQEQSAGIEEVNQAITQMDEV 480 SV +VD+GSKLV +AG TM+EVV SV+RVTDIVGEI++ASQEQS GIE+VN AI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAAKLAEIVSVFKLDDAQAKPSPVSVVSASRSRPPVFAKA 540 TQQNAALVEEAAAAAQSLQ+QA L + V FKL+ +P+ SRPPV +A Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPA---------SRPPV--RA 529 Query: 541 AVPARLPA-QKAAAAPP-----------------QIKQATPDDGNSWEQF 572 A AR A + A A P ++ +DG SWEQF Sbjct: 530 ASVARTAAVRHAPATRPAATLAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 320/518 (61%), Positives = 400/518 (77%), Gaps = 1/518 (0%) Query: 1 MKWFYDLQISKKLLISFILVLALTSALGAFAIVQLGKVNQASTDIAGNWLPSVRTSLELK 60 M WFY+L+I+ KLL+SF L+L LT LG +I QLG+VN + +I NWLPSVR L LK Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 61 ILLIRIRSVQLQHVLSSTEADFAANEKLLDDMVPAMKKKLADYEKLIDTDIEKAVYPQLV 120 L +R+V++QHV+S+ AD + + + D+ ++K L++Y L+ + E+AVY QL Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVSEE-ERAVYDQLK 214 Query: 121 KNFDAFLAWQKKILDLSRQDKNEEAREVIMKDATPIYLAMFANTDKLVAANQEGADLADK 180 +L KKI+D+SR + ++A + I D+ + + ++LV N +G+ + K Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 181 SAEATYDSSRIMIVAMLAACIALGMLMAIWVARIVSNPLRLAVNVAQRVADGDLTADIRP 240 EA Y+ +R ++ ++ A + LG +A+W+AR+V+ PL AV+VA+RVA GDLTADI Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIEV 334 Query: 241 SSKDETGQLMTSLKAMNDSLFKIVSQVRQGTDTIATASNEIAVGNLDLSSRTEQQASSLE 300 S DETGQLM +LK MN SL KIV +VR GTDTIATAS +IA GN +LS RTEQQASSLE Sbjct: 335 RSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLE 394 Query: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVAIQGGSVVEQVVDTMGSINDSSKKIVD 360 ETA+SME+LTSTVKQNADNA QANQLAVSASEVA+ GG+VV QVV TMG+IN SSKKIVD Sbjct: 395 ETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVD 454 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LIDD Sbjct: 455 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDD 514 Query: 421 SVEKVDVGSKLVAQAGSTMTEVVSSVKRVTDIVGEITAASQEQSAGIEEVNQAITQMDEV 480 SVEKV +G++LV QAGSTM E+V+SV+RVTDI+GEITAASQEQ+AGIE++NQAI+QMD+V Sbjct: 515 SVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQV 574 Query: 481 TQQNAALVEEAAAAAQSLQDQAAKLAEIVSVFKLDDAQ 518 TQQNAALVEEAAAAA SLQDQA LA +V FKL+ A Sbjct: 575 TQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLERAH 612 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 317/514 (61%), Positives = 393/514 (76%) Query: 1 MKWFYDLQISKKLLISFILVLALTSALGAFAIVQLGKVNQASTDIAGNWLPSVRTSLELK 60 M WF +L+I+KKL++SF V+ LT LG FAI +L VNQASTD+A NWLP+++ + ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 ILLIRIRSVQLQHVLSSTEADFAANEKLLDDMVPAMKKKLADYEKLIDTDIEKAVYPQLV 120 L R+R +LQ V ++T A+ K + + + K+ A YE I EK +Y + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KNFDAFLAWQKKILDLSRQDKNEEAREVIMKDATPIYLAMFANTDKLVAANQEGADLADK 180 K+F +L K++ +S + K EEAR + D+ + +M N D+++ N G+ +D Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 SAEATYDSSRIMIVAMLAACIALGMLMAIWVARIVSNPLRLAVNVAQRVADGDLTADIRP 240 AE Y S+ + I+ +LAA + + + +A+ VAR VS PL AV VA+RVA GDLT DIR Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 SSKDETGQLMTSLKAMNDSLFKIVSQVRQGTDTIATASNEIAVGNLDLSSRTEQQASSLE 300 +S DETG LM SL+AMNDSL +IV +VR GTDTI TAS EIA GNLDLSSRTE+QA SLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVAIQGGSVVEQVVDTMGSINDSSKKIVD 360 ETAS+MEELT+TVKQNADNARQANQLA SAS++A QGG+VV QVV TM I +SS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVEKVDVGSKLVAQAGSTMTEVVSSVKRVTDIVGEITAASQEQSAGIEEVNQAITQMDEV 480 SVEKV GS+LV +AG+TM+EVV+SV+RVTD+V EI+AAS EQS GIEE+N+AITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAAKLAEIVSVFKL 514 TQQNAALVEEAAAAAQSLQDQAA+L+++VSVFKL Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 311/577 (53%), Positives = 412/577 (71%), Gaps = 11/577 (1%) Query: 1 MKWFYDLQISKKLLISFILVLALTSALGAFAIVQLGKVNQASTDIAGNWLPSVRTSLELK 60 M WFY+L+I+ KL +F++VL LG F+ ++L VN++STDIA NWLPS+ ++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 ILLIRIRSVQLQHVLSSTEADFAANEKLLDDMVPAMKKKLADYEKLIDTDIEKAVYPQLV 120 + L R RS +Q +L++ + + A+ + D + + K++A Y KL+ EK +YP++ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KNFDAFLAWQKKILDLSRQDKNEEAREVIMKDATPIYLAMFANTDKLVAANQEGADLADK 180 +N + +++ L QD+ + A ++ +TP+Y + +L N +GA L+D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 SAEATYDSSRIMIVAMLAACIALGMLMAIWVARIVSNPLRLAVNVAQRVADGDLTADIRP 240 A+ Y + + I+A++ C+ L M ++ W+AR+V+ PL AV++A++VA GDLTADI Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 SSKDETGQLMTSLKAMNDSLFKIVSQVRQGTDTIATASNEIAVGNLDLSSRTEQQASSLE 300 + +DETGQL+ +L+ MN +L IV +VRQGTDTI TAS EIA GN+DLSSRTEQQA +LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVAIQGGSVVEQVVDTMGSINDSSKKIVD 360 ETAS+MEELTSTV+QN+DNARQANQLAV+ASEVA GG+VV +VV TM +INDSS+KIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA EIKALIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVEKVDVGSKLVAQAGSTMTEVVSSVKRVTDIVGEITAASQEQSAGIEEVNQAITQMDEV 480 SV KVD GSKLV +AG TM EVV+SVKRV+DIV EITAA EQ+ GIE++N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAAKLAEIVSVFKLDDAQAKPSPVSVVSASRSRPPVFAKA 540 TQQNAALVE+AAAAA++LQ+QA +L+E VSVF+LD A+ PV V A+ + P + Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD---AQHVPVVVSRAAATAQP--ERD 535 Query: 541 AVPARLPA-----QKAAAAPPQIKQATPDDGNSWEQF 572 PAR PA K A P + + WEQF Sbjct: 536 ITPAR-PALAQSRSKVMARPAHSNTSASAEQGDWEQF 571 >ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] gb|ADJ61919.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 303/518 (58%), Positives = 391/518 (75%), Gaps = 1/518 (0%) Query: 1 MKWFYDLQISKKLLISFILVLALTSALGAFAIVQLGKVNQASTDIAGNWLPSVRTSLELK 60 M WFY+ +I+ KLL++F VL LT LG F+IVQL KVNQA+T++A NWLPS+R+ ++K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 ILLIRIRSVQLQHVL-SSTEADFAANEKLLDDMVPAMKKKLADYEKLIDTDIEKAVYPQL 119 + L R+R+ Q Q L E +A L++ + A+ + Y I EKA++P + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 VKNFDAFLAWQKKILDLSRQDKNEEAREVIMKDATPIYLAMFANTDKLVAANQEGADLAD 179 D F+A L R K +EA+ +++ A YL++ + DKL N +G+ + Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 KSAEATYDSSRIMIVAMLAACIALGMLMAIWVARIVSNPLRLAVNVAQRVADGDLTADIR 239 +SAE TYD +++ +VA+L + G+ +A+++AR+++ PLR A A +A GDLTADI Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 PSSKDETGQLMTSLKAMNDSLFKIVSQVRQGTDTIATASNEIAVGNLDLSSRTEQQASSL 299 S DETGQL +L AMN SL +IVSQVR GTD IATAS +I+ GNLDLSSRTE+QASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASSMEELTSTVKQNADNARQANQLAVSASEVAIQGGSVVEQVVDTMGSINDSSKKIV 359 EETAS+MEELTSTV+QNA+NARQANQLA+SAS +A +GG VV QV++TMGSI+ SSKKIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALID 419 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVEKVDVGSKLVAQAGSTMTEVVSSVKRVTDIVGEITAASQEQSAGIEEVNQAITQMDE 479 +SV++V +GS LV +AG T++EVVSSV+RVTD++ EI+AAS EQ+ GIE+VNQAITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEEAAAAAQSLQDQAAKLAEIVSVFKLDDA 517 VTQQNAALVEEAA+A+QSL QA +L+E+V VF+L A Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGA 518